RchiOBHm_Chr4g0432031

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
56178221 .. 56182854
4634 bp
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UTR
Exon/CDS
Intron
PRQ40067

Sequence Viewer

Length: 561 bp
ATGCTTTTGCTGTTCACTCTCTTCCCGTTGCTGTTGCTGCTCTCCGGTTTTATTGTTCACTCTGCATGCATCGATTGGCTCTTCTTTACCTATTTGGGAGTGAGGGCTGCGATGTTTGTTAGAGATGCTAAGGCTCTTTGTCCACACCTTGTCATTCTTCCTTATGATTTTGAAGCGTATGAGGAGGTAACTAATCGGTTCTATGACATTCTGCATAAGCACTGCAGAAAAGTACAAGCAGTAAGCTGTGACGAAGCATTTTTAGATGTCACATACTTGGAAGGGGTAGATATGGATATGTTGGCCTCAATTATAATACAAGAGATCTTTGAGACTACTGGATGCATTGCAAGTGCTGGTATAGCTAGAAATATGCTCATGGCTCGCCTTACAACAAGAACTGCTAAACCAGACGGTCAATGCAACATTCCTCCCAAAAGGTGCAATATGCAAGAAGGGATGGTGGGAAATCCTGTTGCTAAAACCATGAAGACTGTTTCAAGAGGCATGGCTGTTCTTACAGTTCCGTTTACCATGGAATTTCCAAAGAGTGTAGGCTGA

Protein Analysis

186

Amino Acids

20.83

Weight (kDa)

6.41

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMS PF00817 32 - 132 2.8e-25 impB/mucB/samB family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 314
AcsI RAATTY 1 cut(s) 539
AfaI GTAC 1 cut(s) 234
AgsI TTSAA 2 cut(s) 173, 501
AluBI AGCT 2 cut(s) 246, 365
AluI AGCT 2 cut(s) 246, 365
Alw26I GTCTC 1 cut(s) 326
AoxI GGCC 1 cut(s) 303
ApeKI GCWGC 2 cut(s) 37, 107
ApoI RAATTY 1 cut(s) 539
BbsI GAAGAC 1 cut(s) 497
BbvI GCAGC 2 cut(s) 24, 94
BccI CCATC 1 cut(s) 454
BcoDI GTCTC 1 cut(s) 326
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 223
BglII AGATCT 1 cut(s) 324
BisI GCNGC 2 cut(s) 38, 108
BlsI GCNGC 2 cut(s) 39, 109
BmsI GCATC 3 cut(s) 78, 115, 332
BpiI GAAGAC 1 cut(s) 497
Bpu10I CCTNAGC 1 cut(s) 129
Bsa29I ATCGAT 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 534
BsaWI WCCGGW 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 343
Bse3DI GCAATG 1 cut(s) 345
BseCI ATCGAT 1 cut(s) 72
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 2 cut(s) 347, 465
BseMI GCAATG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 24, 94
BshFI GGCC 1 cut(s) 305
BshVI ATCGAT 1 cut(s) 72
BsiSI CCGG 1 cut(s) 45
BsmAI GTCTC 1 cut(s) 326
BsnI GGCC 1 cut(s) 305
Bsp143I GATC 1 cut(s) 324
Bsp19I CCATGG 1 cut(s) 534
BspANI GGCC 1 cut(s) 305
BspDI ATCGAT 1 cut(s) 72
BspMAI CTGCAG 1 cut(s) 227
BspQI GCTCTTC 1 cut(s) 86
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 1 cut(s) 324
BssT1I CCWWGG 1 cut(s) 534
Bst4CI ACNGT 3 cut(s) 416, 496, 523
Bst6I CTCTTC 2 cut(s) 26, 86
BstC8I GCNNGC 2 cut(s) 67, 385
BstDEI CTNAG 1 cut(s) 129
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 2 cut(s) 347, 465
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 2 cut(s) 37, 362
BstNSI RCATGY 1 cut(s) 69
BstSFI CTRYAG 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 24, 94
BstV2I GAAGAC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
Bsu15I ATCGAT 1 cut(s) 72
BsuRI GGCC 1 cut(s) 305
BsuTUI ATCGAT 1 cut(s) 72
BtgI CCRYGG 1 cut(s) 534
BtgZI GCGATG 1 cut(s) 125
BtsCI GGATG 2 cut(s) 347, 465
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 1 cut(s) 220
Cac8I GCNNGC 2 cut(s) 67, 385
ClaI ATCGAT 1 cut(s) 72
Csp6I GTAC 1 cut(s) 233
CviAII CATG 5 cut(s) 66, 379, 487, 508, 535
CviJI RGCY 9 cut(s) 79, 107, 134, 246, 305, 365, 383, 512, 558
CviKI_1 RGCY 9 cut(s) 79, 107, 134, 246, 305, 365, 383, 512, 558
CviQI GTAC 1 cut(s) 233
DdeI CTNAG 1 cut(s) 129
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eam1104I CTCTTC 2 cut(s) 26, 86
EarI CTCTTC 2 cut(s) 26, 86
Eco130I CCWWGG 1 cut(s) 534
EcoT14I CCWWGG 1 cut(s) 534
EcoT22I ATGCAT 2 cut(s) 71, 347
ErhI CCWWGG 1 cut(s) 534
FaeI CATG 5 cut(s) 69, 382, 490, 511, 538
FatI CATG 5 cut(s) 65, 378, 486, 507, 534
Fnu4HI GCNGC 2 cut(s) 38, 108
FokI GGATG 2 cut(s) 354, 472
Fsp4HI GCNGC 2 cut(s) 38, 108
FspBI CTAG 1 cut(s) 366
GluI GCNGC 2 cut(s) 38, 108
HaeIII GGCC 1 cut(s) 305
HapII CCGG 1 cut(s) 45
Hin1II CATG 5 cut(s) 69, 382, 490, 511, 538
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 4 cut(s) 15, 58, 143, 531
Hpy188III TCNNGA 1 cut(s) 501
Hpy8I GTNNAC 4 cut(s) 15, 58, 143, 531
HpyAV CCTTC 2 cut(s) 275, 449
HpyCH4III ACNGT 3 cut(s) 416, 496, 523
HpyCH4V TGCA 9 cut(s) 65, 69, 214, 225, 345, 350, 423, 444, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 362
HpyF3I CTNAG 1 cut(s) 129
Hsp92II CATG 5 cut(s) 69, 382, 490, 511, 538
Kzo9I GATC 1 cut(s) 324
LguI GCTCTTC 1 cut(s) 86
LpnPI CCDG 5 cut(s) 58, 324, 342, 423, 486
Lsp1109I GCAGC 2 cut(s) 24, 94
LweI GCATC 3 cut(s) 78, 115, 332
MaeI CTAG 1 cut(s) 366
MaeIII GTNAC 3 cut(s) 187, 248, 268
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 4 cut(s) 13, 73, 149, 502
MflI RGATCY 1 cut(s) 324
MluCI AATT 2 cut(s) 309, 539
MnlI CCTC 6 cut(s) 96, 175, 178, 316, 441, 497
Mph1103I ATGCAT 2 cut(s) 71, 347
MspI CCGG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 37, 362
NcoI CCATGG 1 cut(s) 534
NdeII GATC 1 cut(s) 324
NlaIII CATG 5 cut(s) 69, 382, 490, 511, 538
NmuCI GTSAC 2 cut(s) 248, 268
NsiI ATGCAT 2 cut(s) 71, 347
NspI RCATGY 1 cut(s) 69
PaeI GCATGC 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 86
PkrI GCNGC 2 cut(s) 39, 109
PsiI TTATAA 1 cut(s) 314
PstI CTGCAG 1 cut(s) 227
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 1 cut(s) 234
RsaNI GTAC 1 cut(s) 233
SapI GCTCTTC 1 cut(s) 86
SatI GCNGC 2 cut(s) 38, 108
Sau3AI GATC 1 cut(s) 324
SetI ASST 6 cut(s) 92, 150, 189, 248, 367, 443
SfaNI GCATC 3 cut(s) 78, 115, 332
SfcI CTRYAG 1 cut(s) 223
SphI GCATGC 1 cut(s) 69
Sse9I AATT 2 cut(s) 309, 539
SspMI CTAG 1 cut(s) 366
StyI CCWWGG 1 cut(s) 534
TaaI ACNGT 3 cut(s) 416, 496, 523
TaqI TCGA 1 cut(s) 72
TasI AATT 2 cut(s) 309, 539
TatI WGTACW 1 cut(s) 232
TscAI CASTG 1 cut(s) 227
TseFI GTSAC 2 cut(s) 248, 268
TseI GCWGC 2 cut(s) 37, 107
Tsp45I GTSAC 2 cut(s) 248, 268
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 516
TspRI CASTG 1 cut(s) 227
XapI RAATTY 1 cut(s) 539
XceI RCATGY 1 cut(s) 69
XspI CTAG 1 cut(s) 366
Zsp2I ATGCAT 2 cut(s) 71, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.