Rmu_sc0000580.1_g000059

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000580.1
Physical Location & Seq
Forward (+)
244196 .. 248932
4737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000580.1_g000059.1.cds

Sequence Viewer

Length: 690 bp
atgcaagaagggatggagggaaatccatttgctaaaaccatgaagactgtttcaagaggcatggctgttcttacagttccgtttaccatggaatttccaaaggataggcatgtagctgtatgtcattctgataatccaaagggcactgctgaatttcatctgcaaactaccgtgctcgagattatggtctgttttggagtgaaggctgcgatgtttgttagagatgctaaggctctttgtccacaccttgtcattcttccttatgattttgaagcatatgaggaggcagtaagctgtgacgaagcatttttagatgtcacatacttggaaggggtagatatggatatgttagcctcaattataatacaagagatctttgagactactggatgcattgcaagtgctggcatagctagaaatatgctcatggctcgccttacaacaagaactgctaaaccagacggtcaatgcaacattcctcccaaaaggggtgaggatgttatcataaggaagaccactctcattgctcctaaggaggctcagcagcaagcttctttgtgttactcacgacgtgaccattgtataagcttatggcatagtgaaaccgggattatggaccaggttcaaagtttgttagtactgatggcagtacaggcagcaaggtctcagattcttcttagtgggttctga

Protein Analysis

229

Amino Acids

25.35

Weight (kDa)

5.52

Isoelectric Point (pI)

42.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 362
AcsI RAATTY 2 cut(s) 92, 152
AdeI CACNNNGTG 1 cut(s) 572
AfaI GTAC 2 cut(s) 639, 651
AfiI CCNNNNNNNGG 1 cut(s) 488
AgsI TTSAA 3 cut(s) 54, 272, 626
AjiI CACGTC 1 cut(s) 572
AjnI CCWGG 1 cut(s) 618
AluBI AGCT 5 cut(s) 116, 294, 413, 551, 588
AluI AGCT 5 cut(s) 116, 294, 413, 551, 588
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 2 cut(s) 374, 669
Ama87I CYCGRG 1 cut(s) 176
ApeKI GCWGC 3 cut(s) 206, 544, 656
ApoI RAATTY 2 cut(s) 92, 152
AspS9I GGNCC 1 cut(s) 616
AsuC2I CCSGG 1 cut(s) 607
AsuHPI GGTGA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 176
AvaII GGWCC 1 cut(s) 616
AxyI CCTNAGG 1 cut(s) 531
BaeGI GKGCMC 1 cut(s) 146
BbsI GAAGAC 2 cut(s) 50, 518
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 3 cut(s) 193, 556, 668
BccI CCATC 2 cut(s) 7, 637
BciT130I CCWGG 1 cut(s) 620
BcnI CCSGG 1 cut(s) 607
BcoDI GTCTC 2 cut(s) 374, 669
BfaI CTAG 1 cut(s) 414
BglII AGATCT 1 cut(s) 372
BisI GCNGC 3 cut(s) 207, 545, 657
BlpI GCTNAGC 1 cut(s) 540
BlsI GCNGC 3 cut(s) 208, 546, 658
BmcAI AGTACT 1 cut(s) 639
Bme1390I CCNGG 2 cut(s) 607, 620
Bme18I GGWCC 1 cut(s) 616
BmeT110I CYCGRG 1 cut(s) 176
BmgBI CACGTC 1 cut(s) 572
BmgT120I GGNCC 1 cut(s) 616
BmrFI CCNGG 2 cut(s) 607, 620
BmsI GCATC 2 cut(s) 214, 380
BpiI GAAGAC 2 cut(s) 50, 518
Bpu10I CCTNAGC 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 540
BpuMI CCSGG 1 cut(s) 607
BsaI GGTCTC 1 cut(s) 669
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 1 cut(s) 488
Bse1I ACTGG 1 cut(s) 391
Bse21I CCTNAGG 1 cut(s) 531
Bse3DI GCAATG 2 cut(s) 393, 522
BseBI CCWGG 1 cut(s) 620
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 3 cut(s) 18, 395, 502
BseLI CCNNNNNNNGG 1 cut(s) 488
BseMI GCAATG 2 cut(s) 393, 522
BseMII CTCAG 2 cut(s) 554, 680
BseNI ACTGG 1 cut(s) 391
BseRI GAGGAG 1 cut(s) 296
BseSI GKGCMC 1 cut(s) 146
BseXI GCAGC 3 cut(s) 193, 556, 668
BsiHKAI GWGCWC 1 cut(s) 177
BsiHKCI CYCGRG 1 cut(s) 176
BsiSI CCGG 1 cut(s) 606
BslI CCNNNNNNNGG 1 cut(s) 488
BsmAI GTCTC 2 cut(s) 374, 669
Bso31I GGTCTC 1 cut(s) 669
BsoBI CYCGRG 1 cut(s) 176
Bsp1286I GDGCHC 2 cut(s) 146, 177
Bsp143I GATC 1 cut(s) 372
Bsp1720I GCTNAGC 1 cut(s) 540
Bsp19I CCATGG 1 cut(s) 87
BspCNI CTCAG 2 cut(s) 553, 679
BspTNI GGTCTC 1 cut(s) 669
BsrDI GCAATG 2 cut(s) 393, 522
BsrI ACTGG 1 cut(s) 391
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 1 cut(s) 372
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 620
Bst4CI ACNGT 4 cut(s) 49, 76, 172, 464
BstC8I GCNNGC 3 cut(s) 406, 433, 549
BstDEI CTNAG 5 cut(s) 228, 531, 540, 666, 677
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 3 cut(s) 18, 395, 502
BstKTI GATC 1 cut(s) 375
BstMAI GTCTC 2 cut(s) 374, 669
BstMBI GATC 1 cut(s) 372
BstMWI GCNNNNNNNGC 2 cut(s) 410, 653
BstNI CCWGG 1 cut(s) 620
BstNSI RCATGY 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 605, 618
BstSLI GKGCMC 1 cut(s) 146
BstV1I GCAGC 3 cut(s) 193, 556, 668
BstV2I GAAGAC 2 cut(s) 50, 518
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
Bsu36I CCTNAGG 1 cut(s) 531
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 224
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 3 cut(s) 18, 395, 502
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 3 cut(s) 406, 433, 549
Cfr13I GGNCC 1 cut(s) 616
CsiI ACCWGGT 1 cut(s) 618
Csp6I GTAC 2 cut(s) 638, 650
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 5 cut(s) 40, 61, 88, 110, 427
CviQI GTAC 2 cut(s) 638, 650
DdeI CTNAG 5 cut(s) 228, 531, 540, 666, 677
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
DraIII CACNNNGTG 1 cut(s) 572
Eco130I CCWWGG 1 cut(s) 87
Eco31I GGTCTC 1 cut(s) 669
Eco47I GGWCC 1 cut(s) 616
Eco81I CCTNAGG 1 cut(s) 531
Eco88I CYCGRG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 618
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 5 cut(s) 43, 64, 91, 113, 430
FatI CATG 5 cut(s) 39, 60, 87, 109, 426
FauNDI CATATG 1 cut(s) 277
Fnu4HI GCNGC 3 cut(s) 207, 545, 657
FokI GGATG 3 cut(s) 25, 402, 509
Fsp4HI GCNGC 3 cut(s) 207, 545, 657
FspBI CTAG 1 cut(s) 414
GluI GCNGC 3 cut(s) 207, 545, 657
HapII CCGG 1 cut(s) 606
Hin1II CATG 5 cut(s) 43, 64, 91, 113, 430
HindIII AAGCTT 2 cut(s) 549, 586
HinfI GANTC 1 cut(s) 670
HpaII CCGG 1 cut(s) 606
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 2 cut(s) 84, 242
Hpy188I TCNGA 3 cut(s) 130, 669, 689
Hpy188III TCNNGA 3 cut(s) 54, 178, 567
Hpy8I GTNNAC 2 cut(s) 84, 242
Hpy99I CGWCG 1 cut(s) 573
HpyAV CCTTC 2 cut(s) 196, 323
HpyCH4III ACNGT 4 cut(s) 49, 76, 172, 464
HpyCH4IV ACGT 1 cut(s) 571
HpyCH4V TGCA 5 cut(s) 4, 163, 393, 398, 471
HpyF10VI GCNNNNNNNGC 2 cut(s) 410, 653
HpyF3I CTNAG 5 cut(s) 228, 531, 540, 666, 677
HpySE526I ACGT 1 cut(s) 571
Hsp92II CATG 5 cut(s) 43, 64, 91, 113, 430
Kzo9I GATC 1 cut(s) 372
LmnI GCTCC 1 cut(s) 532
LpnPI CCDG 7 cut(s) 372, 390, 471, 605, 619, 632, 638
Lsp1109I GCAGC 3 cut(s) 193, 556, 668
LweI GCATC 2 cut(s) 214, 380
MabI ACCWGGT 1 cut(s) 618
MaeI CTAG 1 cut(s) 414
MaeII ACGT 1 cut(s) 571
MaeIII GTNAC 4 cut(s) 296, 316, 560, 572
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MboII GAAGA 4 cut(s) 55, 248, 523, 665
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 2 cut(s) 146, 177
MluCI AATT 3 cut(s) 92, 152, 357
MnlI CCTC 8 cut(s) 10, 50, 274, 277, 364, 487, 489, 529
Mph1103I ATGCAT 1 cut(s) 395
MspI CCGG 1 cut(s) 606
MspR9I CCNGG 2 cut(s) 607, 620
MvaI CCWGG 1 cut(s) 620
MwoI GCNNNNNNNGC 2 cut(s) 410, 653
NciI CCSGG 1 cut(s) 607
NcoI CCATGG 1 cut(s) 87
NdeI CATATG 1 cut(s) 277
NdeII GATC 1 cut(s) 372
NlaIII CATG 5 cut(s) 43, 64, 91, 113, 430
NmuCI GTSAC 3 cut(s) 296, 316, 572
NsiI ATGCAT 1 cut(s) 395
NspI RCATGY 1 cut(s) 113
PaeR7I CTCGAG 1 cut(s) 176
PfeI GAWTC 1 cut(s) 670
PkrI GCNGC 3 cut(s) 208, 546, 658
PsiI TTATAA 1 cut(s) 362
Psp6I CCWGG 1 cut(s) 618
PspGI CCWGG 1 cut(s) 618
PspPI GGNCC 1 cut(s) 616
PsuI RGATCY 1 cut(s) 372
RsaI GTAC 2 cut(s) 639, 651
RsaNI GTAC 2 cut(s) 638, 650
SatI GCNGC 3 cut(s) 207, 545, 657
Sau3AI GATC 1 cut(s) 372
Sau96I GGNCC 1 cut(s) 616
ScaI AGTACT 1 cut(s) 639
ScrFI CCNGG 2 cut(s) 607, 620
SduI GDGCHC 2 cut(s) 146, 177
SetI ASST 9 cut(s) 118, 249, 296, 415, 553, 574, 590, 624, 665
SexAI ACCWGGT 1 cut(s) 618
SfaNI GCATC 2 cut(s) 214, 380
Sfr274I CTCGAG 1 cut(s) 176
SinI GGWCC 1 cut(s) 616
SlaI CTCGAG 1 cut(s) 176
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 3 cut(s) 92, 152, 357
SspMI CTAG 1 cut(s) 414
StyD4I CCNGG 2 cut(s) 605, 618
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 4 cut(s) 49, 76, 172, 464
TaiI ACGT 1 cut(s) 574
TaqI TCGA 1 cut(s) 177
TasI AATT 3 cut(s) 92, 152, 357
TatI WGTACW 2 cut(s) 637, 649
TfiI GAWTC 1 cut(s) 670
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 3 cut(s) 296, 316, 572
TseI GCWGC 3 cut(s) 206, 544, 656
Tsp45I GTSAC 3 cut(s) 296, 316, 572
TspDTI ATGAA 2 cut(s) 56, 146
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 616
XapI RAATTY 2 cut(s) 92, 152
XceI RCATGY 1 cut(s) 113
XhoI CTCGAG 1 cut(s) 176
XspI CTAG 1 cut(s) 414
ZrmI AGTACT 1 cut(s) 639
Zsp2I ATGCAT 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.