Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Reverse (-)

27531563 .. 27535941

Gene Structure 4379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG253500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGACTAAAATGCTCGAATTTCATCACAATTTACAGACATTGCCACTGACCCAATTTCCACCATCCAAAAATAGAAAACCCAAAACCCCATCCATGTCAGTTGCGTTTTTTCTCTACTACCACCGTGTCAAGCACCAATCGGAGACTCAGAAACTTGTGAATGGCGGAGGAAGCAGCTCTCAGTGGTTCGCCAACAATTCCAGAGCGACGCCTTCGAGATTCCTCTATATTGGCACCGTCGAGCAGAGCCACAACTCCACAAGTAGGGACGCCATGGGCGGAGCAACGCCGAAAGTGAATCGGTCACCGTACCGGAAACTCAACAGATTGGATCGCTGGAGTTGGGATCCTCGAGTCGGATCTCGCAGTGGTCCTTGCAGGAGACGACCTGAAGGTGACCAGATCTTGTCGGACTGGAGCCACTCGCCGCACTTGTACCCTCTGGACATCGACCGCAGCGGAATTTTGTACACTGCAACCTCGCGCACCACCAGCAGCTTGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

168

Amino Acids

19.18

Weight (kDa)

10.36

Isoelectric Point (pI)

66.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	233
AccII	CGCG	1 cut(s)	484
AciI	CCGC	5 cut(s)	165, 279, 428, 454, 459
AclWI	GGATC	4 cut(s)	339, 341, 354, 367
AcsI	RAATTY	2 cut(s)	17, 462
AcuI	CTGAAG	1 cut(s)	411
AcyI	GRCGYC	2 cut(s)	209, 270
AfaI	GTAC	3 cut(s)	311, 437, 470
AfiI	CCNNNNNNNGG	2 cut(s)	264, 356
AluBI	AGCT	2 cut(s)	177, 498
AluI	AGCT	2 cut(s)	177, 498
Alw26I	GTCTC	2 cut(s)	137, 376
AlwI	GGATC	4 cut(s)	339, 341, 354, 367
Ama87I	CYCGRG	1 cut(s)	351
ApeKI	GCWGC	3 cut(s)	174, 456, 495
ApoI	RAATTY	2 cut(s)	17, 462
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	297, 407
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	371
BamHI	GGATCC	1 cut(s)	346
BanI	GGYRCC	1 cut(s)	233
BbvI	GCAGC	2 cut(s)	186, 468
BccI	CCATC	2 cut(s)	70, 97
BcoDI	GTCTC	2 cut(s)	137, 376
BfaI	CTAG	1 cut(s)	505
BglII	AGATCT	1 cut(s)	402
BisI	GCNGC	4 cut(s)	175, 428, 457, 496
BlsI	GCNGC	4 cut(s)	176, 429, 458, 497
Bme18I	GGWCC	1 cut(s)	371
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	3 cut(s)	235, 348, 419
BpmI	CTGGAG	2 cut(s)	358, 436
BsaHI	GRCGYC	2 cut(s)	209, 270
BsaJI	CCNNGG	1 cut(s)	273
BsaWI	WCCGGW	1 cut(s)	312
Bsc4I	CCNNNNNNNGG	2 cut(s)	264, 356
Bse1I	ACTGG	1 cut(s)	419
Bse3DI	GCAATG	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	2 cut(s)	62, 89
BseLI	CCNNNNNNNGG	2 cut(s)	264, 356
BseMI	GCAATG	1 cut(s)	38
BseMII	CTCAG	2 cut(s)	161, 194
BseNI	ACTGG	1 cut(s)	419
BseXI	GCAGC	2 cut(s)	186, 468
Bsh1236I	CGCG	1 cut(s)	484
Bsh1285I	CGRYCG	1 cut(s)	454
BshNI	GGYRCC	1 cut(s)	233
BsiEI	CGRYCG	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	313
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	264, 356
BsmAI	GTCTC	2 cut(s)	137, 376
BsmBI	CGTCTC	1 cut(s)	376
BsmFI	GGGAC	1 cut(s)	281
BsoBI	CYCGRG	1 cut(s)	351
Bsp1407I	TGTACA	1 cut(s)	468
Bsp143I	GATC	4 cut(s)	331, 346, 359, 402
Bsp19I	CCATGG	1 cut(s)	273
BspACI	CCGC	5 cut(s)	165, 279, 428, 454, 459
BspCNI	CTCAG	2 cut(s)	160, 193
BspFNI	CGCG	1 cut(s)	484
BspLI	GGNNCC	3 cut(s)	235, 348, 419
BspPI	GGATC	4 cut(s)	339, 341, 354, 367
BspT107I	GGYRCC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	38
BsrGI	TGTACA	1 cut(s)	468
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	331, 346, 359, 402
BssNI	GRCGYC	2 cut(s)	209, 270
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	125, 238, 309
BstACI	GRCGYC	2 cut(s)	209, 270
BstAPI	GCANNNNNTGC	1 cut(s)	501
BstAUI	TGTACA	1 cut(s)	468
BstDEI	CTNAG	2 cut(s)	147, 180
BstDSI	CCRYGG	1 cut(s)	273
BstEII	GGTNACC	2 cut(s)	303, 395
BstF5I	GGATG	2 cut(s)	62, 89
BstFNI	CGCG	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	4 cut(s)	334, 349, 362, 405
BstMAI	GTCTC	2 cut(s)	137, 376
BstMBI	GATC	4 cut(s)	331, 346, 359, 402
BstMCI	CGRYCG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	3 cut(s)	171, 492, 501
BstPI	GGTNACC	2 cut(s)	303, 395
BstUI	CGCG	1 cut(s)	484
BstV1I	GCAGC	2 cut(s)	186, 468
BstX2I	RGATCY	3 cut(s)	346, 359, 402
BstYI	RGATCY	3 cut(s)	346, 359, 402
BtgI	CCRYGG	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	62, 89
BtsI	GCAGTG	2 cut(s)	373, 471
BtsIMutI	CAGTG	4 cut(s)	44, 188, 373, 471
CfoI	GCGC	1 cut(s)	486
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	2 cut(s)	217, 278
Csp6I	GTAC	3 cut(s)	310, 436, 469
CviAII	CATG	2 cut(s)	94, 274
CviJI	RGCY	4 cut(s)	177, 249, 420, 498
CviKI_1	RGCY	4 cut(s)	177, 249, 420, 498
CviQI	GTAC	3 cut(s)	310, 436, 469
DdeI	CTNAG	2 cut(s)	147, 180
DpnI	GATC	4 cut(s)	333, 348, 361, 404
DpnII	GATC	4 cut(s)	331, 346, 359, 402
EciI	GGCGGA	2 cut(s)	180, 294
Eco130I	CCWWGG	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	351
Eco91I	GGTNACC	2 cut(s)	303, 395
EcoO65I	GGTNACC	2 cut(s)	303, 395
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	2 cut(s)	97, 277
FaiI	YATR	3 cut(s)	95, 228, 275
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	2 cut(s)	93, 273
Fnu4HI	GCNGC	4 cut(s)	175, 428, 457, 496
FokI	GGATG	2 cut(s)	49, 76
Fsp4HI	GCNGC	4 cut(s)	175, 428, 457, 496
FspBI	CTAG	1 cut(s)	505
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	4 cut(s)	175, 428, 457, 496
GsuI	CTGGAG	2 cut(s)	358, 436
HapII	CCGG	1 cut(s)	313
HgaI	GACGC	2 cut(s)	217, 278
HhaI	GCGC	1 cut(s)	486
Hin1I	GRCGYC	2 cut(s)	209, 270
Hin1II	CATG	2 cut(s)	97, 277
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HinfI	GANTC	4 cut(s)	145, 219, 298, 354
HpaII	CCGG	1 cut(s)	313
HphI	GGTGA	2 cut(s)	297, 407
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	4 cut(s)	142, 150, 359, 412
Hpy188III	TCNNGA	3 cut(s)	201, 216, 443
Hpy8I	GTNNAC	1 cut(s)	471
Hpy99I	CGWCG	2 cut(s)	211, 242
HpyAV	CCTTC	2 cut(s)	222, 386
HpyCH4III	ACNGT	3 cut(s)	125, 238, 309
HpyCH4V	TGCA	2 cut(s)	378, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	171, 492, 501
HpyF3I	CTNAG	2 cut(s)	147, 180
Hsp92I	GRCGYC	2 cut(s)	209, 270
Hsp92II	CATG	2 cut(s)	97, 277
HspAI	GCGC	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	331, 346, 359, 402
LmnI	GCTCC	2 cut(s)	281, 417
LpnPI	CCDG	8 cut(s)	214, 322, 326, 364, 400, 402, 413, 428
Lsp1109I	GCAGC	2 cut(s)	186, 468
MaeI	CTAG	1 cut(s)	505
MaeIII	GTNAC	2 cut(s)	303, 395
MalI	GATC	4 cut(s)	333, 348, 361, 404
MboI	GATC	4 cut(s)	331, 346, 359, 402
MflI	RGATCY	3 cut(s)	346, 359, 402
MluCI	AATT	5 cut(s)	17, 28, 53, 196, 462
MlyI	GAGTC	2 cut(s)	139, 363
MmeI	TCCRAC	2 cut(s)	337, 390
MnlI	CCTC	5 cut(s)	161, 233, 360, 450, 490
MspA1I	CMGCKG	1 cut(s)	459
MspI	CCGG	1 cut(s)	313
MvnI	CGCG	1 cut(s)	484
MwoI	GCNNNNNNNGC	3 cut(s)	171, 492, 501
NcoI	CCATGG	1 cut(s)	273
NdeII	GATC	4 cut(s)	331, 346, 359, 402
NlaIII	CATG	2 cut(s)	97, 277
NlaIV	GGNNCC	3 cut(s)	235, 348, 419
NmuCI	GTSAC	2 cut(s)	303, 395
PaeR7I	CTCGAG	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	219, 298
PkrI	GCNGC	4 cut(s)	176, 429, 458, 497
PleI	GAGTC	2 cut(s)	139, 362
PpsI	GAGTC	2 cut(s)	139, 362
PspEI	GGTNACC	2 cut(s)	303, 395
PspN4I	GGNNCC	3 cut(s)	235, 348, 419
PspPI	GGNCC	1 cut(s)	371
PspXI	VCTCGAGB	1 cut(s)	351
PsuI	RGATCY	3 cut(s)	346, 359, 402
RsaI	GTAC	3 cut(s)	311, 437, 470
RsaNI	GTAC	3 cut(s)	310, 436, 469
SatI	GCNGC	4 cut(s)	175, 428, 457, 496
Sau3AI	GATC	4 cut(s)	331, 346, 359, 402
Sau96I	GGNCC	1 cut(s)	371
SchI	GAGTC	2 cut(s)	139, 363
SetI	ASST	5 cut(s)	179, 391, 397, 482, 500
Sfr274I	CTCGAG	1 cut(s)	351
SinI	GGWCC	1 cut(s)	371
SlaI	CTCGAG	1 cut(s)	351
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
Sse9I	AATT	5 cut(s)	17, 28, 53, 196, 462
SsiI	CCGC	5 cut(s)	165, 279, 428, 454, 459
SspMI	CTAG	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	3 cut(s)	125, 238, 309
TaqI	TCGA	5 cut(s)	15, 215, 240, 352, 450
TaqII	GACCGA	1 cut(s)	291
TasI	AATT	5 cut(s)	17, 28, 53, 196, 462
TatI	WGTACW	1 cut(s)	468
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	2 cut(s)	219, 298
TscAI	CASTG	4 cut(s)	51, 188, 373, 478
TseFI	GTSAC	2 cut(s)	303, 395
TseI	GCWGC	3 cut(s)	174, 456, 495
Tsp45I	GTSAC	2 cut(s)	303, 395
TspDTI	ATGAA	1 cut(s)	11
TspRI	CASTG	4 cut(s)	51, 188, 373, 478
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	2 cut(s)	17, 462
XhoI	CTCGAG	1 cut(s)	351
XspI	CTAG	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.