Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Forward (+)

4023962 .. 4024285

Gene Structure 324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG032700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGAACAACCAGTCGCGCACTTGTATTTCAGTTTTGACAGGCCACAATCATTATGTATCTGTGCCTCATTCCATCCTAAAGAAGACCTTGTTGTATCTACCTCCTTGGATGAAACTGTCCATGTTTGGGATATTGGTTCTCTAAAAAAGAAGTATGTGTCTCCTGCAGATGATGTACTGCGACTAAGTCAGATGAACACAGATCTTCTTGGTGGTGTTGTTGCTGTTGTTAAGTATGTCTTGGAAGGGCATGACCGAGGTGTCAATTGGGCTTCATTCCACCCCAACCTGCCTCTCATTGTCTCAGGAGCAGCTGATTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005798 GO:0005829 GO:0005886 GO:0006810 GO:0006886 GO:0006888 GO:0006890 GO:0006891 GO:0008104 GO:0008150 GO:0012505 GO:0012506 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0030117 GO:0030120 GO:0030126 GO:0030135 GO:0030137 GO:0030659 GO:0030660 GO:0030662 GO:0030663 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048475 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C Coatomer_WDAD WD40

Protein Analysis

107

Amino Acids

11.8

Weight (kDa)

5.33

Isoelectric Point (pI)

27.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	16 - 47	3.6e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
Acc36I	ACCTGC	1 cut(s)	297
AccII	CGCG	1 cut(s)	17
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw26I	GTCTC	2 cut(s)	165, 307
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	19
BbsI	GAAGAC	1 cut(s)	90
BccI	CCATC	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	165, 307
BfmI	CTRYAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	297
BglII	AGATCT	1 cut(s)	202
BisI	GCNGC	1 cut(s)	312
BlsI	GCNGC	1 cut(s)	313
BpiI	GAAGAC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	105, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	105, 256
BseGI	GGATG	2 cut(s)	73, 115
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	17
BshFI	GGCC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmAI	GTCTC	2 cut(s)	165, 307
BsnI	GGCC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	202
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	317
BspFNI	CGCG	1 cut(s)	17
BspMAI	CTGCAG	1 cut(s)	169
BspMI	ACCTGC	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	105, 256
BssMI	GATC	1 cut(s)	202
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	185, 304
BstF5I	GGATG	2 cut(s)	73, 115
BstFNI	CGCG	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	2 cut(s)	165, 307
BstMBI	GATC	1 cut(s)	202
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	202
BstYI	RGATCY	1 cut(s)	202
BsuRI	GGCC	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	73, 115
BveI	ACCTGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	2 cut(s)	122, 251
CviJI	RGCY	3 cut(s)	43, 272, 314
CviKI_1	RGCY	3 cut(s)	43, 272, 314
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	2 cut(s)	185, 304
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	2 cut(s)	125, 254
FaiI	YATR	5 cut(s)	55, 123, 156, 237, 252
FalI	AAGNNNNNCTT	4 cut(s)	72, 104, 224, 256
FatI	CATG	2 cut(s)	121, 250
Fnu4HI	GCNGC	1 cut(s)	312
FokI	GGATG	2 cut(s)	60, 122
Fsp4HI	GCNGC	1 cut(s)	312
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	312
HaeIII	GGCC	1 cut(s)	43
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	125, 254
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	1 cut(s)	306
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	1 cut(s)	167
HpyF3I	CTNAG	2 cut(s)	185, 304
Hsp92II	CATG	2 cut(s)	125, 254
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	5 cut(s)	24, 25, 177, 291, 302
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	2 cut(s)	95, 197
MfeI	CAATTG	1 cut(s)	265
MflI	RGATCY	1 cut(s)	202
MluCI	AATT	1 cut(s)	265
MnlI	CCTC	4 cut(s)	76, 112, 251, 303
MseI	TTAA	1 cut(s)	231
MspA1I	CMGCKG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	265
MvnI	CGCG	1 cut(s)	17
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	2 cut(s)	125, 254
PflFI	GACNNNGTC	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	313
PstI	CTGCAG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	202
PsyI	GACNNNGTC	1 cut(s)	186
PvuII	CAGCTG	1 cut(s)	314
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	312
Sau3AI	GATC	1 cut(s)	202
SetI	ASST	5 cut(s)	90, 104, 262, 291, 316
SfcI	CTRYAG	1 cut(s)	165
Sse9I	AATT	1 cut(s)	265
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	118
TaqII	GACCGA	1 cut(s)	270
TasI	AATT	1 cut(s)	265
TatI	WGTACW	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	3 cut(s)	126, 209, 264
Tth111I	GACNNNGTC	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.