Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Reverse (-)

14239942 .. 14242782

Gene Structure 2841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00294040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGGGAACTCGGGAAGACCGCGGAGAAGATCGGAGAGCTTTCATCCGAAGACGGCCACAAAGGCGCATTTATGCTCTTAGCCGGAGTCCCGATGGCAAACAGCGACGCCATGAGCAAAGCGATGCCGGAAGTGAACCGGTCGCCGTACTAGAAACTCAAATCGATCAAGAGATTGGATCGGTACAGCCGAATCCCGAGTTGCAACCATTTCCGCCGATCGCGAAGCCGCCACCGCCTCGGACCCTCGATTCGCCGTCACCGATGACGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

90

Amino Acids

10.18

Weight (kDa)

9.66

Isoelectric Point (pI)

113.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	269
AccII	CGCG	2 cut(s)	21, 221
AciI	CCGC	5 cut(s)	19, 21, 212, 227, 233
AclWI	GGATC	1 cut(s)	184
AcoI	YGGCCR	1 cut(s)	53
AcyI	GRCGYC	2 cut(s)	106, 266
AfaI	GTAC	2 cut(s)	147, 183
AgeI	ACCGGT	1 cut(s)	136
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	2 cut(s)	9, 194
AoxI	GGCC	1 cut(s)	53
ArsI	GACNNNNNNTTYG	2 cut(s)	232, 264
AsiGI	ACCGGT	1 cut(s)	136
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	249
AvaI	CYCGRG	2 cut(s)	9, 194
AvaII	GGWCC	1 cut(s)	240
BbsI	GAAGAC	2 cut(s)	21, 55
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	3 cut(s)	68, 128, 238
BfaI	CTAG	1 cut(s)	149
BglI	GCCNNNNNGGC	1 cut(s)	61
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	240
BmeT110I	CYCGRG	2 cut(s)	9, 194
BmgT120I	GGNCC	1 cut(s)	240
BmiI	GGNNCC	1 cut(s)	242
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	21, 55
Bsa29I	ATCGAT	1 cut(s)	162
BsaHI	GRCGYC	2 cut(s)	106, 266
BsaJI	CCNNGG	2 cut(s)	19, 236
BsaWI	WCCGGW	1 cut(s)	136
Bse118I	RCCGGY	1 cut(s)	136
BseCI	ATCGAT	1 cut(s)	162
BseDI	CCNNGG	2 cut(s)	19, 236
BseGI	GGATG	1 cut(s)	42
Bsh1236I	CGCG	2 cut(s)	21, 221
Bsh1285I	CGRYCG	2 cut(s)	141, 219
BshFI	GGCC	1 cut(s)	55
BshTI	ACCGGT	1 cut(s)	136
BshVI	ATCGAT	1 cut(s)	162
BsiEI	CGRYCG	2 cut(s)	141, 219
BsiHKCI	CYCGRG	2 cut(s)	9, 194
BsiSI	CCGG	3 cut(s)	82, 126, 137
BslFI	GGGAC	1 cut(s)	72
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	1 cut(s)	55
BsoBI	CYCGRG	2 cut(s)	9, 194
Bsp143I	GATC	4 cut(s)	28, 163, 176, 216
Bsp68I	TCGCGA	1 cut(s)	221
BspACI	CCGC	5 cut(s)	19, 21, 212, 227, 233
BspANI	GGCC	1 cut(s)	55
BspDI	ATCGAT	1 cut(s)	162
BspFNI	CGCG	2 cut(s)	21, 221
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	184
BsrFI	RCCGGY	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	136
BssECI	CCNNGG	2 cut(s)	19, 236
BssMI	GATC	4 cut(s)	28, 163, 176, 216
BssNI	GRCGYC	2 cut(s)	106, 266
BstACI	GRCGYC	2 cut(s)	106, 266
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	42
BstFNI	CGCG	2 cut(s)	21, 221
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	4 cut(s)	31, 166, 179, 219
BstMBI	GATC	4 cut(s)	28, 163, 176, 216
BstMCI	CGRYCG	2 cut(s)	141, 219
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 232
BstUI	CGCG	2 cut(s)	21, 221
BstV2I	GAAGAC	2 cut(s)	21, 55
Bsu15I	ATCGAT	1 cut(s)	162
BsuRI	GGCC	1 cut(s)	55
BsuTUI	ATCGAT	1 cut(s)	162
BtgI	CCRYGG	1 cut(s)	19
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	42
BtuMI	TCGCGA	1 cut(s)	221
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	240
Cfr42I	CCGCGG	1 cut(s)	22
ClaI	ATCGAT	1 cut(s)	162
CseI	GACGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	146, 182
CspAI	ACCGGT	1 cut(s)	136
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	5 cut(s)	38, 55, 81, 187, 226
CviKI_1	RGCY	5 cut(s)	38, 55, 81, 187, 226
CviQI	GTAC	2 cut(s)	146, 182
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	4 cut(s)	30, 165, 178, 218
DpnII	GATC	4 cut(s)	28, 163, 176, 216
EaeI	YGGCCR	1 cut(s)	53
EciI	GGCGGA	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	240
Eco88I	CYCGRG	2 cut(s)	9, 194
FaeI	CATG	1 cut(s)	113
FaiI	YATR	2 cut(s)	72, 111
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	1 cut(s)	149
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	3 cut(s)	82, 126, 137
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	66
Hin1I	GRCGYC	2 cut(s)	106, 266
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HinfI	GANTC	3 cut(s)	85, 190, 248
HpaII	CCGG	3 cut(s)	82, 126, 137
HphI	GGTGA	1 cut(s)	249
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	3 cut(s)	33, 47, 240
Hpy188III	TCNNGA	6 cut(s)	11, 89, 167, 194, 220, 270
Hpy8I	GTNNAC	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	266
HpyCH4V	TGCA	1 cut(s)	202
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 232
HpyF3I	CTNAG	1 cut(s)	77
HpySE526I	ACGT	1 cut(s)	266
Hsp92I	GRCGYC	2 cut(s)	106, 266
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	64
KspI	CCGCGG	1 cut(s)	22
Kzo9I	GATC	4 cut(s)	28, 163, 176, 216
LpnPI	CCDG	3 cut(s)	95, 139, 150
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	149
MaeII	ACGT	1 cut(s)	266
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	4 cut(s)	30, 165, 178, 218
MboI	GATC	4 cut(s)	28, 163, 176, 216
MboII	GAAGA	3 cut(s)	26, 38, 60
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	2 cut(s)	246, 254
MspA1I	CMGCKG	1 cut(s)	21
MspI	CCGG	3 cut(s)	82, 126, 137
MvnI	CGCG	2 cut(s)	21, 221
MwoI	GCNNNNNNNGC	2 cut(s)	61, 232
NdeII	GATC	4 cut(s)	28, 163, 176, 216
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	255
NruI	TCGCGA	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	2 cut(s)	185, 257
PfeI	GAWTC	2 cut(s)	190, 248
PinAI	ACCGGT	1 cut(s)	136
PkrI	GCNGC	1 cut(s)	228
Ple19I	CGATCG	1 cut(s)	219
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	240
PvuI	CGATCG	1 cut(s)	219
RruI	TCGCGA	1 cut(s)	221
RsaI	GTAC	2 cut(s)	147, 183
RsaNI	GTAC	2 cut(s)	146, 182
SacII	CCGCGG	1 cut(s)	22
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	4 cut(s)	28, 163, 176, 216
Sau96I	GGNCC	1 cut(s)	240
SchI	GAGTC	1 cut(s)	94
SetI	ASST	2 cut(s)	40, 269
SfaNI	GCATC	1 cut(s)	112
Sfr303I	CCGCGG	1 cut(s)	22
SgrBI	CCGCGG	1 cut(s)	22
SinI	GGWCC	1 cut(s)	240
SsiI	CCGC	5 cut(s)	19, 21, 212, 227, 233
SspMI	CTAG	1 cut(s)	149
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	2 cut(s)	162, 246
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	190, 248
TseFI	GTSAC	1 cut(s)	255
Tsp45I	GTSAC	1 cut(s)	255
TspDTI	ATGAA	1 cut(s)	31
VpaK11BI	GGWCC	1 cut(s)	240
XspI	CTAG	1 cut(s)	149
ZraI	GACGTC	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.