RchiOBHm_Chr2g0113681

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
25836219 .. 25839888
3670 bp
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UTR
Exon/CDS
Intron
PRQ48702

Sequence Viewer

Length: 450 bp
ATGTTTGTTAGAGATGCTAAGGCTCTTTGTCCACACCTTGTCATTCTTCCTTATGATTTTGAAGCATATGAGGAGGTAACTAATCGGTTCTATGACATTCTGCATAAGCACTGCAGAAAAGTACAAGCAGTAAGCTGTGACGAAGCATTTTTAGATGTCACATACTTGGAAGGGGTAGATATGGATATGTTAGCCTCAATTATAATACAAGAGATCTTTGAGACTACTGGATGCATTGCAAGTGCTGGCATAGCTAGAAATATGCTCATGGCTCGCCTTACAACAAGAACTGCTAAACCAGACGGTCAATGCAACATTCCTCCCAAAAGGTGCAATATGCAAGAAGGGATGGAGGGAAATCCATTTGCTAAAACCATGAAGACTGTTTCAAGAGGCATGGCTGTTCTTACAGTTCCGTTTACCATGGAATTTCCAAAGAGTGTAGGCTGA

Protein Analysis

149

Amino Acids

16.71

Weight (kDa)

5.91

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMS PF00817 1 - 95 1.5e-22 impB/mucB/samB family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 203
AcsI RAATTY 1 cut(s) 428
AfaI GTAC 1 cut(s) 123
AgsI TTSAA 2 cut(s) 62, 390
AluBI AGCT 2 cut(s) 135, 254
AluI AGCT 2 cut(s) 135, 254
Alw26I GTCTC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 386
BccI CCATC 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 112
BglII AGATCT 1 cut(s) 213
BmsI GCATC 2 cut(s) 4, 221
BpiI GAAGAC 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 423
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 423
BseGI GGATG 2 cut(s) 236, 354
BseMI GCAATG 1 cut(s) 234
BseNI ACTGG 1 cut(s) 232
BseRI GAGGAG 1 cut(s) 86
BsmAI GTCTC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 213
Bsp19I CCATGG 1 cut(s) 423
BspMAI CTGCAG 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 3 cut(s) 305, 385, 412
BstC8I GCNNGC 2 cut(s) 247, 274
BstDEI CTNAG 1 cut(s) 18
BstDSI CCRYGG 1 cut(s) 423
BstF5I GGATG 2 cut(s) 236, 354
BstKTI GATC 1 cut(s) 216
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 213
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 112
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 236, 354
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 247, 274
Csp6I GTAC 1 cut(s) 122
CviAII CATG 4 cut(s) 268, 376, 397, 424
CviJI RGCY 7 cut(s) 23, 135, 194, 254, 272, 401, 447
CviKI_1 RGCY 7 cut(s) 23, 135, 194, 254, 272, 401, 447
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 1 cut(s) 18
DpnI GATC 1 cut(s) 215
DpnII GATC 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 423
EcoT22I ATGCAT 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 4 cut(s) 271, 379, 400, 427
FatI CATG 4 cut(s) 267, 375, 396, 423
FauNDI CATATG 1 cut(s) 67
FokI GGATG 2 cut(s) 243, 361
FspBI CTAG 1 cut(s) 255
Hin1II CATG 4 cut(s) 271, 379, 400, 427
Hpy166II GTNNAC 2 cut(s) 32, 420
Hpy188III TCNNGA 1 cut(s) 390
Hpy8I GTNNAC 2 cut(s) 32, 420
HpyAV CCTTC 2 cut(s) 164, 338
HpyCH4III ACNGT 3 cut(s) 305, 385, 412
HpyCH4V TGCA 7 cut(s) 103, 114, 234, 239, 312, 333, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 4 cut(s) 271, 379, 400, 427
Kzo9I GATC 1 cut(s) 213
LpnPI CCDG 3 cut(s) 213, 231, 312
LweI GCATC 2 cut(s) 4, 221
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 76, 137, 157
MalI GATC 1 cut(s) 215
MboI GATC 1 cut(s) 213
MboII GAAGA 2 cut(s) 38, 391
MflI RGATCY 1 cut(s) 213
MluCI AATT 2 cut(s) 198, 428
MnlI CCTC 6 cut(s) 64, 67, 205, 330, 346, 386
Mph1103I ATGCAT 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 251
NcoI CCATGG 1 cut(s) 423
NdeI CATATG 1 cut(s) 67
NdeII GATC 1 cut(s) 213
NlaIII CATG 4 cut(s) 271, 379, 400, 427
NmuCI GTSAC 2 cut(s) 137, 157
NsiI ATGCAT 1 cut(s) 236
PsiI TTATAA 1 cut(s) 203
PstI CTGCAG 1 cut(s) 116
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 213
SetI ASST 5 cut(s) 39, 78, 137, 256, 332
SfaNI GCATC 2 cut(s) 4, 221
SfcI CTRYAG 1 cut(s) 112
Sse9I AATT 2 cut(s) 198, 428
SspMI CTAG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 3 cut(s) 305, 385, 412
TasI AATT 2 cut(s) 198, 428
TatI WGTACW 1 cut(s) 121
TscAI CASTG 1 cut(s) 116
TseFI GTSAC 2 cut(s) 137, 157
Tsp45I GTSAC 2 cut(s) 137, 157
TspDTI ATGAA 1 cut(s) 392
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 1 cut(s) 116
XapI RAATTY 1 cut(s) 428
XspI CTAG 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.