Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Forward (+)

70966821 .. 70967601

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG443300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCCGTCGCGTTTTTTCTCTACTGCCACCGAGTCAAGCACCAATCGGAGACTCAGAAACTTGTGATTGACCGAGGAAGCAGCTCGCAGTGGTTCGCCAATGATTCCAGAGCGGCCCCTTCGAGCTTCCTCTATATTGGCATCGTCGAGCAGAGCCACAACTCCATGAGTAGCGACGCCATGGGCGGAGCAACGTCGGAAGTGGATAGGTCGCCGTACCAGAAACTCAACAGATTGGATCGCTGGAGTTGGGATCCTCGAGTTGGATCTCGCAGTGGGACTGGGGAGGCTGAGATGGAAGGTGACGGGGCTAGGGATGAGGAGCAGGCATTATGGGATTTATGTCAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

117

Amino Acids

13.14

Weight (kDa)

5.07

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	113, 186
AclWI	GGATC	4 cut(s)	246, 248, 261, 274
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	263
AluBI	AGCT	2 cut(s)	84, 126
AluI	AGCT	2 cut(s)	84, 126
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	4 cut(s)	246, 248, 261, 274
Ama87I	CYCGRG	1 cut(s)	258
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	314
AvaI	CYCGRG	1 cut(s)	258
BamHI	GGATCC	1 cut(s)	253
BbvI	GCAGC	1 cut(s)	93
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	82, 114
BlsI	GCNGC	2 cut(s)	83, 115
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	2 cut(s)	117, 255
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	73, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	73, 180
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	2 cut(s)	68, 282
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	238, 253, 266
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	2 cut(s)	113, 186
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	67, 283
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	117, 255
BspPI	GGATC	4 cut(s)	246, 248, 261, 274
BsrBI	CCGCTC	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	286
BssECI	CCNNGG	2 cut(s)	73, 180
BssMI	GATC	3 cut(s)	238, 253, 266
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	177
BstC8I	GCNNGC	2 cut(s)	86, 327
BstDEI	CTNAG	2 cut(s)	54, 291
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	3 cut(s)	241, 256, 269
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	3 cut(s)	238, 253, 266
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	93
BstX2I	RGATCY	2 cut(s)	253, 266
BstYI	RGATCY	2 cut(s)	253, 266
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	322
BtsI	GCAGTG	2 cut(s)	95, 280
BtsIMutI	CAGTG	2 cut(s)	95, 280
Cac8I	GCNNGC	2 cut(s)	86, 327
Cfr13I	GGNCC	1 cut(s)	115
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	166, 181
CviJI	RGCY	6 cut(s)	84, 116, 126, 156, 290, 311
CviKI_1	RGCY	6 cut(s)	84, 116, 126, 156, 290, 311
CviQI	GTAC	1 cut(s)	217
DdeI	CTNAG	2 cut(s)	54, 291
DpnI	GATC	3 cut(s)	240, 255, 268
DpnII	GATC	3 cut(s)	238, 253, 266
EciI	GGCGGA	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	2 cut(s)	169, 184
FaiI	YATR	5 cut(s)	135, 167, 182, 334, 343
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	2 cut(s)	165, 180
Fnu4HI	GCNGC	2 cut(s)	82, 114
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	2 cut(s)	82, 114
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	2 cut(s)	82, 114
GsuI	CTGGAG	1 cut(s)	265
HaeIII	GGCC	1 cut(s)	116
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	169, 184
HinfI	GANTC	3 cut(s)	33, 52, 104
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	3 cut(s)	49, 57, 199
Hpy188III	TCNNGA	1 cut(s)	108
Hpy99I	CGWCG	4 cut(s)	11, 149, 179, 199
HpyAV	CCTTC	2 cut(s)	129, 293
HpyCH4IV	ACGT	1 cut(s)	194
HpyF3I	CTNAG	2 cut(s)	54, 291
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	169, 184
Kzo9I	GATC	3 cut(s)	238, 253, 266
LmnI	GCTCC	2 cut(s)	188, 322
LpnPI	CCDG	5 cut(s)	121, 229, 233, 267, 311
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	302
MalI	GATC	3 cut(s)	240, 255, 268
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	3 cut(s)	238, 253, 266
MflI	RGATCY	2 cut(s)	253, 266
MlyI	GAGTC	2 cut(s)	42, 46
MmeI	TCCRAC	2 cut(s)	177, 244
MnlI	CCTC	5 cut(s)	68, 140, 267, 280, 313
MvnI	CGCG	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	3 cut(s)	238, 253, 266
NlaIII	CATG	2 cut(s)	169, 184
NlaIV	GGNNCC	2 cut(s)	117, 255
NmuCI	GTSAC	1 cut(s)	302
PaeR7I	CTCGAG	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	2 cut(s)	83, 115
PleI	GAGTC	2 cut(s)	41, 46
PpsI	GAGTC	2 cut(s)	41, 46
PspN4I	GGNNCC	2 cut(s)	117, 255
PspPI	GGNCC	1 cut(s)	115
PspXI	VCTCGAGB	1 cut(s)	258
PsuI	RGATCY	2 cut(s)	253, 266
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
SatI	GCNGC	2 cut(s)	82, 114
Sau3AI	GATC	3 cut(s)	238, 253, 266
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	42, 46
SetI	ASST	5 cut(s)	86, 128, 197, 212, 304
SfaNI	GCATC	1 cut(s)	150
Sfr274I	CTCGAG	1 cut(s)	258
SlaI	CTCGAG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
SsiI	CCGC	2 cut(s)	113, 186
SspMI	CTAG	1 cut(s)	312
StyI	CCWWGG	1 cut(s)	180
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	3 cut(s)	122, 147, 259
TaqII	GACCGA	1 cut(s)	87
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	2 cut(s)	95, 280
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	302
TspRI	CASTG	2 cut(s)	95, 280
XhoI	CTCGAG	1 cut(s)	258
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.