Rroxscaffold_1G00041460

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
59336724 .. 59352524
15801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041460.1

Sequence Viewer

Length: 375 bp
ATGGGTCAATTTACTCATGTCGCAAGCAATGTTAGAAAAGCAGAACAAACACTAGAAGCTATGTCGCAAGCTATGATAATCTTCACAACTTGTGCTCCGGTGGTTAGGGGCGAGTTTTCGTGCAGCAGGTCAAGGGCTACGATGTTTGTCGGAGATGCTAAGGCTCTTTGTCCACAACTTGTCATTTTTCCTTATGATTTTGAAGTGTATGAGGAGGTCGACACACCGCCACAAGTGGCGGTCAAACGGTGGTCAACGCCGGTCAATCACCTCCGATGGTCACCAAATTTTGACAGCAGCTTCATCTCAACCCTTCTAGCATTTTTCTCAACTACACCAAGTTCAGAAAACAACTACAACTACCTCAACAATTAA

Protein Analysis

124

Amino Acids

14.0

Weight (kDa)

5.58

Isoelectric Point (pI)

59.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 219
AciI CCGC 2 cut(s) 227, 239
AcsI RAATTY 1 cut(s) 286
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 3 cut(s) 59, 71, 300
AluI AGCT 3 cut(s) 59, 71, 300
Alw21I GWGCWC 1 cut(s) 97
ApeKI GCWGC 2 cut(s) 123, 297
ApoI RAATTY 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 260, 273
Bbv12I GWGCWC 1 cut(s) 97
BbvI GCAGC 2 cut(s) 135, 309
BccI CCATC 1 cut(s) 270
BfaI CTAG 2 cut(s) 53, 317
BfuAI ACCTGC 1 cut(s) 117
BisI GCNGC 2 cut(s) 124, 298
BlsI GCNGC 2 cut(s) 125, 299
BmsI GCATC 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 159
BsaWI WCCGGW 1 cut(s) 97
BsaXI ACNNNNNCTCC 2 cut(s) 79, 109
Bse118I RCCGGY 1 cut(s) 259
Bse3DI GCAATG 1 cut(s) 34
BseMI GCAATG 1 cut(s) 34
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 135, 309
BsgI GTGCAG 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 97
BsiSI CCGG 2 cut(s) 98, 260
Bsp1286I GDGCHC 1 cut(s) 97
BspACI CCGC 2 cut(s) 227, 239
BspMI ACCTGC 1 cut(s) 117
BsrDI GCAATG 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 259
BssAI RCCGGY 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 25, 69
BstDEI CTNAG 1 cut(s) 159
BstEII GGTNACC 1 cut(s) 279
BstPI GGTNACC 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 135, 309
BveI ACCTGC 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 25, 69
Cfr10I RCCGGY 1 cut(s) 259
CviAII CATG 1 cut(s) 17
CviJI RGCY 5 cut(s) 59, 71, 137, 164, 300
CviKI_1 RGCY 5 cut(s) 59, 71, 137, 164, 300
DdeI CTNAG 1 cut(s) 159
Eco91I GGTNACC 1 cut(s) 279
EcoO65I GGTNACC 1 cut(s) 279
FaeI CATG 1 cut(s) 20
FaiI YATR 5 cut(s) 18, 62, 74, 195, 210
FatI CATG 1 cut(s) 16
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 2 cut(s) 124, 298
Fsp4HI GCNGC 2 cut(s) 124, 298
FspBI CTAG 2 cut(s) 53, 317
GluI GCNGC 2 cut(s) 124, 298
HapII CCGG 2 cut(s) 98, 260
Hin1II CATG 1 cut(s) 20
HincII GTYRAC 2 cut(s) 220, 255
HindII GTYRAC 2 cut(s) 220, 255
HpaII CCGG 2 cut(s) 98, 260
HphI GGTGA 2 cut(s) 260, 273
Hpy166II GTNNAC 3 cut(s) 173, 220, 255
Hpy188I TCNGA 3 cut(s) 152, 275, 346
Hpy8I GTNNAC 3 cut(s) 173, 220, 255
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4V TGCA 1 cut(s) 123
HpyF3I CTNAG 1 cut(s) 159
Hsp92II CATG 1 cut(s) 20
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 3 cut(s) 111, 112, 273
Lsp1109I GCAGC 2 cut(s) 135, 309
LweI GCATC 1 cut(s) 145
MaeI CTAG 2 cut(s) 53, 317
MaeIII GTNAC 1 cut(s) 279
MboII GAAGA 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 97
MluCI AATT 3 cut(s) 8, 286, 370
MmeI TCCRAC 1 cut(s) 130
MnlI CCTC 4 cut(s) 205, 208, 281, 374
MseI TTAA 1 cut(s) 373
MspI CCGG 2 cut(s) 98, 260
NlaIII CATG 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 279
PkrI GCNGC 2 cut(s) 125, 299
PspEI GGTNACC 1 cut(s) 279
SalI GTCGAC 1 cut(s) 218
SaqAI TTAA 1 cut(s) 373
SatI GCNGC 2 cut(s) 124, 298
SduI GDGCHC 1 cut(s) 97
SetI ASST 7 cut(s) 61, 73, 131, 219, 273, 302, 366
SfaNI GCATC 1 cut(s) 145
Sse9I AATT 3 cut(s) 8, 286, 370
SsiI CCGC 2 cut(s) 227, 239
SspMI CTAG 2 cut(s) 53, 317
TaaI ACNGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 219
TasI AATT 3 cut(s) 8, 286, 370
Tru1I TTAA 1 cut(s) 373
Tru9I TTAA 1 cut(s) 373
TseFI GTSAC 1 cut(s) 279
TseI GCWGC 2 cut(s) 123, 297
Tsp45I GTSAC 1 cut(s) 279
TspDTI ATGAA 1 cut(s) 292
XapI RAATTY 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 219
XspI CTAG 2 cut(s) 53, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.