Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Reverse (-)

34028619 .. 34029782

Gene Structure 1164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG318000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCTGTCGGAATCGTCACGCTCGCTTTTTTTCTCTACTGCCACCGAGTCAAGCACCAATCGGAGACTCAGACACTCGTTAATGGCGGAGGGAGCAGCTCGCAGTGGTTCGCCAACAATTCCAGAGCGCGCCTTCGAGCTTCCTCTATATCGGCACCGTCGAGTAGAGCCACAACTCCACGAGTAGCGACGCTTGAAGTGAACCGGTCGCCGTACTGGAAACTCAACTCGATCAAGAGATCGGATAGATATAGGCCGAGTCCCGAGTTTGCAGCCACTTCCGCCGATCGCAAAGCCGCTGCCGCCTCAGAACCCGATTCGCCATCGCCGGTGACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

113

Amino Acids

12.29

Weight (kDa)

10.6

Isoelectric Point (pI)

67.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccII	CGCG	1 cut(s)	130
AciI	CCGC	4 cut(s)	87, 282, 297, 303
AfaI	GTAC	1 cut(s)	215
AgeI	ACCGGT	1 cut(s)	204
AgsI	TTSAA	1 cut(s)	197
AluBI	AGCT	2 cut(s)	99, 140
AluI	AGCT	2 cut(s)	99, 140
Alw26I	GTCTC	1 cut(s)	59
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	1 cut(s)	254
ApeKI	GCWGC	3 cut(s)	96, 272, 299
AsiGI	ACCGGT	1 cut(s)	204
AspLEI	GCGC	2 cut(s)	130, 132
AvaI	CYCGRG	1 cut(s)	263
BanI	GGYRCC	1 cut(s)	154
BauI	CACGAG	1 cut(s)	180
BbvI	GCAGC	3 cut(s)	108, 284, 286
BccI	CCATC	1 cut(s)	331
BceAI	ACGGC	1 cut(s)	196
BcoDI	GTCTC	1 cut(s)	59
BisI	GCNGC	5 cut(s)	97, 273, 297, 300, 303
BlsI	GCNGC	5 cut(s)	98, 274, 298, 301, 304
BmeT110I	CYCGRG	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	204
Bse118I	RCCGGY	2 cut(s)	204, 328
Bse1I	ACTGG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	83, 321
BseNI	ACTGG	1 cut(s)	221
BsePI	GCGCGC	1 cut(s)	128
BseXI	GCAGC	3 cut(s)	108, 284, 286
Bsh1236I	CGCG	1 cut(s)	130
Bsh1285I	CGRYCG	2 cut(s)	209, 289
BshFI	GGCC	1 cut(s)	256
BshNI	GGYRCC	1 cut(s)	154
BshTI	ACCGGT	1 cut(s)	204
BsiEI	CGRYCG	2 cut(s)	209, 289
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	2 cut(s)	205, 329
BslFI	GGGAC	1 cut(s)	246
BsmAI	GTCTC	1 cut(s)	59
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	256
BsoBI	CYCGRG	1 cut(s)	263
Bsp143I	GATC	3 cut(s)	231, 239, 286
BspACI	CCGC	4 cut(s)	87, 282, 297, 303
BspANI	GGCC	1 cut(s)	256
BspCNI	CTCAG	2 cut(s)	82, 320
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	156
BspT107I	GGYRCC	1 cut(s)	154
BsrFI	RCCGGY	2 cut(s)	204, 328
BsrI	ACTGG	1 cut(s)	221
BssAI	RCCGGY	2 cut(s)	204, 328
BssHII	GCGCGC	1 cut(s)	128
BssMI	GATC	3 cut(s)	231, 239, 286
BssSI	CACGAG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	180
Bst4CI	ACNGT	1 cut(s)	159
BstC8I	GCNNGC	3 cut(s)	24, 101, 130
BstDEI	CTNAG	2 cut(s)	69, 307
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	2 cut(s)	130, 132
BstKTI	GATC	3 cut(s)	234, 242, 289
BstMAI	GTCTC	1 cut(s)	59
BstMBI	GATC	3 cut(s)	231, 239, 286
BstMCI	CGRYCG	2 cut(s)	209, 289
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 281, 302
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	3 cut(s)	108, 284, 286
BsuRI	GGCC	1 cut(s)	256
BtgZI	GCGATG	1 cut(s)	309
BtsI	GCAGTG	1 cut(s)	110
BtsIMutI	CAGTG	1 cut(s)	110
Cac8I	GCNNGC	3 cut(s)	24, 101, 130
CfoI	GCGC	2 cut(s)	130, 132
Cfr10I	RCCGGY	2 cut(s)	204, 328
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	214
CspAI	ACCGGT	1 cut(s)	204
CviJI	RGCY	6 cut(s)	99, 140, 170, 256, 275, 296
CviKI_1	RGCY	6 cut(s)	99, 140, 170, 256, 275, 296
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	69, 307
DpnI	GATC	3 cut(s)	233, 241, 288
DpnII	GATC	3 cut(s)	231, 239, 286
EciI	GGCGGA	2 cut(s)	102, 271
Eco88I	CYCGRG	1 cut(s)	263
FaiI	YATR	2 cut(s)	149, 252
FaqI	GGGAC	1 cut(s)	246
Fnu4HI	GCNGC	5 cut(s)	97, 273, 297, 300, 303
Fsp4HI	GCNGC	5 cut(s)	97, 273, 297, 300, 303
GlaI	GCGC	2 cut(s)	129, 131
GluI	GCNGC	5 cut(s)	97, 273, 297, 300, 303
HaeIII	GGCC	1 cut(s)	256
HapII	CCGG	2 cut(s)	205, 329
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	2 cut(s)	130, 132
Hin6I	GCGC	2 cut(s)	128, 130
HinP1I	GCGC	2 cut(s)	128, 130
HinfI	GANTC	5 cut(s)	12, 48, 67, 259, 317
HpaII	CCGG	2 cut(s)	205, 329
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	5 cut(s)	11, 64, 72, 244, 310
Hpy188III	TCNNGA	4 cut(s)	123, 235, 263, 339
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	2 cut(s)	163, 193
HpyAV	CCTTC	1 cut(s)	143
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 281, 302
HpyF3I	CTNAG	2 cut(s)	69, 307
HspAI	GCGC	2 cut(s)	128, 130
Kzo9I	GATC	3 cut(s)	231, 239, 286
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	3 cut(s)	136, 202, 218
Lsp1109I	GCAGC	3 cut(s)	108, 284, 286
MaeIII	GTNAC	2 cut(s)	16, 331
MalI	GATC	3 cut(s)	233, 241, 288
MboI	GATC	3 cut(s)	231, 239, 286
MluCI	AATT	1 cut(s)	118
MlyI	GAGTC	3 cut(s)	57, 61, 268
MnlI	CCTC	3 cut(s)	83, 154, 316
MseI	TTAA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	2 cut(s)	205, 329
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	3 cut(s)	93, 281, 302
NdeII	GATC	3 cut(s)	231, 239, 286
NlaIV	GGNNCC	1 cut(s)	156
NmeAIII	GCCGAG	1 cut(s)	282
NmuCI	GTSAC	2 cut(s)	16, 331
PauI	GCGCGC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	158
PfeI	GAWTC	2 cut(s)	12, 317
PinAI	ACCGGT	1 cut(s)	204
PkrI	GCNGC	5 cut(s)	98, 274, 298, 301, 304
Ple19I	CGATCG	1 cut(s)	289
PleI	GAGTC	3 cut(s)	56, 61, 267
PpsI	GAGTC	3 cut(s)	56, 61, 267
PspN4I	GGNNCC	1 cut(s)	156
PteI	GCGCGC	1 cut(s)	128
PvuI	CGATCG	1 cut(s)	289
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	5 cut(s)	97, 273, 297, 300, 303
Sau3AI	GATC	3 cut(s)	231, 239, 286
SchI	GAGTC	3 cut(s)	57, 61, 268
SetI	ASST	2 cut(s)	101, 142
SgrAI	CRCCGGYG	1 cut(s)	328
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	4 cut(s)	87, 282, 297, 303
TaaI	ACNGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	136, 161, 230
TasI	AATT	1 cut(s)	118
TauI	GCSGC	2 cut(s)	299, 305
TfiI	GAWTC	2 cut(s)	12, 317
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	110
TseFI	GTSAC	2 cut(s)	16, 331
TseI	GCWGC	3 cut(s)	96, 272, 299
Tsp45I	GTSAC	2 cut(s)	16, 331
TspRI	CASTG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.