Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Forward (+)

83485348 .. 83485515

Gene Structure 168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG603100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGTCCATCGGAATCGTCACGCTCGCTTTTTTTCTCTATTGCCACCGAGTCAAGCACCAATCGGAGACTCAGACACTCGTTAATGGTGGAGGGAGCAGCTCGCAGTGGTTCGCCGACAATTCCAGAGCGGCGCCTTCAAGCTTCCTCTATATGGACACCGTCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

55

Amino Acids

6.09

Weight (kDa)

6.01

Isoelectric Point (pI)

58.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	130
AccBSI	CCGCTC	1 cut(s)	128
AciI	CCGC	1 cut(s)	128
AcyI	GRCGYC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	138
AluBI	AGCT	2 cut(s)	99, 141
AluI	AGCT	2 cut(s)	99, 141
Alw26I	GTCTC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	96
AspLEI	GCGC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	130
BbvI	GCAGC	1 cut(s)	108
BccI	CCATC	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	134
BisI	GCNGC	2 cut(s)	97, 129
BlsI	GCNGC	2 cut(s)	98, 130
BmiI	GGNNCC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	151
BseMII	CTCAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	108
BshNI	GGYRCC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	151
BsmAI	GTCTC	1 cut(s)	59
BspACI	CCGC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	130
BsrBI	CCGCTC	1 cut(s)	128
BssNI	GRCGYC	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	160
BstACI	GRCGYC	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	24, 101
BstDEI	CTNAG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	133
BstMAI	GTCTC	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	108
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	2 cut(s)	24, 101
CfoI	GCGC	1 cut(s)	133
CviJI	RGCY	2 cut(s)	99, 141
CviKI_1	RGCY	2 cut(s)	99, 141
DdeI	CTNAG	1 cut(s)	69
DinI	GGCGCC	1 cut(s)	132
EgeI	GGCGCC	1 cut(s)	132
EheI	GGCGCC	1 cut(s)	132
FaiI	YATR	2 cut(s)	150, 152
Fnu4HI	GCNGC	2 cut(s)	97, 129
Fsp4HI	GCNGC	2 cut(s)	97, 129
GlaI	GCGC	1 cut(s)	132
GluI	GCNGC	2 cut(s)	97, 129
HaeII	RGCGCY	1 cut(s)	134
HhaI	GCGC	1 cut(s)	133
Hin1I	GRCGYC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	131
HinP1I	GCGC	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	3 cut(s)	12, 48, 67
Hpy188I	TCNGA	3 cut(s)	11, 64, 72
Hpy188III	TCNNGA	1 cut(s)	123
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	69
Hsp92I	GRCGYC	1 cut(s)	131
HspAI	GCGC	1 cut(s)	131
KasI	GGCGCC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	1 cut(s)	136
Lsp1109I	GCAGC	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	16
MbiI	CCGCTC	1 cut(s)	128
MluCI	AATT	1 cut(s)	118
Mly113I	GGCGCC	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	57, 61
MnlI	CCTC	2 cut(s)	83, 155
MseI	TTAA	1 cut(s)	81
NarI	GGCGCC	1 cut(s)	131
NlaIV	GGNNCC	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	12
PflFI	GACNNNGTC	1 cut(s)	158
PkrI	GCNGC	2 cut(s)	98, 130
PleI	GAGTC	2 cut(s)	56, 61
PluTI	GGCGCC	1 cut(s)	134
PpsI	GAGTC	2 cut(s)	56, 61
PspN4I	GGNNCC	1 cut(s)	132
PsyI	GACNNNGTC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	97, 129
SchI	GAGTC	2 cut(s)	57, 61
SetI	ASST	2 cut(s)	101, 143
SfoI	GGCGCC	1 cut(s)	132
SgeI	CNNG	8 cut(s)	31, 35, 59, 64, 89, 112, 135, 150
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	1 cut(s)	128
SspDI	GGCGCC	1 cut(s)	130
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	162
TasI	AATT	1 cut(s)	118
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	16
TspRI	CASTG	1 cut(s)	110
Tth111I	GACNNNGTC	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.