Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Forward (+)

24830270 .. 24831047

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCCGTCGCGTTTTTTCTCTACTGCCACCGAGTCAAGCACCAATCAAAGACTCAGAAACTTGTGAATGGCGGAGGAAGCAGCTCGCAGTGGTTCGCCAACGATTCCAGAGCGGCGCCTTCGAGCTTCCTCTATATTGGCACCGTCGAGCAGAGCCACAACTCCACGAGTAGCGACGCCATGGGCGGAGCAACGCCGGAAGTGAATCGGTCGCCGTACCGGAAACTCAACAGATTGGATCGCTGGAGCCACTCGCCACACTTGTACTCGCCGGACATCGACCGCGGCGGGATTTTGTACACGACGACCTCGCGCACCACCAGCAGCGTGTGCTCGAACGACTCCTCCTCGTCCTTGAACGGCATCGTTTTGGACCTTATTAGATTCCGGTCATCAAATGCGGTGGCTGTGGTGATAGCTAGGAAAGAAAGAATGAAACGTGGGTTACTTCAAATGTCAAAACATTCTCTGTGCTATTATTATGGGTGGTGGTGGTGGGGACTGGGGAGGTTGAGATGGAAGGTGACGGGGCTAGGGATGAGGAGCAGGCATTATGGGATTTATGTCAAGTGTGATGTGCTAGATGGGTTGAAGAAAGGGTTCGTGGGTCAAGTTCCATTGTTGGGTTCTCCTGATTGTAAAGTTGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

217

Amino Acids

24.33

Weight (kDa)

9.88

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	115, 140
AccBSI	CCGCTC	1 cut(s)	113
AccII	CGCG	3 cut(s)	11, 285, 313
AciI	CCGC	7 cut(s)	72, 113, 186, 283, 285, 288, 401
AclWI	GGATC	1 cut(s)	246
AcyI	GRCGYC	2 cut(s)	116, 177
AfaI	GTAC	3 cut(s)	218, 266, 299
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	358, 452, 592
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	3 cut(s)	84, 126, 419
AluI	AGCT	3 cut(s)	84, 126, 419
Alw21I	GWGCWC	1 cut(s)	335
AlwI	GGATC	1 cut(s)	246
ApeKI	GCWGC	2 cut(s)	81, 324
Asp700I	GAANNNNTTC	1 cut(s)	599
AspLEI	GCGC	2 cut(s)	118, 315
AspS9I	GGNCC	1 cut(s)	373
AsuHPI	GGTGA	2 cut(s)	424, 535
AvaII	GGWCC	1 cut(s)	373
BanI	GGYRCC	2 cut(s)	115, 140
BauI	CACGAG	1 cut(s)	166
Bbv12I	GWGCWC	1 cut(s)	335
BbvI	GCAGC	2 cut(s)	93, 336
BccI	CCATC	2 cut(s)	510, 578
BceAI	ACGGC	2 cut(s)	199, 376
BfaI	CTAG	3 cut(s)	420, 533, 581
BfoI	RGCGCY	1 cut(s)	119
BisI	GCNGC	4 cut(s)	82, 114, 286, 325
BlsI	GCNGC	4 cut(s)	83, 115, 287, 326
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	373
BmiI	GGNNCC	3 cut(s)	117, 142, 248
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	1 cut(s)	372
BmuI	ACTGGG	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	265
BsaHI	GRCGYC	2 cut(s)	116, 177
BsaJI	CCNNGG	2 cut(s)	180, 283
BsaWI	WCCGGW	2 cut(s)	219, 387
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse1I	ACTGG	1 cut(s)	507
BseDI	CCNNGG	2 cut(s)	180, 283
BseGI	GGATG	1 cut(s)	543
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	3 cut(s)	334, 337, 556
BseXI	GCAGC	2 cut(s)	93, 336
Bsh1236I	CGCG	3 cut(s)	11, 285, 313
Bsh1285I	CGRYCG	2 cut(s)	212, 283
BshNI	GGYRCC	2 cut(s)	115, 140
BsiEI	CGRYCG	2 cut(s)	212, 283
BsiHKAI	GWGCWC	1 cut(s)	335
BsiSI	CCGG	4 cut(s)	197, 220, 272, 388
BslFI	GGGAC	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	513
Bsp1286I	GDGCHC	1 cut(s)	335
Bsp1407I	TGTACA	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	238
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	7 cut(s)	72, 113, 186, 283, 285, 288, 401
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	3 cut(s)	11, 285, 313
BspLI	GGNNCC	3 cut(s)	117, 142, 248
BspPI	GGATC	1 cut(s)	246
BspT107I	GGYRCC	2 cut(s)	115, 140
BsrBI	CCGCTC	1 cut(s)	113
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	507
BssECI	CCNNGG	2 cut(s)	180, 283
BssMI	GATC	1 cut(s)	238
BssNI	GRCGYC	2 cut(s)	116, 177
BssSI	CACGAG	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	180
Bst2BI	CACGAG	1 cut(s)	166
Bst4CI	ACNGT	1 cut(s)	145
BstACI	GRCGYC	2 cut(s)	116, 177
BstAPI	GCANNNNNTGC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	86, 548
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	2 cut(s)	180, 283
BstF5I	GGATG	1 cut(s)	543
BstFNI	CGCG	3 cut(s)	11, 285, 313
BstH2I	RGCGCY	1 cut(s)	119
BstHHI	GCGC	2 cut(s)	118, 315
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMCI	CGRYCG	2 cut(s)	212, 283
BstMWI	GCNNNNNNNGC	3 cut(s)	78, 321, 330
BstUI	CGCG	3 cut(s)	11, 285, 313
BstV1I	GCAGC	2 cut(s)	93, 336
BtgI	CCRYGG	2 cut(s)	180, 283
BtsCI	GGATG	1 cut(s)	543
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	2 cut(s)	86, 548
CfoI	GCGC	2 cut(s)	118, 315
Cfr13I	GGNCC	1 cut(s)	373
Cfr42I	CCGCGG	1 cut(s)	286
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	3 cut(s)	217, 265, 298
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	7 cut(s)	84, 126, 156, 249, 407, 419, 532
CviKI_1	RGCY	7 cut(s)	84, 126, 156, 249, 407, 419, 532
CviQI	GTAC	3 cut(s)	217, 265, 298
DdeI	CTNAG	1 cut(s)	54
DinI	GGCGCC	1 cut(s)	117
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
EciI	GGCGGA	2 cut(s)	87, 201
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	180
EgeI	GGCGCC	1 cut(s)	117
EheI	GGCGCC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	1 cut(s)	184
FaiI	YATR	7 cut(s)	135, 182, 483, 555, 564, 650, 652
FaqI	GGGAC	1 cut(s)	513
FatI	CATG	1 cut(s)	180
FauI	CCCGC	1 cut(s)	281
Fnu4HI	GCNGC	4 cut(s)	82, 114, 286, 325
FokI	GGATG	1 cut(s)	550
Fsp4HI	GCNGC	4 cut(s)	82, 114, 286, 325
FspBI	CTAG	3 cut(s)	420, 533, 581
GlaI	GCGC	2 cut(s)	117, 314
GluI	GCNGC	4 cut(s)	82, 114, 286, 325
GsuI	CTGGAG	1 cut(s)	265
HaeII	RGCGCY	1 cut(s)	119
HapII	CCGG	4 cut(s)	197, 220, 272, 388
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	2 cut(s)	118, 315
Hin1I	GRCGYC	2 cut(s)	116, 177
Hin1II	CATG	1 cut(s)	184
Hin6I	GCGC	2 cut(s)	116, 313
HinP1I	GCGC	2 cut(s)	116, 313
HinfI	GANTC	6 cut(s)	33, 52, 104, 205, 341, 384
HpaII	CCGG	4 cut(s)	197, 220, 272, 388
HphI	GGTGA	2 cut(s)	424, 535
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	108, 632
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	4 cut(s)	11, 149, 179, 307
HpyAV	CCTTC	2 cut(s)	129, 514
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	3 cut(s)	78, 321, 330
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	439
Hsp92I	GRCGYC	2 cut(s)	116, 177
Hsp92II	CATG	1 cut(s)	184
HspAI	GCGC	2 cut(s)	116, 313
KasI	GGCGCC	1 cut(s)	115
KspI	CCGCGG	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	3 cut(s)	188, 246, 543
Lsp1109I	GCAGC	2 cut(s)	93, 336
LweI	GCATC	1 cut(s)	372
MaeI	CTAG	3 cut(s)	420, 533, 581
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	2 cut(s)	444, 523
MalI	GATC	1 cut(s)	240
MbiI	CCGCTC	1 cut(s)	113
MboI	GATC	1 cut(s)	238
MboII	GAAGA	1 cut(s)	604
MhlI	GDGCHC	1 cut(s)	335
Mly113I	GGCGCC	1 cut(s)	116
MlyI	GAGTC	3 cut(s)	42, 46, 335
MnlI	CCTC	7 cut(s)	68, 140, 319, 355, 358, 501, 534
MroXI	GAANNNNTTC	1 cut(s)	599
MspA1I	CMGCKG	1 cut(s)	285
MspI	CCGG	4 cut(s)	197, 220, 272, 388
MvnI	CGCG	3 cut(s)	11, 285, 313
MwoI	GCNNNNNNNGC	3 cut(s)	78, 321, 330
NarI	GGCGCC	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	1 cut(s)	184
NlaIV	GGNNCC	3 cut(s)	117, 142, 248
NmuCI	GTSAC	1 cut(s)	523
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	3 cut(s)	104, 205, 384
PkrI	GCNGC	4 cut(s)	83, 115, 287, 326
PleI	GAGTC	3 cut(s)	41, 46, 335
PluTI	GGCGCC	1 cut(s)	119
PpsI	GAGTC	3 cut(s)	41, 46, 335
PspN4I	GGNNCC	3 cut(s)	117, 142, 248
PspPI	GGNCC	1 cut(s)	373
RsaI	GTAC	3 cut(s)	218, 266, 299
RsaNI	GTAC	3 cut(s)	217, 265, 298
SacII	CCGCGG	1 cut(s)	286
SatI	GCNGC	4 cut(s)	82, 114, 286, 325
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	1 cut(s)	373
SchI	GAGTC	3 cut(s)	42, 46, 335
SduI	GDGCHC	1 cut(s)	335
SetI	ASST	8 cut(s)	86, 128, 311, 378, 421, 442, 512, 525
SfaNI	GCATC	1 cut(s)	372
SfoI	GGCGCC	1 cut(s)	117
Sfr303I	CCGCGG	1 cut(s)	286
SgrBI	CCGCGG	1 cut(s)	286
SinI	GGWCC	1 cut(s)	373
SsiI	CCGC	7 cut(s)	72, 113, 186, 283, 285, 288, 401
SspDI	GGCGCC	1 cut(s)	115
SspMI	CTAG	3 cut(s)	420, 533, 581
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	4 cut(s)	122, 147, 279, 335
TaqII	GACCGA	1 cut(s)	198
TatI	WGTACW	2 cut(s)	264, 297
TauI	GCSGC	2 cut(s)	116, 288
TfiI	GAWTC	3 cut(s)	104, 205, 384
TscAI	CASTG	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	523
TseI	GCWGC	2 cut(s)	81, 324
Tsp45I	GTSAC	1 cut(s)	523
TspDTI	ATGAA	1 cut(s)	449
TspRI	CASTG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	3 cut(s)	420, 533, 581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.