Rh3DG231400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000565
Physical Location & Seq
Forward (+)
21989557 .. 21990964
1408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG231400.1

Sequence Viewer

Length: 396 bp
ATGCGTACTAGCGTGGCTTTGATTCATGAGTCGTCGGCCCAGATTGCAGGATCAGTGATGCTAATCAATGGAATCTTGGGTCAGCTGCAGATCCATCAAATTTGGGTTCAGATGCAAGCTATTAATGTAGCGGTTAGGGCCATTGAAGATCTGCTAATGGGGCTCCACCGTGGTTGCCTGGTTATAGTTGCGGCCCAAGTCGATGGCAGTGCTCACTCCCAAATTCAAGTCGGATTGGCTGATTTGGACTATGCATTGGGTAGGTTTCTAGCGGCGAATAATAAACTTCTTGCTAATCTCCCCAGTTTGGTCTGGCCAGCAATTTGCTCCTCTTCTCCCTCCACTGCCATTGTCACCCTCCGTCCAACAACGAGTGTTAACTCACCCACCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

13.86

Weight (kDa)

7.89

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 131, 191, 272
AclWI GGATC 2 cut(s) 58, 85
AcoI YGGCCR 1 cut(s) 314
AcsI RAATTY 2 cut(s) 99, 222
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 2 cut(s) 146, 227
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 2 cut(s) 85, 119
AluI AGCT 2 cut(s) 85, 119
Alw21I GWGCWC 1 cut(s) 214
AlwI GGATC 2 cut(s) 58, 85
AoxI GGCC 4 cut(s) 36, 138, 192, 314
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 2 cut(s) 99, 222
AseI ATTAAT 1 cut(s) 123
AspS9I GGNCC 3 cut(s) 37, 138, 193
AsuHPI GGTGA 2 cut(s) 346, 375
BalI TGGCCA 1 cut(s) 316
BanII GRGCYC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 72
BccI CCATC 2 cut(s) 102, 197
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BciT130I CCWGG 1 cut(s) 179
BfaI CTAG 2 cut(s) 9, 269
BfmI CTRYAG 1 cut(s) 86
BglII AGATCT 1 cut(s) 148
BisI GCNGC 3 cut(s) 86, 192, 273
BlsI GCNGC 3 cut(s) 87, 193, 274
Bme1390I CCNGG 1 cut(s) 179
BmgT120I GGNCC 3 cut(s) 37, 138, 193
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 179
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 2 cut(s) 48, 102
BmuI ACTGGG 1 cut(s) 297
BsaBI GATNNNNATC 1 cut(s) 62
BsaJI CCNNGG 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 1 cut(s) 303
Bse8I GATNNNNATC 1 cut(s) 62
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 62
BseLI CCNNNNNNNGG 1 cut(s) 307
BseNI ACTGG 1 cut(s) 303
BseRI GAGGAG 1 cut(s) 319
BseXI GCAGC 1 cut(s) 72
BshFI GGCC 4 cut(s) 38, 140, 194, 316
BsiHKAI GWGCWC 1 cut(s) 214
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 4 cut(s) 38, 140, 194, 316
Bsp1286I GDGCHC 2 cut(s) 165, 214
Bsp143I GATC 3 cut(s) 50, 90, 148
BspACI CCGC 3 cut(s) 131, 191, 272
BspANI GGCC 4 cut(s) 38, 140, 194, 316
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 164
BspMAI CTGCAG 1 cut(s) 90
BspPI GGATC 2 cut(s) 58, 85
BsrI ACTGG 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 3 cut(s) 50, 90, 148
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 337
BstC8I GCNNGC 2 cut(s) 117, 318
BstDSI CCRYGG 1 cut(s) 169
BstKTI GATC 3 cut(s) 53, 93, 151
BstMBI GATC 3 cut(s) 50, 90, 148
BstMWI GCNNNNNNNGC 3 cut(s) 44, 137, 160
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 1 cut(s) 86
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 2 cut(s) 90, 148
BstXI CCANNNNNNTGG 1 cut(s) 203
BstYI RGATCY 2 cut(s) 90, 148
BsuRI GGCC 4 cut(s) 38, 140, 194, 316
BtgI CCRYGG 1 cut(s) 169
BtsI GCAGTG 2 cut(s) 214, 342
BtsIMutI CAGTG 3 cut(s) 60, 214, 342
Cac8I GCNNGC 2 cut(s) 117, 318
CciI TCATGA 1 cut(s) 25
Cfr13I GGNCC 3 cut(s) 37, 138, 193
Csp6I GTAC 1 cut(s) 6
CspCI CAANNNNNGTGG 4 cut(s) 155, 190, 331, 366
CviAII CATG 1 cut(s) 26
CviJI RGCY 9 cut(s) 17, 38, 85, 119, 140, 163, 194, 239, 316
CviKI_1 RGCY 9 cut(s) 17, 38, 85, 119, 140, 163, 194, 239, 316
CviQI GTAC 1 cut(s) 6
DpnI GATC 3 cut(s) 52, 92, 150
DpnII GATC 3 cut(s) 50, 90, 148
EaeI YGGCCR 1 cut(s) 314
Eam1104I CTCTTC 1 cut(s) 337
EarI CTCTTC 1 cut(s) 337
Eco24I GRGCYC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 177
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 1 cut(s) 29
FaiI YATR 3 cut(s) 27, 185, 252
FatI CATG 1 cut(s) 25
Fnu4HI GCNGC 3 cut(s) 86, 192, 273
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 3 cut(s) 86, 192, 273
FspBI CTAG 2 cut(s) 9, 269
GluI GCNGC 3 cut(s) 86, 192, 273
HaeIII GGCC 4 cut(s) 38, 140, 194, 316
Hin1II CATG 1 cut(s) 29
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 3 cut(s) 22, 29, 72
HpaI GTTAAC 1 cut(s) 379
HphI GGTGA 2 cut(s) 346, 375
Hpy166II GTNNAC 1 cut(s) 379
Hpy188I TCNGA 2 cut(s) 111, 233
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 1 cut(s) 379
Hpy99I CGWCG 1 cut(s) 37
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 4 cut(s) 47, 88, 115, 254
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 137, 160
Hsp92II CATG 1 cut(s) 29
KspAI GTTAAC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 50, 90, 148
LmnI GCTCC 2 cut(s) 168, 332
LpnPI CCDG 7 cut(s) 33, 53, 164, 191, 298, 316, 330
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 2 cut(s) 48, 102
MaeI CTAG 2 cut(s) 9, 269
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 52, 92, 150
MboI GATC 3 cut(s) 50, 90, 148
MboII GAAGA 2 cut(s) 158, 324
MflI RGATCY 2 cut(s) 90, 148
MhlI GDGCHC 2 cut(s) 165, 214
MlsI TGGCCA 1 cut(s) 316
MluCI AATT 3 cut(s) 99, 222, 321
MluNI TGGCCA 1 cut(s) 316
MlyI GAGTC 1 cut(s) 38
MmeI TCCRAC 2 cut(s) 211, 389
MnlI CCTC 3 cut(s) 340, 349, 368
Mox20I TGGCCA 1 cut(s) 316
Mph1103I ATGCAT 1 cut(s) 256
MscI TGGCCA 1 cut(s) 316
MseI TTAA 2 cut(s) 123, 378
Msp20I TGGCCA 1 cut(s) 316
MspA1I CMGCKG 1 cut(s) 85
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 3 cut(s) 44, 137, 160
NdeII GATC 3 cut(s) 50, 90, 148
NlaIII CATG 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 352
NsiI ATGCAT 1 cut(s) 256
PagI TCATGA 1 cut(s) 25
PfeI GAWTC 2 cut(s) 22, 72
PkrI GCNGC 3 cut(s) 87, 193, 274
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 3 cut(s) 37, 138, 193
PstI CTGCAG 1 cut(s) 90
PsuI RGATCY 2 cut(s) 90, 148
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 123, 378
SatI GCNGC 3 cut(s) 86, 192, 273
Sau3AI GATC 3 cut(s) 50, 90, 148
Sau96I GGNCC 3 cut(s) 37, 138, 193
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 2 cut(s) 165, 214
SetI ASST 3 cut(s) 87, 121, 266
SfaNI GCATC 2 cut(s) 48, 102
SfcI CTRYAG 1 cut(s) 86
Sse9I AATT 3 cut(s) 99, 222, 321
SsiI CCGC 3 cut(s) 131, 191, 272
SspMI CTAG 2 cut(s) 9, 269
StyD4I CCNGG 1 cut(s) 177
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 201
TasI AATT 3 cut(s) 99, 222, 321
TauI GCSGC 2 cut(s) 194, 275
TfiI GAWTC 2 cut(s) 22, 72
Tru1I TTAA 2 cut(s) 123, 378
Tru9I TTAA 2 cut(s) 123, 378
TscAI CASTG 3 cut(s) 60, 214, 349
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 14
TspGWI ACGGA 1 cut(s) 350
TspRI CASTG 3 cut(s) 60, 214, 349
VspI ATTAAT 1 cut(s) 123
XapI RAATTY 2 cut(s) 99, 222
XspI CTAG 2 cut(s) 9, 269
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.