Rroxscaffold_6G00425100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000565
Physical Location & Seq
Forward (+)
46109501 .. 46109686
186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00425100.1

Sequence Viewer

Length: 186 bp
ATGAGCGAGCGATGCGGAAGTGAACCGGTCGCCGTACTAGAAACTCAAATCGATCAAGAGATCGGATCGGTACAGGCCGAGTCCCGAGTTGCAACCATTTTCGCCGATCGCGAAGCCGCCACCGCCTCGGACCCTCGATTCGCCGTCGCCGATGACGTCTTGAGTTCTTCCAATCCACCGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

61

Amino Acids

6.42

Weight (kDa)

4.06

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 159
AccII CGCG 1 cut(s) 111
AciI CCGC 4 cut(s) 15, 117, 123, 179
AclWI GGATC 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 156
AfaI GTAC 2 cut(s) 36, 72
AgeI ACCGGT 1 cut(s) 25
AlwI GGATC 1 cut(s) 73
Ama87I CYCGRG 1 cut(s) 84
AoxI GGCC 1 cut(s) 75
ArsI GACNNNNNNTTYG 2 cut(s) 122, 154
AsiGI ACCGGT 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 130
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 1 cut(s) 130
BceAI ACGGC 2 cut(s) 17, 128
BfaI CTAG 1 cut(s) 38
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 130
BmeT110I CYCGRG 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 130
BmiI GGNNCC 1 cut(s) 132
BmsI GCATC 1 cut(s) 2
BpuEI CTTGAG 1 cut(s) 181
Bsa29I ATCGAT 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 1 cut(s) 25
Bse118I RCCGGY 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 111
Bsh1285I CGRYCG 2 cut(s) 30, 109
BshFI GGCC 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 51
BsiEI CGRYCG 2 cut(s) 30, 109
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 1 cut(s) 26
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 1 cut(s) 77
BsoBI CYCGRG 1 cut(s) 84
Bsp143I GATC 4 cut(s) 52, 60, 65, 106
Bsp68I TCGCGA 1 cut(s) 111
BspACI CCGC 4 cut(s) 15, 117, 123, 179
BspANI GGCC 1 cut(s) 77
BspDI ATCGAT 1 cut(s) 51
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 4 cut(s) 52, 60, 65, 106
BssNI GRCGYC 1 cut(s) 156
BstACI GRCGYC 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 8
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 4 cut(s) 55, 63, 68, 109
BstMBI GATC 4 cut(s) 52, 60, 65, 106
BstMCI CGRYCG 2 cut(s) 30, 109
BstMWI GCNNNNNNNGC 2 cut(s) 12, 122
BstUI CGCG 1 cut(s) 111
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 1 cut(s) 77
BsuTUI ATCGAT 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 25
BtuMI TCGCGA 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 8
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 130
ClaI ATCGAT 1 cut(s) 51
Csp6I GTAC 2 cut(s) 35, 71
CspAI ACCGGT 1 cut(s) 25
CviAII CATG 1 cut(s) 183
CviJI RGCY 2 cut(s) 77, 116
CviKI_1 RGCY 2 cut(s) 77, 116
CviQI GTAC 2 cut(s) 35, 71
DpnI GATC 4 cut(s) 54, 62, 67, 108
DpnII GATC 4 cut(s) 52, 60, 65, 106
Eco47I GGWCC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 84
FaeI CATG 1 cut(s) 186
FaiI YATR 1 cut(s) 184
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 38
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 77
HapII CCGG 1 cut(s) 26
Hin1I GRCGYC 1 cut(s) 156
Hin1II CATG 1 cut(s) 186
HinfI GANTC 2 cut(s) 80, 138
HpaII CCGG 1 cut(s) 26
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 2 cut(s) 65, 130
Hpy188III TCNNGA 4 cut(s) 56, 84, 110, 160
Hpy8I GTNNAC 1 cut(s) 23
Hpy99I CGWCG 1 cut(s) 149
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 12, 122
HpySE526I ACGT 1 cut(s) 156
Hsp92I GRCGYC 1 cut(s) 156
Hsp92II CATG 1 cut(s) 186
Kzo9I GATC 4 cut(s) 52, 60, 65, 106
LpnPI CCDG 2 cut(s) 39, 59
LweI GCATC 1 cut(s) 2
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 156
MalI GATC 4 cut(s) 54, 62, 67, 108
MboI GATC 4 cut(s) 52, 60, 65, 106
MboII GAAGA 1 cut(s) 159
MlyI GAGTC 1 cut(s) 89
MnlI CCTC 2 cut(s) 136, 144
MslI CAYNNNNRTG 1 cut(s) 181
MspI CCGG 1 cut(s) 26
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 12, 122
NdeII GATC 4 cut(s) 52, 60, 65, 106
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 1 cut(s) 132
NmeAIII GCCGAG 1 cut(s) 103
NruI TCGCGA 1 cut(s) 111
PcsI WCGNNNNNNNCGW 3 cut(s) 108, 147, 153
PfeI GAWTC 1 cut(s) 138
PinAI ACCGGT 1 cut(s) 25
PkrI GCNGC 1 cut(s) 118
Ple19I CGATCG 1 cut(s) 109
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 130
PvuI CGATCG 1 cut(s) 109
RruI TCGCGA 1 cut(s) 111
RsaI GTAC 2 cut(s) 36, 72
RsaNI GTAC 2 cut(s) 35, 71
RseI CAYNNNNRTG 1 cut(s) 181
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 4 cut(s) 52, 60, 65, 106
Sau96I GGNCC 1 cut(s) 130
SchI GAGTC 1 cut(s) 89
SetI ASST 1 cut(s) 159
SfaNI GCATC 1 cut(s) 2
SinI GGWCC 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 181
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
SsiI CCGC 4 cut(s) 15, 117, 123, 179
SspMI CTAG 1 cut(s) 38
TaiI ACGT 1 cut(s) 159
TaqI TCGA 2 cut(s) 51, 136
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 130
XspI CTAG 1 cut(s) 38
ZraI GACGTC 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.