Rh6BG408900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000565
Physical Location & Seq
Reverse (-)
63454732 .. 63454938
207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG408900.1

Sequence Viewer

Length: 207 bp
ATGTCCGTCGGAATCGTCACGCTCGAAATGCGGAGCCACAACTCCACGAGTAGCGACGCCGGAAGTGAACCAGTCGCCATACCGGAAACTCAACTCGATCAAGAGATAAGATCAATACAGGCCGAGTCTCGAGTTGCAGCCACTGCCGTCGATCGCAAAGCCGCCGCGGCCTCAAAACCCGATTCGCCGTCGCCGATGACGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

68

Amino Acids

7.07

Weight (kDa)

4.83

Isoelectric Point (pI)

61.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 203
AccII CGCG 1 cut(s) 167
AciI CCGC 4 cut(s) 31, 162, 165, 167
AcyI GRCGYC 2 cut(s) 57, 200
Alw26I GTCTC 1 cut(s) 132
AlwNI CAGNNNCTG 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 2 cut(s) 120, 168
ApeKI GCWGC 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 129
BauI CACGAG 1 cut(s) 46
BbvI GCAGC 1 cut(s) 149
BceAI ACGGC 2 cut(s) 131, 172
BcoDI GTCTC 1 cut(s) 132
BglI GCCNNNNNGGC 1 cut(s) 167
BisI GCNGC 4 cut(s) 138, 162, 165, 168
BlsI GCNGC 4 cut(s) 139, 163, 166, 169
BmeT110I CYCGRG 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 35
BsaHI GRCGYC 2 cut(s) 57, 200
BsaJI CCNNGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 167
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 122, 170
BsiEI CGRYCG 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 2 cut(s) 60, 83
BsmAI GTCTC 1 cut(s) 132
BsnI GGCC 2 cut(s) 122, 170
BsoBI CYCGRG 1 cut(s) 129
Bsp143I GATC 3 cut(s) 97, 110, 151
BspACI CCGC 4 cut(s) 31, 162, 165, 167
BspANI GGCC 2 cut(s) 122, 170
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 3 cut(s) 97, 110, 151
BssNI GRCGYC 2 cut(s) 57, 200
BssSI CACGAG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 46
BstACI GRCGYC 2 cut(s) 57, 200
BstAPI GCANNNNNTGC 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 165
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 3 cut(s) 100, 113, 154
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 3 cut(s) 97, 110, 151
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 28, 143, 167
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 149
BsuRI GGCC 2 cut(s) 122, 170
BtgI CCRYGG 1 cut(s) 165
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 143
Cfr42I CCGCGG 1 cut(s) 168
CseI GACGC 1 cut(s) 65
CviJI RGCY 5 cut(s) 36, 122, 140, 161, 170
CviKI_1 RGCY 5 cut(s) 36, 122, 140, 161, 170
DpnI GATC 3 cut(s) 99, 112, 153
DpnII GATC 3 cut(s) 97, 110, 151
Eco88I CYCGRG 1 cut(s) 129
FaiI YATR 1 cut(s) 80
Fnu4HI GCNGC 4 cut(s) 138, 162, 165, 168
Fsp4HI GCNGC 4 cut(s) 138, 162, 165, 168
GluI GCNGC 4 cut(s) 138, 162, 165, 168
HaeIII GGCC 2 cut(s) 122, 170
HapII CCGG 2 cut(s) 60, 83
HgaI GACGC 1 cut(s) 65
Hin1I GRCGYC 2 cut(s) 57, 200
HinfI GANTC 3 cut(s) 12, 125, 182
HpaII CCGG 2 cut(s) 60, 83
Hpy166II GTNNAC 1 cut(s) 68
Hpy188I TCNGA 1 cut(s) 11
Hpy188III TCNNGA 3 cut(s) 101, 129, 204
Hpy8I GTNNAC 1 cut(s) 68
Hpy99I CGWCG 4 cut(s) 11, 59, 152, 193
HpyCH4IV ACGT 1 cut(s) 200
HpyCH4V TGCA 1 cut(s) 137
HpyF10VI GCNNNNNNNGC 3 cut(s) 28, 143, 167
HpySE526I ACGT 1 cut(s) 200
Hsp92I GRCGYC 2 cut(s) 57, 200
KspI CCGCGG 1 cut(s) 168
Kzo9I GATC 3 cut(s) 97, 110, 151
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 4 cut(s) 73, 84, 96, 104
Lsp1109I GCAGC 1 cut(s) 149
MaeII ACGT 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 99, 112, 153
MboI GATC 3 cut(s) 97, 110, 151
MlyI GAGTC 1 cut(s) 134
MnlI CCTC 1 cut(s) 181
MspA1I CMGCKG 1 cut(s) 167
MspI CCGG 2 cut(s) 60, 83
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 28, 143, 167
NdeII GATC 3 cut(s) 97, 110, 151
NlaIV GGNNCC 1 cut(s) 35
NmeAIII GCCGAG 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 16
PaeR7I CTCGAG 1 cut(s) 129
PcsI WCGNNNNNNNCGW 3 cut(s) 21, 191, 197
PfeI GAWTC 2 cut(s) 12, 182
PkrI GCNGC 4 cut(s) 139, 163, 166, 169
Ple19I CGATCG 1 cut(s) 154
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 143
PvuI CGATCG 1 cut(s) 154
SacII CCGCGG 1 cut(s) 168
SatI GCNGC 4 cut(s) 138, 162, 165, 168
Sau3AI GATC 3 cut(s) 97, 110, 151
SchI GAGTC 1 cut(s) 134
SetI ASST 1 cut(s) 203
Sfr274I CTCGAG 1 cut(s) 129
Sfr303I CCGCGG 1 cut(s) 168
SgrBI CCGCGG 1 cut(s) 168
SlaI CTCGAG 1 cut(s) 129
SmlI CTYRAG 1 cut(s) 129
SmoI CTYRAG 1 cut(s) 129
SsiI CCGC 4 cut(s) 31, 162, 165, 167
TaiI ACGT 1 cut(s) 203
TaqI TCGA 4 cut(s) 24, 96, 130, 150
TauI GCSGC 3 cut(s) 164, 167, 170
TfiI GAWTC 2 cut(s) 12, 182
TscAI CASTG 1 cut(s) 148
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 137
Tsp45I GTSAC 1 cut(s) 16
TspRI CASTG 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 129
ZraI GACGTC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.