Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Forward (+)

69443746 .. 69444186

Gene Structure 441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG429900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGTCCGTCGCGTTTTTTCTCTACTGCCACCGAGTCAAGCACCAATCGGAGACTCAGAAACTTGTGATTGACCGAGGAAGCAGCTCGCAGTGGTTCGCCAACGATTCCAGAGCGGCCCCTTCGAGCTTCCTCTATATTGGCATCGTCGAGCAGAGTCACAACTCCATGAGTAGCGACGCCATGGGCGGAGCAACGTCGGAAGTGGATAGGTCGCCGTACCAGAAACTCAACAGATTGGATCGCTGGAGTTGGGATCCTCGAGTTGGATCTCGCAGTGGTCCTTGCAGGAGACGACCCGGAGGCGACCTGTCCAGATCTTGTCGGACTGGAGCCACTCGCCGCACTTGTACTTGCTGTACATTGACCGCGACGGGATTTTGTACACGACGACCTCACGCACCAGCAGCAGCATGTGCTCGAACGACTCCTCCCCGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

146

Amino Acids

16.16

Weight (kDa)

10.1

Isoelectric Point (pI)

86.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	113
AccII	CGCG	2 cut(s)	11, 368
AciI	CCGC	4 cut(s)	113, 186, 340, 366
AclWI	GGATC	4 cut(s)	246, 248, 261, 274
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	4 cut(s)	218, 349, 358, 382
AfiI	CCNNNNNNNGG	1 cut(s)	263
AloI	GAACNNNNNNTCC	1 cut(s)	412
AluBI	AGCT	2 cut(s)	84, 126
AluI	AGCT	2 cut(s)	84, 126
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	2 cut(s)	44, 283
AlwI	GGATC	4 cut(s)	246, 248, 261, 274
Ama87I	CYCGRG	1 cut(s)	258
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	3 cut(s)	81, 404, 407
AspS9I	GGNCC	2 cut(s)	115, 278
AsuC2I	CCSGG	1 cut(s)	297
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	278
BamHI	GGATCC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	3 cut(s)	93, 416, 419
BceAI	ACGGC	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	44, 283
BglII	AGATCT	1 cut(s)	314
BisI	GCNGC	5 cut(s)	82, 114, 340, 405, 408
BlsI	GCNGC	5 cut(s)	83, 115, 341, 406, 409
Bme1390I	CCNGG	1 cut(s)	297
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	2 cut(s)	115, 278
BmiI	GGNNCC	3 cut(s)	117, 255, 331
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	150
BpmI	CTGGAG	2 cut(s)	265, 348
BpuMI	CCSGG	1 cut(s)	297
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	73, 180
BsaXI	ACNNNNNCTCC	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse1I	ACTGG	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	73, 180
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	417
BseXI	GCAGC	3 cut(s)	93, 416, 419
Bsh1236I	CGCG	2 cut(s)	11, 368
BshFI	GGCC	1 cut(s)	116
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	44, 283
BsmBI	CGTCTC	1 cut(s)	283
BsnI	GGCC	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp1407I	TGTACA	2 cut(s)	356, 380
Bsp143I	GATC	4 cut(s)	238, 253, 266, 314
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	4 cut(s)	113, 186, 340, 366
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	2 cut(s)	11, 368
BspLI	GGNNCC	3 cut(s)	117, 255, 331
BspPI	GGATC	4 cut(s)	246, 248, 261, 274
BsrBI	CCGCTC	1 cut(s)	113
BsrGI	TGTACA	2 cut(s)	356, 380
BsrI	ACTGG	1 cut(s)	331
BssECI	CCNNGG	2 cut(s)	73, 180
BssMI	GATC	4 cut(s)	238, 253, 266, 314
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstAUI	TGTACA	2 cut(s)	356, 380
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	180
BstFNI	CGCG	2 cut(s)	11, 368
BstKTI	GATC	4 cut(s)	241, 256, 269, 317
BstMAI	GTCTC	2 cut(s)	44, 283
BstMBI	GATC	4 cut(s)	238, 253, 266, 314
BstMWI	GCNNNNNNNGC	2 cut(s)	404, 413
BstNSI	RCATGY	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	295
BstUI	CGCG	2 cut(s)	11, 368
BstV1I	GCAGC	3 cut(s)	93, 416, 419
BstX2I	RGATCY	3 cut(s)	253, 266, 314
BstYI	RGATCY	3 cut(s)	253, 266, 314
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	180
BtsI	GCAGTG	2 cut(s)	95, 280
BtsIMutI	CAGTG	2 cut(s)	95, 280
Cac8I	GCNNGC	1 cut(s)	86
Cfr13I	GGNCC	2 cut(s)	115, 278
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	4 cut(s)	217, 348, 357, 381
CviAII	CATG	3 cut(s)	166, 181, 411
CviJI	RGCY	4 cut(s)	84, 116, 126, 332
CviKI_1	RGCY	4 cut(s)	84, 116, 126, 332
CviQI	GTAC	4 cut(s)	217, 348, 357, 381
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	4 cut(s)	240, 255, 268, 316
DpnII	GATC	4 cut(s)	238, 253, 266, 314
EciI	GGCGGA	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	278
Eco88I	CYCGRG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	3 cut(s)	169, 184, 414
FaiI	YATR	4 cut(s)	135, 167, 182, 412
FatI	CATG	3 cut(s)	165, 180, 410
Fnu4HI	GCNGC	5 cut(s)	82, 114, 340, 405, 408
Fsp4HI	GCNGC	5 cut(s)	82, 114, 340, 405, 408
GluI	GCNGC	5 cut(s)	82, 114, 340, 405, 408
GsuI	CTGGAG	2 cut(s)	265, 348
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	297
HgaI	GACGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	169, 184, 414
HinfI	GANTC	5 cut(s)	33, 52, 104, 154, 424
HpaII	CCGG	1 cut(s)	297
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	4 cut(s)	49, 57, 199, 324
Hpy188III	TCNNGA	2 cut(s)	108, 312
Hpy8I	GTNNAC	1 cut(s)	383
Hpy99I	CGWCG	6 cut(s)	11, 149, 179, 199, 373, 390
HpyAV	CCTTC	1 cut(s)	129
HpyCH4IV	ACGT	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	404, 413
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	194
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	169, 184, 414
Kzo9I	GATC	4 cut(s)	238, 253, 266, 314
LmnI	GCTCC	2 cut(s)	188, 329
LpnPI	CCDG	9 cut(s)	121, 229, 233, 271, 310, 312, 320, 325, 414
Lsp1109I	GCAGC	3 cut(s)	93, 416, 419
LweI	GCATC	1 cut(s)	150
MaeII	ACGT	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	4 cut(s)	240, 255, 268, 316
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	4 cut(s)	238, 253, 266, 314
MflI	RGATCY	3 cut(s)	253, 266, 314
MhlI	GDGCHC	1 cut(s)	418
MlyI	GAGTC	4 cut(s)	42, 46, 163, 418
MmeI	TCCRAC	3 cut(s)	177, 244, 302
MnlI	CCTC	6 cut(s)	68, 140, 267, 293, 402, 438
MspI	CCGG	1 cut(s)	297
MspR9I	CCNGG	1 cut(s)	297
MvnI	CGCG	2 cut(s)	11, 368
MwoI	GCNNNNNNNGC	2 cut(s)	404, 413
NciI	CCSGG	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	4 cut(s)	238, 253, 266, 314
NlaIII	CATG	3 cut(s)	169, 184, 414
NlaIV	GGNNCC	3 cut(s)	117, 255, 331
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	1 cut(s)	414
PaeR7I	CTCGAG	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	5 cut(s)	83, 115, 341, 406, 409
PleI	GAGTC	4 cut(s)	41, 46, 162, 418
PpsI	GAGTC	4 cut(s)	41, 46, 162, 418
PspN4I	GGNNCC	3 cut(s)	117, 255, 331
PspPI	GGNCC	2 cut(s)	115, 278
PspXI	VCTCGAGB	1 cut(s)	258
PsuI	RGATCY	3 cut(s)	253, 266, 314
RsaI	GTAC	4 cut(s)	218, 349, 358, 382
RsaNI	GTAC	4 cut(s)	217, 348, 357, 381
SatI	GCNGC	5 cut(s)	82, 114, 340, 405, 408
Sau3AI	GATC	4 cut(s)	238, 253, 266, 314
Sau96I	GGNCC	2 cut(s)	115, 278
SchI	GAGTC	4 cut(s)	42, 46, 163, 418
ScrFI	CCNGG	1 cut(s)	297
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	6 cut(s)	86, 128, 197, 212, 309, 394
SfaNI	GCATC	1 cut(s)	150
Sfr274I	CTCGAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
SsiI	CCGC	4 cut(s)	113, 186, 340, 366
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	180
TaiI	ACGT	1 cut(s)	197
TaqI	TCGA	4 cut(s)	122, 147, 259, 418
TaqII	GACCGA	1 cut(s)	87
TatI	WGTACW	3 cut(s)	347, 356, 380
TauI	GCSGC	2 cut(s)	116, 342
TfiI	GAWTC	1 cut(s)	104
TscAI	CASTG	2 cut(s)	95, 280
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	81, 404, 407
Tsp45I	GTSAC	1 cut(s)	155
TspRI	CASTG	2 cut(s)	95, 280
VpaK11BI	GGWCC	1 cut(s)	278
XceI	RCATGY	1 cut(s)	414
XhoI	CTCGAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.