RLG00000014208

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000565
Physical Location & Seq
Forward (+)
49360737 .. 49361183
447 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014208

Sequence Viewer

Length: 348 bp
ATGTCCGTCGGAATCATCATGCTTGAAATGCTGTCCGCGCTCACAGTGGCGCCTTCGAGCTTCCTCTATATCGGCACCTTAGAGCAGAGCCACAACTCCACGAGTAGCGACGCCATGAGCGGAGTTCTGAAAACTCAACAGATCGGATCGGTGCAGGCCGAGTCCCAAGTTGCAGCCACTTTCGACAATTGCGAAGCCGCCACCGCCTCAGAACCTCGATTTGCCGTTGATGACGTCTTGAGTTCGTCCCGAGTTGCAGCCACTTTCGACAATTGCGAAGCCGCCACCGCCTCAGAACCTCGATTTGCCGTTGATGACGTCTTGAGTTCTTCCTATCCACCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.0

Weight (kDa)

4.05

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 237, 321
AccB1I GGYRCC 2 cut(s) 49, 74
AccBSI CCGCTC 1 cut(s) 120
AccII CGCG 1 cut(s) 38
AciI CCGC 6 cut(s) 36, 120, 198, 204, 282, 288
AclWI GGATC 1 cut(s) 154
AcyI GRCGYC 4 cut(s) 50, 111, 234, 318
AgsI TTSAA 1 cut(s) 26
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
AlwI GGATC 1 cut(s) 154
Ama87I CYCGRG 1 cut(s) 249
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 2 cut(s) 173, 257
AspLEI GCGC 2 cut(s) 40, 52
AvaI CYCGRG 1 cut(s) 249
BanI GGYRCC 2 cut(s) 49, 74
BauI CACGAG 1 cut(s) 100
BbvI GCAGC 2 cut(s) 185, 269
BceAI ACGGC 2 cut(s) 209, 293
BfoI RGCGCY 1 cut(s) 53
BisI GCNGC 4 cut(s) 174, 198, 258, 282
BlsI GCNGC 4 cut(s) 175, 199, 259, 283
BmeT110I CYCGRG 1 cut(s) 249
BmiI GGNNCC 2 cut(s) 51, 76
BpuEI CTTGAG 2 cut(s) 259, 343
BsaHI GRCGYC 4 cut(s) 50, 111, 234, 318
BseMII CTCAG 2 cut(s) 222, 306
BseXI GCAGC 2 cut(s) 185, 269
BsgI GTGCAG 1 cut(s) 173
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 2 cut(s) 49, 74
BsiHKCI CYCGRG 1 cut(s) 249
BslFI GGGAC 2 cut(s) 148, 232
BsmFI GGGAC 2 cut(s) 148, 232
BsnI GGCC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 249
Bsp143I GATC 2 cut(s) 141, 146
BspACI CCGC 6 cut(s) 36, 120, 198, 204, 282, 288
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 2 cut(s) 221, 305
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 51, 76
BspPI GGATC 1 cut(s) 154
BspT107I GGYRCC 2 cut(s) 49, 74
BsrBI CCGCTC 1 cut(s) 120
BssMI GATC 2 cut(s) 141, 146
BssNI GRCGYC 4 cut(s) 50, 111, 234, 318
BssSI CACGAG 1 cut(s) 100
Bst2BI CACGAG 1 cut(s) 100
Bst4CI ACNGT 1 cut(s) 46
BstACI GRCGYC 4 cut(s) 50, 111, 234, 318
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 3 cut(s) 79, 208, 292
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 40, 52
BstKTI GATC 2 cut(s) 144, 149
BstMBI GATC 2 cut(s) 141, 146
BstMWI GCNNNNNNNGC 4 cut(s) 28, 37, 203, 287
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 2 cut(s) 185, 269
BsuRI GGCC 1 cut(s) 158
BtsIMutI CAGTG 1 cut(s) 51
Cac8I GCNNGC 1 cut(s) 156
CfoI GCGC 2 cut(s) 40, 52
CseI GACGC 1 cut(s) 119
CviAII CATG 3 cut(s) 19, 115, 345
CviJI RGCY 7 cut(s) 60, 90, 158, 176, 197, 260, 281
CviKI_1 RGCY 7 cut(s) 60, 90, 158, 176, 197, 260, 281
DdeI CTNAG 3 cut(s) 79, 208, 292
DinI GGCGCC 1 cut(s) 51
DpnI GATC 2 cut(s) 143, 148
DpnII GATC 2 cut(s) 141, 146
Eco88I CYCGRG 1 cut(s) 249
EgeI GGCGCC 1 cut(s) 51
EheI GGCGCC 1 cut(s) 51
FaeI CATG 3 cut(s) 22, 118, 348
FaiI YATR 4 cut(s) 20, 69, 116, 346
FaqI GGGAC 2 cut(s) 148, 232
FatI CATG 3 cut(s) 18, 114, 344
Fnu4HI GCNGC 4 cut(s) 174, 198, 258, 282
Fsp4HI GCNGC 4 cut(s) 174, 198, 258, 282
GlaI GCGC 2 cut(s) 39, 51
GluI GCNGC 4 cut(s) 174, 198, 258, 282
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 1 cut(s) 158
HgaI GACGC 1 cut(s) 119
HhaI GCGC 2 cut(s) 40, 52
Hin1I GRCGYC 4 cut(s) 50, 111, 234, 318
Hin1II CATG 3 cut(s) 22, 118, 348
Hin6I GCGC 2 cut(s) 38, 50
HinP1I GCGC 2 cut(s) 38, 50
HinfI GANTC 2 cut(s) 12, 161
Hpy188I TCNGA 5 cut(s) 11, 129, 146, 211, 295
Hpy188III TCNNGA 3 cut(s) 238, 249, 322
Hpy99I CGWCG 2 cut(s) 11, 113
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 2 cut(s) 234, 318
HpyCH4V TGCA 3 cut(s) 154, 173, 257
HpyF10VI GCNNNNNNNGC 4 cut(s) 28, 37, 203, 287
HpyF3I CTNAG 3 cut(s) 79, 208, 292
HpySE526I ACGT 2 cut(s) 234, 318
Hsp92I GRCGYC 4 cut(s) 50, 111, 234, 318
Hsp92II CATG 3 cut(s) 22, 118, 348
HspAI GCGC 2 cut(s) 38, 50
KasI GGCGCC 1 cut(s) 49
Kzo9I GATC 2 cut(s) 141, 146
LpnPI CCDG 1 cut(s) 140
Lsp1109I GCAGC 2 cut(s) 185, 269
MaeII ACGT 2 cut(s) 234, 318
MalI GATC 2 cut(s) 143, 148
MbiI CCGCTC 1 cut(s) 120
MboI GATC 2 cut(s) 141, 146
MboII GAAGA 1 cut(s) 321
MfeI CAATTG 2 cut(s) 187, 271
MluCI AATT 2 cut(s) 187, 271
Mly113I GGCGCC 1 cut(s) 50
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 5 cut(s) 74, 217, 225, 301, 309
MslI CAYNNNNRTG 1 cut(s) 343
MunI CAATTG 2 cut(s) 187, 271
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 4 cut(s) 28, 37, 203, 287
NarI GGCGCC 1 cut(s) 50
NdeII GATC 2 cut(s) 141, 146
NlaIII CATG 3 cut(s) 22, 118, 348
NlaIV GGNNCC 2 cut(s) 51, 76
NmeAIII GCCGAG 1 cut(s) 184
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 273
PfeI GAWTC 1 cut(s) 12
PkrI GCNGC 4 cut(s) 175, 199, 259, 283
PleI GAGTC 1 cut(s) 169
PluTI GGCGCC 1 cut(s) 53
PpsI GAGTC 1 cut(s) 169
PspN4I GGNNCC 2 cut(s) 51, 76
RseI CAYNNNNRTG 1 cut(s) 343
SatI GCNGC 4 cut(s) 174, 198, 258, 282
Sau3AI GATC 2 cut(s) 141, 146
SchI GAGTC 1 cut(s) 170
SetI ASST 6 cut(s) 62, 80, 217, 237, 301, 321
SfoI GGCGCC 1 cut(s) 51
SmiMI CAYNNNNRTG 1 cut(s) 343
SmlI CTYRAG 2 cut(s) 238, 322
SmoI CTYRAG 2 cut(s) 238, 322
Sse9I AATT 2 cut(s) 187, 271
SsiI CCGC 6 cut(s) 36, 120, 198, 204, 282, 288
SspDI GGCGCC 1 cut(s) 49
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 2 cut(s) 237, 321
TaqI TCGA 5 cut(s) 56, 183, 217, 267, 301
TasI AATT 2 cut(s) 187, 271
TauI GCSGC 2 cut(s) 200, 284
TfiI GAWTC 1 cut(s) 12
TscAI CASTG 1 cut(s) 51
TseI GCWGC 2 cut(s) 173, 257
TspRI CASTG 1 cut(s) 51
ZraI GACGTC 2 cut(s) 235, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.