Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Reverse (-)

12404782 .. 12406512

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG075200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGTTCGATTCTGCATCTGCAACCGGAGAGCGTCTCTCTCGCCATTGTCGAACCGGCTCACAAGCACATTCGAAAGTCCAGAGAGCTTCATCTACGCCTGAAGAGTTGAGATCTTATCAAGGACGATCGATTCAGCTCTTGCAAGATCCGAAGCACCATACAAATTCAAAGGGACCTGCTCAAGCTCAGAACTTAAGAGATTCTCTAGCTGAAGCAAAGTCGAATATTGTGGTCAAGATTGGGCTCAGGAAGGGATCCCGTTCATTTAATGAAGCTCGCGCAGCTGGTTTCACCGAGGAGAATGGGACTTTAGGTGACATATGGGAAACAATCTCAGAGAGTGATCTTGTGTTGCTACTAATTTCTGATCCCGCACAGGCATATTACTTGGTGCTATTCATGGAATTGTGGAGTCCCTGTTTAGAAGATACACCGACAGCGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0010035 GO:0010038 GO:0030312 GO:0031967 GO:0031975 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00290 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

IlvC IlvN

Protein Analysis

148

Amino Acids

16.32

Weight (kDa)

5.82

Isoelectric Point (pI)

49.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KARI_N	PF07991	56 - 127	8.9e-07	Acetohydroxy acid isomeroreductase, NADPH-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccII	CGCG	1 cut(s)	279
AciI	CCGC	2 cut(s)	372, 440
AclWI	GGATC	4 cut(s)	140, 249, 262, 362
AcsI	RAATTY	1 cut(s)	163
AcuI	CTGAAG	2 cut(s)	120, 231
AflII	CTTAAG	1 cut(s)	193
AgsI	TTSAA	1 cut(s)	168
AluBI	AGCT	6 cut(s)	86, 136, 185, 209, 275, 284
AluI	AGCT	6 cut(s)	86, 136, 185, 209, 275, 284
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	4 cut(s)	140, 249, 262, 362
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	163
AspLEI	GCGC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	2 cut(s)	283, 326
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	293
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	1 cut(s)	206
BfrI	CTTAAG	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	184
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	174, 256
BmsI	GCATC	1 cut(s)	23
BplI	GAGNNNNNCTC	4 cut(s)	18, 50, 20, 52
Bpu10I	CCTNAGC	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	1 cut(s)	23
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bse118I	RCCGGY	1 cut(s)	53
BseCI	ATCGAT	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	294
BseMII	CTCAG	3 cut(s)	200, 259, 348
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	1 cut(s)	293
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	128
BshVI	ATCGAT	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	128
BsiSI	CCGG	2 cut(s)	24, 54
BslFI	GGGAC	3 cut(s)	186, 319, 399
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	3 cut(s)	186, 319, 399
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	6 cut(s)	110, 125, 145, 254, 343, 367
BspACI	CCGC	2 cut(s)	372, 440
BspCNI	CTCAG	3 cut(s)	199, 258, 347
BspDI	ATCGAT	1 cut(s)	128
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	2 cut(s)	174, 256
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	4 cut(s)	140, 249, 262, 362
BspT104I	TTCGAA	1 cut(s)	71
BspTI	CTTAAG	1 cut(s)	193
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	6 cut(s)	110, 125, 145, 254, 343, 367
Bst6I	CTCTTC	1 cut(s)	96
BstAFI	CTTAAG	1 cut(s)	193
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	277
BstDEI	CTNAG	3 cut(s)	186, 245, 334
BstFNI	CGCG	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	281
BstKTI	GATC	6 cut(s)	113, 128, 148, 257, 346, 370
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	6 cut(s)	110, 125, 145, 254, 343, 367
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	293
BstX2I	RGATCY	3 cut(s)	110, 145, 254
BstYI	RGATCY	3 cut(s)	110, 145, 254
Bsu15I	ATCGAT	1 cut(s)	128
BsuTUI	ATCGAT	1 cut(s)	128
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	277
CfoI	GCGC	1 cut(s)	281
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	128
CseI	GACGC	1 cut(s)	20
CviAII	CATG	1 cut(s)	400
CviJI	RGCY	8 cut(s)	57, 86, 136, 185, 209, 244, 275, 284
CviKI_1	RGCY	8 cut(s)	57, 86, 136, 185, 209, 244, 275, 284
DdeI	CTNAG	3 cut(s)	186, 245, 334
DpnI	GATC	6 cut(s)	112, 127, 147, 256, 345, 369
DpnII	GATC	6 cut(s)	110, 125, 145, 254, 343, 367
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	2 cut(s)	120, 231
EcoO109I	RGGNCCY	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	1 cut(s)	403
FaiI	YATR	5 cut(s)	159, 320, 322, 382, 401
FaqI	GGGAC	3 cut(s)	186, 319, 399
FatI	CATG	1 cut(s)	399
FauI	CCCGC	1 cut(s)	379
FauNDI	CATATG	1 cut(s)	320
Fnu4HI	GCNGC	1 cut(s)	282
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	282
FspBI	CTAG	1 cut(s)	206
GlaI	GCGC	1 cut(s)	280
GluI	GCNGC	1 cut(s)	282
HapII	CCGG	2 cut(s)	24, 54
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	1 cut(s)	281
Hin1II	CATG	1 cut(s)	403
Hin6I	GCGC	1 cut(s)	279
HinP1I	GCGC	1 cut(s)	279
HinfI	GANTC	4 cut(s)	8, 130, 200, 412
HpaII	CCGG	2 cut(s)	24, 54
HphI	GGTGA	2 cut(s)	283, 326
Hpy188I	TCNGA	4 cut(s)	150, 189, 337, 367
Hpy188III	TCNNGA	3 cut(s)	79, 235, 247
HpyAV	CCTTC	1 cut(s)	244
HpyCH4V	TGCA	3 cut(s)	14, 20, 142
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	3 cut(s)	186, 245, 334
Hsp92II	CATG	1 cut(s)	403
HspAI	GCGC	1 cut(s)	279
Kzo9I	GATC	6 cut(s)	110, 125, 145, 254, 343, 367
LpnPI	CCDG	9 cut(s)	37, 67, 92, 111, 189, 232, 270, 362, 430
Lsp1109I	GCAGC	1 cut(s)	293
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	6 cut(s)	112, 127, 147, 256, 345, 369
MboI	GATC	6 cut(s)	110, 125, 145, 254, 343, 367
MboII	GAAGA	2 cut(s)	113, 437
MflI	RGATCY	3 cut(s)	110, 145, 254
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	3 cut(s)	163, 360, 404
MlyI	GAGTC	1 cut(s)	421
MnlI	CCTC	1 cut(s)	289
MseI	TTAA	2 cut(s)	194, 267
MspA1I	CMGCKG	2 cut(s)	284, 440
MspCI	CTTAAG	1 cut(s)	193
MspI	CCGG	2 cut(s)	24, 54
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	281
NdeI	CATATG	1 cut(s)	320
NdeII	GATC	6 cut(s)	110, 125, 145, 254, 343, 367
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	2 cut(s)	174, 256
NmuCI	GTSAC	1 cut(s)	314
NspV	TTCGAA	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PfeI	GAWTC	3 cut(s)	8, 130, 200
PkrI	GCNGC	1 cut(s)	283
Ple19I	CGATCG	1 cut(s)	128
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PpuMI	RGGWCCY	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	173
PspN4I	GGNNCC	2 cut(s)	174, 256
PspPI	GGNCC	1 cut(s)	173
PspPPI	RGGWCCY	1 cut(s)	173
PsuI	RGATCY	3 cut(s)	110, 145, 254
PvuI	CGATCG	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	284
SaqAI	TTAA	2 cut(s)	194, 267
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	6 cut(s)	110, 125, 145, 254, 343, 367
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	8 cut(s)	88, 138, 178, 187, 211, 277, 286, 316
SfaNI	GCATC	1 cut(s)	23
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	180, 193
SmoI	CTYRAG	2 cut(s)	180, 193
Sse9I	AATT	3 cut(s)	163, 360, 404
SsiI	CCGC	2 cut(s)	372, 440
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	1 cut(s)	206
TaqI	TCGA	5 cut(s)	6, 49, 71, 128, 221
TasI	AATT	3 cut(s)	163, 360, 404
TfiI	GAWTC	3 cut(s)	8, 130, 200
Tru1I	TTAA	2 cut(s)	194, 267
Tru9I	TTAA	2 cut(s)	194, 267
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	4 cut(s)	78, 252, 285, 388
Vha464I	CTTAAG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	163
XspI	CTAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.