RLG00000030162

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
56597091 .. 56597411
321 bp
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UTR
Exon/CDS
Intron
RLM00000030162

Sequence Viewer

Length: 321 bp
ATGGAACAGGCAGTCGCGAACTTGTATTTCAGTTTTGACAGGCCACAATCATTATGTATCTATGCCTCATTCCATCCTAAAGAAGACCTTGTTGTATCTACCTCCTTGGATCAAACTGTCCGTGTTTGGGATATTGGTTCTCTGAAAAAGAAGTTTGTGTCACCTGCGGATGATGTACTGCAACCAAGTCAGATGAACACAGATCTTCTTTGTGGTGTTGTTGCTGTTGTTAAGTATGTCTTGGAAGGGCATGACCGAGGTGTCAATTGGGCTTCATTCCACCCTAACCTGCTTCTCATTGTCTCAGGAGCAGATGATTAA

Protein Analysis

107

Amino Acids

11.77

Weight (kDa)

4.92

Isoelectric Point (pI)

28.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 172
AasI GACNNNNNNGTC 1 cut(s) 260
Acc36I ACCTGC 2 cut(s) 172, 297
AccII CGCG 1 cut(s) 17
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 117
AfaI GTAC 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 307
AlwI GGATC 1 cut(s) 117
AoxI GGCC 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 90
BccI CCATC 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 307
BfuAI ACCTGC 2 cut(s) 172, 297
BglII AGATCT 1 cut(s) 202
BpiI GAAGAC 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 105, 256
Bsc4I CCNNNNNNNGG 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 105, 256
BseGI GGATG 2 cut(s) 73, 175
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 1 cut(s) 318
Bsh1236I CGCG 1 cut(s) 17
BshFI GGCC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 307
BsnI GGCC 1 cut(s) 43
Bsp143I GATC 2 cut(s) 109, 202
Bsp68I TCGCGA 1 cut(s) 17
BspACI CCGC 1 cut(s) 167
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 1 cut(s) 317
BspFNI CGCG 1 cut(s) 17
BspMI ACCTGC 2 cut(s) 172, 297
BspPI GGATC 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 105, 256
BssMI GATC 2 cut(s) 109, 202
BssT1I CCWWGG 1 cut(s) 105
Bst4CI ACNGT 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 304
BstF5I GGATG 2 cut(s) 73, 175
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 2 cut(s) 112, 205
BstMAI GTCTC 1 cut(s) 307
BstMBI GATC 2 cut(s) 109, 202
BstUI CGCG 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 2 cut(s) 73, 175
BtuMI TCGCGA 1 cut(s) 17
BveI ACCTGC 2 cut(s) 172, 297
Csp6I GTAC 1 cut(s) 176
CviAII CATG 1 cut(s) 251
CviJI RGCY 2 cut(s) 43, 272
CviKI_1 RGCY 2 cut(s) 43, 272
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 1 cut(s) 304
DpnI GATC 2 cut(s) 111, 204
DpnII GATC 2 cut(s) 109, 202
DrdI GACNNNNNNGTC 1 cut(s) 260
DseDI GACNNNNNNGTC 1 cut(s) 260
Eco130I CCWWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 1 cut(s) 254
FaiI YATR 4 cut(s) 55, 63, 237, 252
FalI AAGNNNNNCTT 4 cut(s) 72, 104, 224, 256
FatI CATG 1 cut(s) 250
FokI GGATG 2 cut(s) 60, 182
HaeIII GGCC 1 cut(s) 43
Hin1II CATG 1 cut(s) 254
HphI GGTGA 1 cut(s) 153
Hpy188I TCNGA 2 cut(s) 144, 192
Hpy188III TCNNGA 2 cut(s) 16, 306
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 304
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 2 cut(s) 109, 202
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 4 cut(s) 25, 177, 291, 302
MaeIII GTNAC 1 cut(s) 159
MalI GATC 2 cut(s) 111, 204
MboI GATC 2 cut(s) 109, 202
MboII GAAGA 2 cut(s) 95, 197
MfeI CAATTG 1 cut(s) 265
MflI RGATCY 1 cut(s) 202
MluCI AATT 1 cut(s) 265
MnlI CCTC 3 cut(s) 76, 112, 251
MseI TTAA 2 cut(s) 231, 319
MunI CAATTG 1 cut(s) 265
MvnI CGCG 1 cut(s) 17
NdeII GATC 2 cut(s) 109, 202
NlaIII CATG 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 159
NruI TCGCGA 1 cut(s) 17
PaqCI CACCTGC 1 cut(s) 172
PsuI RGATCY 1 cut(s) 202
RruI TCGCGA 1 cut(s) 17
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SaqAI TTAA 2 cut(s) 231, 319
Sau3AI GATC 2 cut(s) 109, 202
SetI ASST 5 cut(s) 90, 104, 166, 262, 291
Sse9I AATT 1 cut(s) 265
SsiI CCGC 1 cut(s) 167
StyI CCWWGG 1 cut(s) 105
TaaI ACNGT 1 cut(s) 118
TaqII GACCGA 1 cut(s) 270
TasI AATT 1 cut(s) 265
TatI WGTACW 1 cut(s) 175
Tru1I TTAA 2 cut(s) 231, 319
Tru9I TTAA 2 cut(s) 231, 319
TseFI GTSAC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 159
TspDTI ATGAA 2 cut(s) 209, 264
TspGWI ACGGA 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.