RLG00000023770

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
28042760 .. 28044625
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023770

Sequence Viewer

Length: 489 bp
ATGCGGACCAGCATGGATTTGATTCATGAGACGTCGGCCCAGATTGCAGGATCAGTGATGCTACTAATCAATGGAATCTTGGGCCAGCCCCGGCCGCAGATCCATCAAATTCGGGTTCAGATGCAAGCTATTAATCTCGCTGTTAATGCCATTGAAGATCTGCTATTGGGGCTCCACCGTGGTTGCCTGGTTGTAGTTGCGGCCCAAATCAATGGCAGTGCTCACTCCCACATTCAAATCGGATTGGCTGATTTGGACTATGCATTGGGTAGGTTTCTAGCGGGGAATAATAAACTTTTTGCTAATCTCCCCAGTTTGATGCTGACGAAATTTGAGACCAAGAGTAACCGTGCCAAGGGGCTGAGCTTCCCCAGCAAGAGGCCATGGATTTTGGCGAGTCTTCATAGCGGACCTCGAACTCAAATCGCCGTAGCGGCAAATAGAGCCATCGTGGATGACGCTGCACCGCTTCGACAACGCGTCGAGTAG

Protein Analysis

163

Amino Acids

17.57

Weight (kDa)

10.26

Isoelectric Point (pI)

30.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 35
AccII CGCG 1 cut(s) 480
AciI CCGC 7 cut(s) 4, 95, 200, 281, 408, 434, 467
AclWI GGATC 2 cut(s) 58, 94
AcoI YGGCCR 1 cut(s) 92
AcsI RAATTY 2 cut(s) 108, 329
AcyI GRCGYC 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 355, 378
AflIII ACRYGT 1 cut(s) 478
AgsI TTSAA 2 cut(s) 155, 236
AhdI GACNNNNNGTC 1 cut(s) 479
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 2 cut(s) 128, 366
AluI AGCT 2 cut(s) 128, 366
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 23, 329
AlwI GGATC 2 cut(s) 58, 94
AoxI GGCC 5 cut(s) 36, 82, 92, 201, 380
ApeKI GCWGC 1 cut(s) 461
ApoI RAATTY 2 cut(s) 108, 329
AseI ATTAAT 1 cut(s) 132
AspS9I GGNCC 5 cut(s) 6, 37, 82, 202, 410
AsuC2I CCSGG 1 cut(s) 91
AvaII GGWCC 2 cut(s) 6, 410
BanII GRGCYC 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 392
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 448
BccI CCATC 2 cut(s) 111, 455
BceAI ACGGC 1 cut(s) 413
BciT130I CCWGG 1 cut(s) 188
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 23, 329
BfaI CTAG 1 cut(s) 278
BglI GCCNNNNNGGC 1 cut(s) 434
BglII AGATCT 1 cut(s) 157
BisI GCNGC 4 cut(s) 95, 201, 435, 462
BlpI GCTNAGC 1 cut(s) 362
BlsI GCNGC 4 cut(s) 96, 202, 436, 463
Bme1390I CCNGG 2 cut(s) 91, 188
Bme18I GGWCC 2 cut(s) 6, 410
BmeRI GACNNNNNGTC 1 cut(s) 479
BmgT120I GGNCC 5 cut(s) 6, 37, 82, 202, 410
BmiI GGNNCC 1 cut(s) 173
BmrFI CCNGG 2 cut(s) 91, 188
BmrI ACTGGG 1 cut(s) 306
BmsI GCATC 3 cut(s) 48, 111, 309
BmuI ACTGGG 1 cut(s) 306
BpiI GAAGAC 1 cut(s) 392
Bpu1102I GCTNAGC 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 329
BsaJI CCNNGG 4 cut(s) 89, 178, 354, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 355, 378
Bse1I ACTGG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 4 cut(s) 89, 178, 354, 383
BseGI GGATG 1 cut(s) 460
BseLI CCNNNNNNNGG 2 cut(s) 355, 378
BseMII CTCAG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 312
BseX3I CGGCCG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 448
BseYI CCCAGC 1 cut(s) 371
BsgI GTGCAG 1 cut(s) 447
Bsh1236I CGCG 1 cut(s) 480
Bsh1285I CGRYCG 1 cut(s) 95
BshFI GGCC 5 cut(s) 38, 84, 94, 203, 382
BsiEI CGRYCG 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 91
BslI CCNNNNNNNGG 2 cut(s) 355, 378
BsmAI GTCTC 2 cut(s) 23, 329
BsmBI CGTCTC 1 cut(s) 23
BsnI GGCC 5 cut(s) 38, 84, 94, 203, 382
Bso31I GGTCTC 1 cut(s) 329
Bsp1286I GDGCHC 2 cut(s) 174, 223
Bsp143I GATC 3 cut(s) 50, 99, 157
Bsp1720I GCTNAGC 1 cut(s) 362
Bsp19I CCATGG 1 cut(s) 383
BspACI CCGC 7 cut(s) 4, 95, 200, 281, 408, 434, 467
BspANI GGCC 5 cut(s) 38, 84, 94, 203, 382
BspCNI CTCAG 1 cut(s) 354
BspFNI CGCG 1 cut(s) 480
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 173
BspPI GGATC 2 cut(s) 58, 94
BspTNI GGTCTC 1 cut(s) 329
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 4 cut(s) 89, 178, 354, 383
BssMI GATC 3 cut(s) 50, 99, 157
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 354, 383
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 179, 350
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 86, 126
BstDEI CTNAG 1 cut(s) 362
BstDSI CCRYGG 2 cut(s) 178, 383
BstF5I GGATG 1 cut(s) 460
BstFNI CGCG 1 cut(s) 480
BstKTI GATC 3 cut(s) 53, 102, 160
BstMAI GTCTC 2 cut(s) 23, 329
BstMBI GATC 3 cut(s) 50, 99, 157
BstMCI CGRYCG 1 cut(s) 95
BstMWI GCNNNNNNNGC 7 cut(s) 44, 94, 146, 169, 372, 434, 443
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 89, 186
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 1 cut(s) 448
BstV2I GAAGAC 1 cut(s) 392
BstX2I RGATCY 2 cut(s) 99, 157
BstXI CCANNNNNNTGG 1 cut(s) 212
BstYI RGATCY 2 cut(s) 99, 157
BstZI CGGCCG 1 cut(s) 92
BsuRI GGCC 5 cut(s) 38, 84, 94, 203, 382
BtgI CCRYGG 2 cut(s) 178, 383
BtsCI GGATG 1 cut(s) 460
BtsI GCAGTG 1 cut(s) 223
BtsIMutI CAGTG 2 cut(s) 60, 223
Cac8I GCNNGC 2 cut(s) 86, 126
CciI TCATGA 1 cut(s) 25
Cfr13I GGNCC 5 cut(s) 6, 37, 82, 202, 410
CseI GACGC 2 cut(s) 467, 469
CspCI CAANNNNNGTGG 2 cut(s) 164, 199
CviAII CATG 3 cut(s) 13, 26, 384
DdeI CTNAG 1 cut(s) 362
DpnI GATC 3 cut(s) 52, 101, 159
DpnII GATC 3 cut(s) 50, 99, 157
DriI GACNNNNNGTC 1 cut(s) 479
EaeI YGGCCR 1 cut(s) 92
EagI CGGCCG 1 cut(s) 92
Eam1105I GACNNNNNGTC 1 cut(s) 479
EclXI CGGCCG 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 354, 383
Eco24I GRGCYC 1 cut(s) 174
Eco31I GGTCTC 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 6, 410
Eco52I CGGCCG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 2 cut(s) 354, 383
EcoT22I ATGCAT 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 174
ErhI CCWWGG 2 cut(s) 354, 383
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 3 cut(s) 16, 29, 387
FaiI YATR 5 cut(s) 14, 27, 261, 385, 405
FatI CATG 3 cut(s) 12, 25, 383
FauI CCCGC 1 cut(s) 274
Fnu4HI GCNGC 4 cut(s) 95, 201, 435, 462
FokI GGATG 1 cut(s) 467
FriOI GRGCYC 1 cut(s) 174
Fsp4HI GCNGC 4 cut(s) 95, 201, 435, 462
FspBI CTAG 1 cut(s) 278
GluI GCNGC 4 cut(s) 95, 201, 435, 462
GsaI CCCAGC 1 cut(s) 375
HaeIII GGCC 5 cut(s) 38, 84, 94, 203, 382
HapII CCGG 1 cut(s) 91
HgaI GACGC 2 cut(s) 467, 469
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 3 cut(s) 16, 29, 387
HinfI GANTC 3 cut(s) 22, 75, 397
HpaII CCGG 1 cut(s) 91
Hpy188I TCNGA 2 cut(s) 120, 242
Hpy188III TCNNGA 1 cut(s) 26
Hpy99I CGWCG 2 cut(s) 37, 485
HpyCH4III ACNGT 2 cut(s) 179, 350
HpyCH4IV ACGT 1 cut(s) 32
HpyCH4V TGCA 4 cut(s) 47, 124, 263, 464
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 94, 146, 169, 372, 434, 443
HpyF3I CTNAG 1 cut(s) 362
HpySE526I ACGT 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 3 cut(s) 16, 29, 387
Kzo9I GATC 3 cut(s) 50, 99, 157
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 9 cut(s) 22, 33, 53, 98, 104, 173, 200, 325, 385
Lsp1109I GCAGC 1 cut(s) 448
LweI GCATC 3 cut(s) 48, 111, 309
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 344
MalI GATC 3 cut(s) 52, 101, 159
MboI GATC 3 cut(s) 50, 99, 157
MboII GAAGA 2 cut(s) 167, 392
MflI RGATCY 2 cut(s) 99, 157
MhlI GDGCHC 2 cut(s) 174, 223
MluCI AATT 2 cut(s) 108, 329
MluI ACGCGT 1 cut(s) 478
MlyI GAGTC 1 cut(s) 406
MnlI CCTC 2 cut(s) 372, 423
Mph1103I ATGCAT 1 cut(s) 265
MseI TTAA 2 cut(s) 132, 144
MspI CCGG 1 cut(s) 91
MspR9I CCNGG 2 cut(s) 91, 188
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 7 cut(s) 44, 94, 146, 169, 372, 434, 443
NciI CCSGG 1 cut(s) 91
NcoI CCATGG 1 cut(s) 383
NdeII GATC 3 cut(s) 50, 99, 157
NlaIII CATG 3 cut(s) 16, 29, 387
NlaIV GGNNCC 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 265
PagI TCATGA 1 cut(s) 25
PfeI GAWTC 2 cut(s) 22, 75
PkrI GCNGC 4 cut(s) 96, 202, 436, 463
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PshBI ATTAAT 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 173
PspPI GGNCC 5 cut(s) 6, 37, 82, 202, 410
PsuI RGATCY 2 cut(s) 99, 157
SaqAI TTAA 2 cut(s) 132, 144
SatI GCNGC 4 cut(s) 95, 201, 435, 462
Sau3AI GATC 3 cut(s) 50, 99, 157
Sau96I GGNCC 5 cut(s) 6, 37, 82, 202, 410
SchI GAGTC 1 cut(s) 406
ScrFI CCNGG 2 cut(s) 91, 188
SduI GDGCHC 2 cut(s) 174, 223
SetI ASST 5 cut(s) 35, 130, 275, 368, 415
SfaNI GCATC 3 cut(s) 48, 111, 309
SinI GGWCC 2 cut(s) 6, 410
Sse9I AATT 2 cut(s) 108, 329
SsiI CCGC 7 cut(s) 4, 95, 200, 281, 408, 434, 467
SspMI CTAG 1 cut(s) 278
StyD4I CCNGG 2 cut(s) 89, 186
StyI CCWWGG 2 cut(s) 354, 383
TaaI ACNGT 2 cut(s) 179, 350
TaiI ACGT 1 cut(s) 35
TaqI TCGA 3 cut(s) 415, 472, 483
TasI AATT 2 cut(s) 108, 329
TauI GCSGC 3 cut(s) 97, 203, 437
TfiI GAWTC 2 cut(s) 22, 75
Tru1I TTAA 2 cut(s) 132, 144
Tru9I TTAA 2 cut(s) 132, 144
TscAI CASTG 2 cut(s) 60, 223
TseI GCWGC 1 cut(s) 461
TspDTI ATGAA 2 cut(s) 14, 392
TspRI CASTG 2 cut(s) 60, 223
VpaK11BI GGWCC 2 cut(s) 6, 410
VspI ATTAAT 1 cut(s) 132
XapI RAATTY 2 cut(s) 108, 329
XspI CTAG 1 cut(s) 278
ZraI GACGTC 1 cut(s) 33
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.