Rroxscaffold_176G00431130

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000176
Physical Location & Seq
Forward (+)
383390 .. 387112
3723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_176G00431130.1

Sequence Viewer

Length: 366 bp
ATGCTTGACTGGGATCCCAATGGCAAGCAAGGACCCATGACTCCTCTACCTGATCTTGCAGTAAGCTGTGACGAAGCATTTTTAGATGTCACATACTTGGAAGGGGTAGATATGGATATGTTAGCCTCAATTATAATACAAGAGATCTTTGAGACTATTGGATGCATTGCAAGTGCTGGCATAGCTAGAAATATGCTCATGGCTCACCTTACAACAAGAACTGCTAAACCAGACGGTCAATGCAGCATTCCTCCCAAAAGGGCTAATTATGGTCATGGTAAGTGCGGCCTATATAAGGGTACATGGCTAGAGTTGGAAGGTATATGGTTGGAAGGCATGTGTGGTTGGACATATTGTCGGATATGA

Protein Analysis

121

Amino Acids

13.34

Weight (kDa)

4.69

Isoelectric Point (pI)

14.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMS PF00817 21 - 72 3.6e-07 impB/mucB/samB family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 134
AciI CCGC 1 cut(s) 285
AclWI GGATC 2 cut(s) 8, 21
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 295
AhdI GACNNNNNGTC 1 cut(s) 354
AluBI AGCT 2 cut(s) 66, 185
AluI AGCT 2 cut(s) 66, 185
Alw26I GTCTC 1 cut(s) 146
AlwI GGATC 2 cut(s) 8, 21
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 1 cut(s) 32
BamHI GGATCC 1 cut(s) 13
BbvI GCAGC 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 146
BfaI CTAG 2 cut(s) 186, 308
BglII AGATCT 1 cut(s) 144
BisI GCNGC 2 cut(s) 244, 286
BlsI GCNGC 2 cut(s) 245, 287
Bme18I GGWCC 1 cut(s) 32
BmeRI GACNNNNNGTC 1 cut(s) 354
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 15, 34
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 165
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 14
BseRI GAGGAG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 255
BshFI GGCC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 146
BsmI GAATGC 1 cut(s) 246
BsnI GGCC 1 cut(s) 288
Bsp143I GATC 3 cut(s) 13, 52, 144
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 288
BspLI GGNNCC 2 cut(s) 15, 34
BspPI GGATC 2 cut(s) 8, 21
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 14
BssMI GATC 3 cut(s) 13, 52, 144
Bst4CI ACNGT 1 cut(s) 236
BstC8I GCNNGC 2 cut(s) 26, 178
BstENI CCTNNNNNAGG 1 cut(s) 293
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 3 cut(s) 16, 55, 147
BstMAI GTCTC 1 cut(s) 146
BstMBI GATC 3 cut(s) 13, 52, 144
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstNSI RCATGY 1 cut(s) 340
BstV1I GCAGC 1 cut(s) 255
BstX2I RGATCY 2 cut(s) 13, 144
BstYI RGATCY 2 cut(s) 13, 144
BsuRI GGCC 1 cut(s) 288
BtsCI GGATG 1 cut(s) 167
Cac8I GCNNGC 2 cut(s) 26, 178
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 300
CviAII CATG 5 cut(s) 37, 199, 275, 303, 337
CviJI RGCY 7 cut(s) 66, 125, 185, 203, 263, 288, 307
CviKI_1 RGCY 7 cut(s) 66, 125, 185, 203, 263, 288, 307
CviQI GTAC 1 cut(s) 300
DpnI GATC 3 cut(s) 15, 54, 146
DpnII GATC 3 cut(s) 13, 52, 144
DriI GACNNNNNGTC 1 cut(s) 354
Eam1105I GACNNNNNGTC 1 cut(s) 354
Eco47I GGWCC 1 cut(s) 32
EcoNI CCTNNNNNAGG 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 167
FaeI CATG 5 cut(s) 40, 202, 278, 306, 340
FatI CATG 5 cut(s) 36, 198, 274, 302, 336
Fnu4HI GCNGC 2 cut(s) 244, 286
FokI GGATG 1 cut(s) 174
Fsp4HI GCNGC 2 cut(s) 244, 286
FspBI CTAG 2 cut(s) 186, 308
GluI GCNGC 2 cut(s) 244, 286
HaeIII GGCC 1 cut(s) 288
Hin1II CATG 5 cut(s) 40, 202, 278, 306, 340
HinfI GANTC 1 cut(s) 40
HphI GGTGA 1 cut(s) 197
Hpy188I TCNGA 1 cut(s) 360
HpyAV CCTTC 3 cut(s) 95, 311, 326
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 4 cut(s) 59, 165, 170, 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
Hsp92II CATG 5 cut(s) 40, 202, 278, 306, 340
Kzo9I GATC 3 cut(s) 13, 52, 144
LpnPI CCDG 3 cut(s) 63, 162, 243
Lsp1109I GCAGC 1 cut(s) 255
LweI GCATC 1 cut(s) 152
MaeI CTAG 2 cut(s) 186, 308
MaeIII GTNAC 2 cut(s) 68, 88
MalI GATC 3 cut(s) 15, 54, 146
MboI GATC 3 cut(s) 13, 52, 144
MflI RGATCY 2 cut(s) 13, 144
MluCI AATT 2 cut(s) 129, 265
MlyI GAGTC 1 cut(s) 34
MmeI TCCRAC 4 cut(s) 294, 309, 326, 338
MnlI CCTC 3 cut(s) 54, 136, 261
Mph1103I ATGCAT 1 cut(s) 167
Mva1269I GAATGC 1 cut(s) 246
MwoI GCNNNNNNNGC 1 cut(s) 182
NdeII GATC 3 cut(s) 13, 52, 144
NlaIII CATG 5 cut(s) 40, 202, 278, 306, 340
NlaIV GGNNCC 2 cut(s) 15, 34
NmuCI GTSAC 2 cut(s) 68, 88
NsiI ATGCAT 1 cut(s) 167
NspI RCATGY 1 cut(s) 340
PctI GAATGC 1 cut(s) 246
PkrI GCNGC 2 cut(s) 245, 287
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 32
PsiI TTATAA 1 cut(s) 134
Psp5II RGGWCCY 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 15, 34
PspPI GGNCC 1 cut(s) 32
PspPPI RGGWCCY 1 cut(s) 32
PsuI RGATCY 2 cut(s) 13, 144
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SatI GCNGC 2 cut(s) 244, 286
Sau3AI GATC 3 cut(s) 13, 52, 144
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 1 cut(s) 34
SetI ASST 5 cut(s) 52, 68, 187, 210, 322
SfaNI GCATC 1 cut(s) 152
SinI GGWCC 1 cut(s) 32
Sse9I AATT 2 cut(s) 129, 265
SsiI CCGC 1 cut(s) 285
SspMI CTAG 2 cut(s) 186, 308
TaaI ACNGT 1 cut(s) 236
TasI AATT 2 cut(s) 129, 265
TauI GCSGC 1 cut(s) 288
TseFI GTSAC 2 cut(s) 68, 88
TseI GCWGC 1 cut(s) 243
Tsp45I GTSAC 2 cut(s) 68, 88
VpaK11BI GGWCC 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 293
XceI RCATGY 1 cut(s) 340
XspI CTAG 2 cut(s) 186, 308
Zsp2I ATGCAT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.