Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Forward (+)

29542027 .. 29544591

Gene Structure 2565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG157000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTTGATTCTGCATCTGCAACCGGAGAGCGTCTCTCTCGCCATTGCCGAACCGGCTCACAAGCAAATTCGAAAGTCCAGAGAGCTTCATCTACGCCTGAAGAGTTGAGATCTTATCAAGGACGATCGATTCAGCTCTTGCAGGATCCGAAGCACCATACAAATTCAAAGGGACCTGCTCAAGCTCAGAACTTAAGAGATTCTCTAGCTGAAGCAAAGTTGAATATTGTGGTCAAGATTGGGCTCAGGAAGGGATCCCGTTCATTTAATGAAGCTTGCGCAGCTGGTTTCACCGAGGAGAATGGGACTTTAGCTTACTATAGTTGTAAGTTCCCAGTGATAGTTCCCAATTCACTCTTTTCTAGTCAGGTGATTGTGAACAAGTCACGTGCTCAATGGCGTGGCATCATCACCAGAATTCCCCTGCAAATCAATGATGATTTGGATAAGGTTCCTCAGATATCAGATGATATAAAAAGCATGCTTAGATCTCACCCGAAGGTTTTCTTGGGAAAGGAGGTGCCTTATTGTTTCCTTTCTCATCTAGAGAGCTCATTTGGAGAATTGACTCTTGGATGTAACCTCAAACAGATGAGCAAGGACGAGTTATTCTCTACAGAAGAAGATATCCTTTTGCGGTCGGTCAAGATAATTAAGGGGCATGGCGCCAAGTTGGGCAGCACCTATGGTGATATGACCACTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008381 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015267 GO:0016020 GO:0019866 GO:0022803 GO:0022836 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MS_channel

Protein Analysis

235

Amino Acids

26.01

Weight (kDa)

9.19

Isoelectric Point (pI)

48.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	280
Acc36I	ACCTGC	1 cut(s)	184
AccB1I	GGYRCC	2 cut(s)	520, 665
AciI	CCGC	1 cut(s)	637
AclWI	GGATC	4 cut(s)	140, 153, 249, 262
AcsI	RAATTY	3 cut(s)	67, 163, 417
AcuI	CTGAAG	2 cut(s)	120, 231
AcvI	CACGTG	1 cut(s)	389
AcyI	GRCGYC	1 cut(s)	666
AflII	CTTAAG	1 cut(s)	193
AgsI	TTSAA	2 cut(s)	168, 223
AjuI	GAANNNNNNNTTGG	4 cut(s)	491, 523, 555, 587
AluBI	AGCT	8 cut(s)	86, 136, 185, 209, 275, 284, 314, 552
AluI	AGCT	8 cut(s)	86, 136, 185, 209, 275, 284, 314, 552
Alw21I	GWGCWC	2 cut(s)	394, 554
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	4 cut(s)	140, 153, 249, 262
ApeKI	GCWGC	2 cut(s)	281, 678
ApoI	RAATTY	3 cut(s)	67, 163, 417
Asp700I	GAANNNNTTC	1 cut(s)	503
AspLEI	GCGC	2 cut(s)	281, 668
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	5 cut(s)	283, 382, 403, 485, 701
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	1 cut(s)	173
BamHI	GGATCC	2 cut(s)	145, 254
BanI	GGYRCC	2 cut(s)	520, 665
BanII	GRGCYC	2 cut(s)	246, 554
BbrPI	CACGTG	1 cut(s)	389
Bbv12I	GWGCWC	2 cut(s)	394, 554
BbvI	GCAGC	2 cut(s)	293, 690
BcoDI	GTCTC	1 cut(s)	38
BfaI	CTAG	3 cut(s)	206, 363, 545
BfmI	CTRYAG	2 cut(s)	319, 615
BfoI	RGCGCY	1 cut(s)	669
BfrI	CTTAAG	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	184
BglI	GCCNNNNNGGC	1 cut(s)	54
BglII	AGATCT	2 cut(s)	110, 488
BisI	GCNGC	2 cut(s)	282, 679
BlsI	GCNGC	2 cut(s)	283, 680
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	6 cut(s)	147, 174, 256, 453, 522, 667
BmrI	ACTGGG	1 cut(s)	329
BmsI	GCATC	2 cut(s)	23, 414
BmuI	ACTGGG	1 cut(s)	329
BplI	GAGNNNNNCTC	6 cut(s)	18, 50, 20, 52, 596, 628
Bpu10I	CCTNAGC	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	165
Bsa29I	ATCGAT	1 cut(s)	128
BsaAI	YACGTR	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	666
BsaJI	CCNNGG	1 cut(s)	294
BsaWI	WCCGGW	1 cut(s)	23
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	43
BseCI	ATCGAT	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	1 cut(s)	581
BseMI	GCAATG	1 cut(s)	43
BseMII	CTCAG	3 cut(s)	200, 259, 470
BseNI	ACTGG	1 cut(s)	335
BseRI	GAGGAG	1 cut(s)	311
BseXI	GCAGC	2 cut(s)	293, 690
Bsh1285I	CGRYCG	2 cut(s)	128, 641
BshNI	GGYRCC	2 cut(s)	520, 665
BshVI	ATCGAT	1 cut(s)	128
BsiEI	CGRYCG	2 cut(s)	128, 641
BsiHKAI	GWGCWC	2 cut(s)	394, 554
BsiSI	CCGG	2 cut(s)	24, 54
BslFI	GGGAC	2 cut(s)	186, 319
BsmAI	GTCTC	1 cut(s)	38
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	2 cut(s)	186, 319
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	3 cut(s)	246, 394, 554
Bsp143I	GATC	5 cut(s)	110, 125, 145, 254, 488
BspACI	CCGC	1 cut(s)	637
BspCNI	CTCAG	3 cut(s)	199, 258, 469
BspDI	ATCGAT	1 cut(s)	128
BspLI	GGNNCC	6 cut(s)	147, 174, 256, 453, 522, 667
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	4 cut(s)	140, 153, 249, 262
BspT104I	TTCGAA	1 cut(s)	71
BspT107I	GGYRCC	2 cut(s)	520, 665
BspTI	CTTAAG	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	335
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	5 cut(s)	110, 125, 145, 254, 488
BssNI	GRCGYC	1 cut(s)	666
Bst6I	CTCTTC	1 cut(s)	96
BstACI	GRCGYC	1 cut(s)	666
BstAFI	CTTAAG	1 cut(s)	193
BstBAI	YACGTR	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	71
BstC8I	GCNNGC	2 cut(s)	277, 482
BstDEI	CTNAG	4 cut(s)	186, 245, 456, 485
BstF5I	GGATG	1 cut(s)	581
BstH2I	RGCGCY	1 cut(s)	669
BstHHI	GCGC	2 cut(s)	281, 668
BstKTI	GATC	5 cut(s)	113, 128, 148, 257, 491
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	5 cut(s)	110, 125, 145, 254, 488
BstMCI	CGRYCG	2 cut(s)	128, 641
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 281
BstNSI	RCATGY	1 cut(s)	484
BstSFI	CTRYAG	2 cut(s)	319, 615
BstV1I	GCAGC	2 cut(s)	293, 690
BstX2I	RGATCY	4 cut(s)	110, 145, 254, 488
BstYI	RGATCY	4 cut(s)	110, 145, 254, 488
Bsu15I	ATCGAT	1 cut(s)	128
BsuTUI	ATCGAT	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	581
BtsIMutI	CAGTG	1 cut(s)	342
BveI	ACCTGC	1 cut(s)	184
Cac8I	GCNNGC	2 cut(s)	277, 482
CfoI	GCGC	2 cut(s)	281, 668
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	128
CseI	GACGC	1 cut(s)	20
CviAII	CATG	2 cut(s)	481, 662
DdeI	CTNAG	4 cut(s)	186, 245, 456, 485
DinI	GGCGCC	1 cut(s)	667
DpnI	GATC	5 cut(s)	112, 127, 147, 256, 490
DpnII	GATC	5 cut(s)	110, 125, 145, 254, 488
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	552
Eco24I	GRGCYC	2 cut(s)	246, 554
Eco32I	GATATC	2 cut(s)	462, 628
Eco47I	GGWCC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	552
Eco57I	CTGAAG	2 cut(s)	120, 231
Eco72I	CACGTG	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	417
EcoRV	GATATC	2 cut(s)	462, 628
EcoT38I	GRGCYC	2 cut(s)	246, 554
EgeI	GGCGCC	1 cut(s)	667
EheI	GGCGCC	1 cut(s)	667
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	2 cut(s)	484, 665
FaiI	YATR	8 cut(s)	159, 321, 473, 482, 663, 687, 695, 706
FalI	AAGNNNNNCTT	4 cut(s)	491, 523, 615, 647
FaqI	GGGAC	2 cut(s)	186, 319
FatI	CATG	2 cut(s)	480, 661
Fnu4HI	GCNGC	2 cut(s)	282, 679
FokI	GGATG	1 cut(s)	588
FriOI	GRGCYC	2 cut(s)	246, 554
Fsp4HI	GCNGC	2 cut(s)	282, 679
FspBI	CTAG	3 cut(s)	206, 363, 545
FspI	TGCGCA	1 cut(s)	280
GlaI	GCGC	2 cut(s)	280, 667
GluI	GCNGC	2 cut(s)	282, 679
HaeII	RGCGCY	1 cut(s)	669
HapII	CCGG	2 cut(s)	24, 54
HgaI	GACGC	1 cut(s)	20
HhaI	GCGC	2 cut(s)	281, 668
Hin1I	GRCGYC	1 cut(s)	666
Hin1II	CATG	2 cut(s)	484, 665
Hin6I	GCGC	2 cut(s)	279, 666
HinP1I	GCGC	2 cut(s)	279, 666
HindIII	AAGCTT	1 cut(s)	273
HinfI	GANTC	4 cut(s)	8, 130, 200, 568
HpaII	CCGG	2 cut(s)	24, 54
HphI	GGTGA	5 cut(s)	283, 382, 403, 485, 701
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188I	TCNGA	4 cut(s)	150, 189, 459, 466
Hpy188III	TCNNGA	5 cut(s)	79, 235, 247, 545, 646
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	2 cut(s)	244, 493
HpyCH4IV	ACGT	1 cut(s)	388
HpyCH4V	TGCA	4 cut(s)	14, 20, 142, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 281
HpyF3I	CTNAG	4 cut(s)	186, 245, 456, 485
HpySE526I	ACGT	1 cut(s)	388
Hsp92I	GRCGYC	1 cut(s)	666
Hsp92II	CATG	2 cut(s)	484, 665
HspAI	GCGC	2 cut(s)	279, 666
KasI	GGCGCC	1 cut(s)	665
Kzo9I	GATC	5 cut(s)	110, 125, 145, 254, 488
Lsp1109I	GCAGC	2 cut(s)	293, 690
LweI	GCATC	2 cut(s)	23, 414
MaeI	CTAG	3 cut(s)	206, 363, 545
MaeII	ACGT	1 cut(s)	388
MaeIII	GTNAC	2 cut(s)	384, 578
MalI	GATC	5 cut(s)	112, 127, 147, 256, 490
MboI	GATC	5 cut(s)	110, 125, 145, 254, 488
MboII	GAAGA	3 cut(s)	113, 632, 635
MflI	RGATCY	4 cut(s)	110, 145, 254, 488
MhlI	GDGCHC	3 cut(s)	246, 394, 554
MluCI	AATT	6 cut(s)	67, 163, 349, 417, 563, 651
Mly113I	GGCGCC	1 cut(s)	666
MlyI	GAGTC	1 cut(s)	562
MnlI	CCTC	4 cut(s)	289, 465, 511, 593
MroXI	GAANNNNTTC	1 cut(s)	503
MseI	TTAA	3 cut(s)	194, 267, 654
MspA1I	CMGCKG	1 cut(s)	284
MspCI	CTTAAG	1 cut(s)	193
MspI	CCGG	2 cut(s)	24, 54
MwoI	GCNNNNNNNGC	2 cut(s)	54, 281
NarI	GGCGCC	1 cut(s)	666
NdeII	GATC	5 cut(s)	110, 125, 145, 254, 488
NlaIII	CATG	2 cut(s)	484, 665
NlaIV	GGNNCC	6 cut(s)	147, 174, 256, 453, 522, 667
NmuCI	GTSAC	1 cut(s)	384
NsbI	TGCGCA	1 cut(s)	280
NspI	RCATGY	1 cut(s)	484
NspV	TTCGAA	1 cut(s)	71
PaeI	GCATGC	1 cut(s)	484
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PdmI	GAANNNNTTC	1 cut(s)	503
PfeI	GAWTC	3 cut(s)	8, 130, 200
PkrI	GCNGC	2 cut(s)	283, 680
Ple19I	CGATCG	1 cut(s)	128
PleI	GAGTC	1 cut(s)	562
PluTI	GGCGCC	1 cut(s)	669
PmaCI	CACGTG	1 cut(s)	389
PmlI	CACGTG	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	562
Ppu21I	YACGTR	1 cut(s)	389
PpuMI	RGGWCCY	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	173
PspCI	CACGTG	1 cut(s)	389
PspN4I	GGNNCC	6 cut(s)	147, 174, 256, 453, 522, 667
PspPI	GGNCC	1 cut(s)	173
PspPPI	RGGWCCY	1 cut(s)	173
PsuI	RGATCY	4 cut(s)	110, 145, 254, 488
PvuI	CGATCG	1 cut(s)	128
PvuII	CAGCTG	1 cut(s)	284
SacI	GAGCTC	1 cut(s)	554
SaqAI	TTAA	3 cut(s)	194, 267, 654
SatI	GCNGC	2 cut(s)	282, 679
Sau3AI	GATC	5 cut(s)	110, 125, 145, 254, 488
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	562
SduI	GDGCHC	3 cut(s)	246, 394, 554
SfaNI	GCATC	2 cut(s)	23, 414
SfcI	CTRYAG	2 cut(s)	319, 615
SfoI	GGCGCC	1 cut(s)	667
SfuI	TTCGAA	1 cut(s)	71
SinI	GGWCC	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	180, 193
SmoI	CTYRAG	2 cut(s)	180, 193
SphI	GCATGC	1 cut(s)	484
Sse9I	AATT	6 cut(s)	67, 163, 349, 417, 563, 651
SsiI	CCGC	1 cut(s)	637
SspDI	GGCGCC	1 cut(s)	665
SspI	AATATT	1 cut(s)	226
SspMI	CTAG	3 cut(s)	206, 363, 545
SstI	GAGCTC	1 cut(s)	554
TaiI	ACGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	71, 128
TaqII	GACCGA	1 cut(s)	631
TasI	AATT	6 cut(s)	67, 163, 349, 417, 563, 651
TfiI	GAWTC	3 cut(s)	8, 130, 200
Tru1I	TTAA	3 cut(s)	194, 267, 654
Tru9I	TTAA	3 cut(s)	194, 267, 654
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	2 cut(s)	281, 678
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	3 cut(s)	78, 252, 285
TspRI	CASTG	1 cut(s)	342
Vha464I	CTTAAG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	3 cut(s)	67, 163, 417
XbaI	TCTAGA	1 cut(s)	544
XceI	RCATGY	1 cut(s)	484
XmnI	GAANNNNTTC	1 cut(s)	503
XspI	CTAG	3 cut(s)	206, 363, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.