Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Reverse (-)

46204529 .. 46206038

Gene Structure 1510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019091

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAGCGGAGAGACGCAGGAAGTGAACCGGTCGCCGTATCGGAAACTCAACTCGATCAAGAGATCGGATAGATATAGGCCGAGTCCCGAGTTTGCAGCCACTTCCGCCAATCGCAAAGCCGCCGCAGCCTCAAAACCCGATTCGCCGTCGCCGATGACACTATTCGTATATGGAACAGGCAGTCGCGCACACTTGTATTTCAGTTTTGACAGGCCACAATCATTATGTATCTGTGCCTCATTCCATCCTAAAGAAGACCTTGTTGTATCTACCTCCTTGGATCAAACTGTCCGTGTTTGGGATATTGGTTCTCTGAAAAAGAAGTTTGGGTCTCTTGCGGATGAAGTACTGTTACTAAGTCAGATAAGCACAGATCTTCTTGGTGGTGTTGTTGCTGTTGTTAAGTATGTCTTGGAAGGGCATGACCGAGGTGTCAATTGGGCTTCATTCCACCCCAACCTGCTTCTCATTGTCTCAAAAGCAGATGATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

165

Amino Acids

18.05

Weight (kDa)

8.79

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	73 - 104	4.7e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	431
Acc36I	ACCTGC	1 cut(s)	468
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	1 cut(s)	186
AciI	CCGC	5 cut(s)	6, 105, 120, 123, 338
AclWI	GGATC	1 cut(s)	288
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	1 cut(s)	298
AgeI	ACCGGT	1 cut(s)	27
Alw26I	GTCTC	3 cut(s)	5, 336, 478
AlwI	GGATC	1 cut(s)	288
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	77, 212
ApeKI	GCWGC	2 cut(s)	95, 125
AsiGI	ACCGGT	1 cut(s)	27
AspLEI	GCGC	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	86
BarI	GAAGNNNNNNTAC	2 cut(s)	336, 368
BbsI	GAAGAC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	107, 137
BccI	CCATC	1 cut(s)	252
BceAI	ACGGC	2 cut(s)	19, 130
BcoDI	GTCTC	3 cut(s)	5, 336, 478
BfuAI	ACCTGC	1 cut(s)	468
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	4 cut(s)	96, 120, 123, 126
BlsI	GCNGC	4 cut(s)	97, 121, 124, 127
BmcAI	AGTACT	1 cut(s)	348
BmeT110I	CYCGRG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	2 cut(s)	276, 427
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	276, 427
BseGI	GGATG	2 cut(s)	244, 346
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	107, 137
Bsh1236I	CGCG	1 cut(s)	186
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	79, 214
BshTI	ACCGGT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	1 cut(s)	28
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	3 cut(s)	5, 336, 478
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	79, 214
Bso31I	GGTCTC	1 cut(s)	336
BsoBI	CYCGRG	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	54, 62, 280, 373
BspACI	CCGC	5 cut(s)	6, 105, 120, 123, 338
BspANI	GGCC	2 cut(s)	79, 214
BspFNI	CGCG	1 cut(s)	186
BspMI	ACCTGC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	288
BspTNI	GGTCTC	1 cut(s)	336
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	276, 427
BssMI	GATC	4 cut(s)	54, 62, 280, 373
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	289, 351
BstDEI	CTNAG	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	244, 346
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	4 cut(s)	57, 65, 283, 376
BstMAI	GTCTC	3 cut(s)	5, 336, 478
BstMBI	GATC	4 cut(s)	54, 62, 280, 373
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 125
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	107, 137
BstV2I	GAAGAC	1 cut(s)	261
BstX2I	RGATCY	1 cut(s)	373
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	2 cut(s)	79, 214
BtsCI	GGATG	2 cut(s)	244, 346
BveI	ACCTGC	1 cut(s)	468
CfoI	GCGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	27
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	347
CspAI	ACCGGT	1 cut(s)	27
CviAII	CATG	1 cut(s)	422
CviJI	RGCY	6 cut(s)	79, 98, 119, 128, 214, 443
CviKI_1	RGCY	6 cut(s)	79, 98, 119, 128, 214, 443
CviQI	GTAC	1 cut(s)	347
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	4 cut(s)	56, 64, 282, 375
DpnII	GATC	4 cut(s)	54, 62, 280, 373
DrdI	GACNNNNNNGTC	1 cut(s)	431
DseDI	GACNNNNNNGTC	1 cut(s)	431
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	1 cut(s)	425
FaiI	YATR	6 cut(s)	75, 169, 171, 226, 408, 423
FalI	AAGNNNNNCTT	4 cut(s)	243, 275, 395, 427
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	1 cut(s)	421
Fnu4HI	GCNGC	4 cut(s)	96, 120, 123, 126
FokI	GGATG	2 cut(s)	231, 353
Fsp4HI	GCNGC	4 cut(s)	96, 120, 123, 126
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	4 cut(s)	96, 120, 123, 126
HaeIII	GGCC	2 cut(s)	79, 214
HapII	CCGG	1 cut(s)	28
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	425
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	2 cut(s)	82, 140
HpaII	CCGG	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	4 cut(s)	42, 67, 315, 363
Hpy188III	TCNNGA	2 cut(s)	58, 86
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	410
HpyCH4III	ACNGT	2 cut(s)	289, 351
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 125
HpyF3I	CTNAG	1 cut(s)	356
Hsp92II	CATG	1 cut(s)	425
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	4 cut(s)	54, 62, 280, 373
LpnPI	CCDG	5 cut(s)	2, 41, 162, 196, 473
Lsp1109I	GCAGC	2 cut(s)	107, 137
MaeIII	GTNAC	1 cut(s)	351
MalI	GATC	4 cut(s)	56, 64, 282, 375
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	4 cut(s)	54, 62, 280, 373
MboII	GAAGA	2 cut(s)	266, 368
MfeI	CAATTG	1 cut(s)	436
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	1 cut(s)	436
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	4 cut(s)	139, 247, 283, 422
MseI	TTAA	1 cut(s)	402
MspI	CCGG	1 cut(s)	28
MunI	CAATTG	1 cut(s)	436
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	104, 125
NdeII	GATC	4 cut(s)	54, 62, 280, 373
NlaIII	CATG	1 cut(s)	425
NmeAIII	GCCGAG	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	140
PinAI	ACCGGT	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	97, 121, 124, 127
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	4 cut(s)	96, 120, 123, 126
Sau3AI	GATC	4 cut(s)	54, 62, 280, 373
ScaI	AGTACT	1 cut(s)	348
SchI	GAGTC	1 cut(s)	91
SetI	ASST	4 cut(s)	261, 275, 433, 462
Sse9I	AATT	1 cut(s)	436
SsiI	CCGC	5 cut(s)	6, 105, 120, 123, 338
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	2 cut(s)	289, 351
TaqI	TCGA	1 cut(s)	53
TaqII	GACCGA	1 cut(s)	441
TasI	AATT	1 cut(s)	436
TatI	WGTACW	1 cut(s)	346
TauI	GCSGC	2 cut(s)	122, 125
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TseI	GCWGC	2 cut(s)	95, 125
TspDTI	ATGAA	2 cut(s)	357, 435
TspGWI	ACGGA	1 cut(s)	281
ZrmI	AGTACT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.