DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AdeI | CACNNNGTG | 1 cut(s) | 86 |
| AfaI | GTAC | 2 cut(s) | 153, 165 |
| AgsI | TTSAA | 2 cut(s) | 140, 191 |
| AjiI | CACGTC | 1 cut(s) | 86 |
| AjnI | CCWGG | 1 cut(s) | 132 |
| AluBI | AGCT | 2 cut(s) | 65, 102 |
| AluI | AGCT | 2 cut(s) | 65, 102 |
| Alw26I | GTCTC | 1 cut(s) | 183 |
| ApeKI | GCWGC | 2 cut(s) | 58, 170 |
| AspS9I | GGNCC | 1 cut(s) | 130 |
| AsuC2I | CCSGG | 1 cut(s) | 121 |
| AsuHPI | GGTGA | 1 cut(s) | 17 |
| AvaII | GGWCC | 1 cut(s) | 130 |
| AxyI | CCTNAGG | 1 cut(s) | 45 |
| BbsI | GAAGAC | 1 cut(s) | 32 |
| BbvI | GCAGC | 2 cut(s) | 70, 182 |
| BccI | CCATC | 1 cut(s) | 151 |
| BciT130I | CCWGG | 1 cut(s) | 134 |
| BcnI | CCSGG | 1 cut(s) | 121 |
| BcoDI | GTCTC | 1 cut(s) | 183 |
| BisI | GCNGC | 2 cut(s) | 59, 171 |
| BlpI | GCTNAGC | 1 cut(s) | 54 |
| BlsI | GCNGC | 2 cut(s) | 60, 172 |
| BmcAI | AGTACT | 1 cut(s) | 153 |
| Bme1390I | CCNGG | 2 cut(s) | 121, 134 |
| Bme18I | GGWCC | 1 cut(s) | 130 |
| BmgBI | CACGTC | 1 cut(s) | 86 |
| BmgT120I | GGNCC | 1 cut(s) | 130 |
| BmrFI | CCNGG | 2 cut(s) | 121, 134 |
| BpiI | GAAGAC | 1 cut(s) | 32 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 54 |
| BpuMI | CCSGG | 1 cut(s) | 121 |
| BsaI | GGTCTC | 1 cut(s) | 183 |
| Bse21I | CCTNAGG | 1 cut(s) | 45 |
| Bse3DI | GCAATG | 1 cut(s) | 36 |
| BseBI | CCWGG | 1 cut(s) | 134 |
| BseGI | GGATG | 1 cut(s) | 16 |
| BseMI | GCAATG | 1 cut(s) | 36 |
| BseMII | CTCAG | 1 cut(s) | 68 |
| BseXI | GCAGC | 2 cut(s) | 70, 182 |
| BsiSI | CCGG | 1 cut(s) | 120 |
| BsmAI | GTCTC | 1 cut(s) | 183 |
| Bso31I | GGTCTC | 1 cut(s) | 183 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 54 |
| BspCNI | CTCAG | 1 cut(s) | 67 |
| BspTNI | GGTCTC | 1 cut(s) | 183 |
| BsrDI | GCAATG | 1 cut(s) | 36 |
| Bst2UI | CCWGG | 1 cut(s) | 134 |
| BstC8I | GCNNGC | 1 cut(s) | 63 |
| BstDEI | CTNAG | 2 cut(s) | 45, 54 |
| BstF5I | GGATG | 1 cut(s) | 16 |
| BstMAI | GTCTC | 1 cut(s) | 183 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 167 |
| BstNI | CCWGG | 1 cut(s) | 134 |
| BstSCI | CCNGG | 2 cut(s) | 119, 132 |
| BstV1I | GCAGC | 2 cut(s) | 70, 182 |
| BstV2I | GAAGAC | 1 cut(s) | 32 |
| Bsu36I | CCTNAGG | 1 cut(s) | 45 |
| BtrI | CACGTC | 1 cut(s) | 86 |
| BtsCI | GGATG | 1 cut(s) | 16 |
| Cac8I | GCNNGC | 1 cut(s) | 63 |
| Cfr13I | GGNCC | 1 cut(s) | 130 |
| CsiI | ACCWGGT | 1 cut(s) | 132 |
| Csp6I | GTAC | 2 cut(s) | 152, 164 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 19, 54 |
| CviJI | RGCY | 3 cut(s) | 53, 65, 102 |
| CviKI_1 | RGCY | 3 cut(s) | 53, 65, 102 |
| CviQI | GTAC | 2 cut(s) | 152, 164 |
| DdeI | CTNAG | 2 cut(s) | 45, 54 |
| DraIII | CACNNNGTG | 1 cut(s) | 86 |
| Eco31I | GGTCTC | 1 cut(s) | 183 |
| Eco47I | GGWCC | 1 cut(s) | 130 |
| Eco81I | CCTNAGG | 1 cut(s) | 45 |
| EcoRII | CCWGG | 1 cut(s) | 132 |
| FaiI | YATR | 5 cut(s) | 20, 98, 106, 111, 128 |
| Fnu4HI | GCNGC | 2 cut(s) | 59, 171 |
| FokI | GGATG | 1 cut(s) | 23 |
| Fsp4HI | GCNGC | 2 cut(s) | 59, 171 |
| GluI | GCNGC | 2 cut(s) | 59, 171 |
| HapII | CCGG | 1 cut(s) | 120 |
| HindIII | AAGCTT | 2 cut(s) | 63, 100 |
| HpaII | CCGG | 1 cut(s) | 120 |
| HphI | GGTGA | 1 cut(s) | 17 |
| Hpy99I | CGWCG | 1 cut(s) | 87 |
| HpyCH4IV | ACGT | 1 cut(s) | 85 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 167 |
| HpyF3I | CTNAG | 2 cut(s) | 45, 54 |
| HpySE526I | ACGT | 1 cut(s) | 85 |
| LmnI | GCTCC | 1 cut(s) | 46 |
| LpnPI | CCDG | 4 cut(s) | 119, 133, 146, 152 |
| Lsp1109I | GCAGC | 2 cut(s) | 70, 182 |
| MabI | ACCWGGT | 1 cut(s) | 132 |
| MaeII | ACGT | 1 cut(s) | 85 |
| MaeIII | GTNAC | 2 cut(s) | 74, 86 |
| MboII | GAAGA | 2 cut(s) | 37, 60 |
| MnlI | CCTC | 1 cut(s) | 43 |
| MspI | CCGG | 1 cut(s) | 120 |
| MspR9I | CCNGG | 2 cut(s) | 121, 134 |
| MvaI | CCWGG | 1 cut(s) | 134 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 167 |
| NciI | CCSGG | 1 cut(s) | 121 |
| NmuCI | GTSAC | 1 cut(s) | 86 |
| PkrI | GCNGC | 2 cut(s) | 60, 172 |
| Psp6I | CCWGG | 1 cut(s) | 132 |
| PspGI | CCWGG | 1 cut(s) | 132 |
| PspPI | GGNCC | 1 cut(s) | 130 |
| RsaI | GTAC | 2 cut(s) | 153, 165 |
| RsaNI | GTAC | 2 cut(s) | 152, 164 |
| SatI | GCNGC | 2 cut(s) | 59, 171 |
| Sau96I | GGNCC | 1 cut(s) | 130 |
| ScaI | AGTACT | 1 cut(s) | 153 |
| ScrFI | CCNGG | 2 cut(s) | 121, 134 |
| SetI | ASST | 5 cut(s) | 67, 88, 104, 138, 179 |
| SexAI | ACCWGGT | 1 cut(s) | 132 |
| SinI | GGWCC | 1 cut(s) | 130 |
| StyD4I | CCNGG | 2 cut(s) | 119, 132 |
| TaiI | ACGT | 1 cut(s) | 88 |
| TatI | WGTACW | 2 cut(s) | 151, 163 |
| TseFI | GTSAC | 1 cut(s) | 86 |
| TseI | GCWGC | 2 cut(s) | 58, 170 |
| Tsp45I | GTSAC | 1 cut(s) | 86 |
| VpaK11BI | GGWCC | 1 cut(s) | 130 |
| ZrmI | AGTACT | 1 cut(s) | 153 |