Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005523.1

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Forward (+)

79150 .. 80161

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005523.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atgtccgtcgcgttttttctctactaccaccgagtcaagcaccaatcggagactcagaaacttgtgaatggcggaggaagcagctcgcagtggttcaccaacgattttagagcggcgccttcgagcttcgtctatattggcaccgtcgaacagagccacaactctacgagtagcgacgccatgggaggagcaacgccggaagagacgacccgtccagatcttgtcagactggagccactcgccgcacttgccaacgattccagagcggcgccttcgagcttcctctatattggcaccgtcgaacagagccacaactccacgagtagcgacgccatgggaggagcaacgccggaagtgaatcggtcgctgtatcggaaactcaacagattggatcactggagttcggatcctcgagtaggatctcgcagcggtccttgcaggagacgacccgtccagatcttgtcagactggagccactcgccgcacttgtacccgccgaacatcgaccgcggcgggattttgcacacggcgacctcgcgcacaaccagcagcgtgtgctcgaactactcctcctcgtccttgaacggcatcgttttggaccttattagattccggtcatcaaatgtggtggctgtggaaacgtgggttgcttcaaatgtcaaaacattctctgtgctattattatgggtggtggtggtggtggggactggggaggctgagatggaaggtgacggggctagggatgaggagcaggcattatgggatttatgtcaagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

259

Amino Acids

28.33

Weight (kDa)

6.05

Isoelectric Point (pI)

53.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	115, 140, 268, 293
AccBSI	CCGCTC	2 cut(s)	113, 266
AccII	CGCG	3 cut(s)	11, 510, 538
AclWI	GGATC	4 cut(s)	399, 401, 414, 427
AcyI	GRCGYC	4 cut(s)	116, 177, 269, 330
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	1 cut(s)	416
AgsI	TTSAA	2 cut(s)	583, 654
AhdI	GACNNNNNGTC	2 cut(s)	210, 449
AloI	GAACNNNNNNTCC	2 cut(s)	554, 586
AluBI	AGCT	3 cut(s)	84, 126, 279
AluI	AGCT	3 cut(s)	84, 126, 279
Alw21I	GWGCWC	1 cut(s)	560
Alw26I	GTCTC	3 cut(s)	44, 197, 436
AlwI	GGATC	4 cut(s)	399, 401, 414, 427
Ama87I	CYCGRG	1 cut(s)	411
ApeKI	GCWGC	3 cut(s)	81, 426, 549
AspLEI	GCGC	3 cut(s)	118, 271, 540
AspS9I	GGNCC	2 cut(s)	431, 598
AsuHPI	GGTGA	2 cut(s)	88, 740
AvaI	CYCGRG	1 cut(s)	411
AvaII	GGWCC	2 cut(s)	431, 598
BamHI	GGATCC	1 cut(s)	406
BanI	GGYRCC	4 cut(s)	115, 140, 268, 293
BauI	CACGAG	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	560
BbvI	GCAGC	3 cut(s)	93, 438, 561
BccI	CCATC	1 cut(s)	715
BceAI	ACGGC	2 cut(s)	543, 601
BcoDI	GTCTC	3 cut(s)	44, 197, 436
BfaI	CTAG	1 cut(s)	738
BfoI	RGCGCY	2 cut(s)	119, 272
BglII	AGATCT	2 cut(s)	217, 456
BisI	GCNGC	8 cut(s)	82, 114, 243, 267, 427, 482, 511, 550
BlsI	GCNGC	8 cut(s)	83, 115, 244, 268, 428, 483, 512, 551
Bme18I	GGWCC	2 cut(s)	431, 598
BmeRI	GACNNNNNGTC	2 cut(s)	210, 449
BmeT110I	CYCGRG	1 cut(s)	411
BmgT120I	GGNCC	2 cut(s)	431, 598
BmiI	GGNNCC	7 cut(s)	117, 142, 234, 270, 295, 408, 473
BmrI	ACTGGG	1 cut(s)	717
BmsI	GCATC	1 cut(s)	597
BmuI	ACTGGG	1 cut(s)	717
BpmI	CTGGAG	3 cut(s)	251, 418, 490
BsaHI	GRCGYC	4 cut(s)	116, 177, 269, 330
BsaJI	CCNNGG	3 cut(s)	180, 333, 508
BsaWI	WCCGGW	1 cut(s)	612
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	4 cut(s)	234, 401, 473, 712
BseDI	CCNNGG	3 cut(s)	180, 333, 508
BseGI	GGATG	1 cut(s)	748
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMII	CTCAG	2 cut(s)	68, 708
BseNI	ACTGG	4 cut(s)	234, 401, 473, 712
BseRI	GAGGAG	5 cut(s)	201, 354, 559, 562, 761
BseXI	GCAGC	3 cut(s)	93, 438, 561
Bsh1236I	CGCG	3 cut(s)	11, 510, 538
Bsh1285I	CGRYCG	2 cut(s)	365, 508
BshNI	GGYRCC	4 cut(s)	115, 140, 268, 293
BsiEI	CGRYCG	2 cut(s)	365, 508
BsiHKAI	GWGCWC	1 cut(s)	560
BsiHKCI	CYCGRG	1 cut(s)	411
BsiSI	CCGG	3 cut(s)	197, 350, 613
BslFI	GGGAC	1 cut(s)	718
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmAI	GTCTC	3 cut(s)	44, 197, 436
BsmBI	CGTCTC	2 cut(s)	197, 436
BsmFI	GGGAC	1 cut(s)	718
BsoBI	CYCGRG	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	560
Bsp143I	GATC	5 cut(s)	217, 391, 406, 419, 456
Bsp19I	CCATGG	2 cut(s)	180, 333
BspCNI	CTCAG	2 cut(s)	67, 709
BspFNI	CGCG	3 cut(s)	11, 510, 538
BspLI	GGNNCC	7 cut(s)	117, 142, 234, 270, 295, 408, 473
BspPI	GGATC	4 cut(s)	399, 401, 414, 427
BspT107I	GGYRCC	4 cut(s)	115, 140, 268, 293
BsrBI	CCGCTC	2 cut(s)	113, 266
BsrI	ACTGG	4 cut(s)	234, 401, 473, 712
BssECI	CCNNGG	3 cut(s)	180, 333, 508
BssMI	GATC	5 cut(s)	217, 391, 406, 419, 456
BssNI	GRCGYC	4 cut(s)	116, 177, 269, 330
BssSI	CACGAG	1 cut(s)	319
BssT1I	CCWWGG	2 cut(s)	180, 333
Bst2BI	CACGAG	1 cut(s)	319
Bst4CI	ACNGT	2 cut(s)	145, 298
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	4 cut(s)	116, 177, 269, 330
BstAPI	GCANNNNNTGC	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	86, 753
BstDEI	CTNAG	2 cut(s)	54, 717
BstDSI	CCRYGG	3 cut(s)	180, 333, 508
BstENI	CCTNNNNNAGG	1 cut(s)	414
BstF5I	GGATG	1 cut(s)	748
BstFNI	CGCG	3 cut(s)	11, 510, 538
BstH2I	RGCGCY	2 cut(s)	119, 272
BstHHI	GCGC	3 cut(s)	118, 271, 540
BstKTI	GATC	5 cut(s)	220, 394, 409, 422, 459
BstMAI	GTCTC	3 cut(s)	44, 197, 436
BstMBI	GATC	5 cut(s)	217, 391, 406, 419, 456
BstMCI	CGRYCG	2 cut(s)	365, 508
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 248, 435, 546, 555
BstUI	CGCG	3 cut(s)	11, 510, 538
BstV1I	GCAGC	3 cut(s)	93, 438, 561
BstX2I	RGATCY	4 cut(s)	217, 406, 419, 456
BstYI	RGATCY	4 cut(s)	217, 406, 419, 456
BtgI	CCRYGG	3 cut(s)	180, 333, 508
BtsCI	GGATG	1 cut(s)	748
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	2 cut(s)	95, 394
Cac8I	GCNNGC	2 cut(s)	86, 753
CfoI	GCGC	3 cut(s)	118, 271, 540
Cfr13I	GGNCC	2 cut(s)	431, 598
Cfr42I	CCGCGG	1 cut(s)	511
CseI	GACGC	2 cut(s)	185, 338
Csp6I	GTAC	1 cut(s)	490
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	2 cut(s)	181, 334
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	2 cut(s)	54, 717
DinI	GGCGCC	2 cut(s)	117, 270
DpnI	GATC	5 cut(s)	219, 393, 408, 421, 458
DpnII	GATC	5 cut(s)	217, 391, 406, 419, 456
DriI	GACNNNNNGTC	2 cut(s)	210, 449
Eam1104I	CTCTTC	1 cut(s)	195
Eam1105I	GACNNNNNGTC	2 cut(s)	210, 449
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	87
Eco130I	CCWWGG	2 cut(s)	180, 333
Eco47I	GGWCC	2 cut(s)	431, 598
Eco88I	CYCGRG	1 cut(s)	411
EcoNI	CCTNNNNNAGG	1 cut(s)	414
EcoT14I	CCWWGG	2 cut(s)	180, 333
EgeI	GGCGCC	2 cut(s)	117, 270
EheI	GGCGCC	2 cut(s)	117, 270
ErhI	CCWWGG	2 cut(s)	180, 333
Esp3I	CGTCTC	2 cut(s)	197, 436
FaeI	CATG	2 cut(s)	184, 337
FaiI	YATR	7 cut(s)	135, 182, 288, 335, 685, 760, 769
FaqI	GGGAC	1 cut(s)	718
FatI	CATG	2 cut(s)	180, 333
FauI	CCCGC	2 cut(s)	501, 506
Fnu4HI	GCNGC	8 cut(s)	82, 114, 243, 267, 427, 482, 511, 550
FokI	GGATG	1 cut(s)	755
Fsp4HI	GCNGC	8 cut(s)	82, 114, 243, 267, 427, 482, 511, 550
FspBI	CTAG	1 cut(s)	738
GlaI	GCGC	3 cut(s)	117, 270, 539
GluI	GCNGC	8 cut(s)	82, 114, 243, 267, 427, 482, 511, 550
GsuI	CTGGAG	3 cut(s)	251, 418, 490
HaeII	RGCGCY	2 cut(s)	119, 272
HapII	CCGG	3 cut(s)	197, 350, 613
HgaI	GACGC	2 cut(s)	185, 338
HhaI	GCGC	3 cut(s)	118, 271, 540
Hin1I	GRCGYC	4 cut(s)	116, 177, 269, 330
Hin1II	CATG	2 cut(s)	184, 337
Hin6I	GCGC	3 cut(s)	116, 269, 538
HinP1I	GCGC	3 cut(s)	116, 269, 538
HinfI	GANTC	5 cut(s)	33, 52, 257, 358, 609
HpaII	CCGG	3 cut(s)	197, 350, 613
HphI	GGTGA	2 cut(s)	88, 740
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	6 cut(s)	49, 57, 227, 375, 406, 466
Hpy188III	TCNNGA	3 cut(s)	215, 261, 454
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	5 cut(s)	11, 149, 179, 302, 332
HpyAV	CCTTC	3 cut(s)	129, 282, 719
HpyCH4III	ACNGT	2 cut(s)	145, 298
HpyCH4IV	ACGT	1 cut(s)	641
HpyCH4V	TGCA	2 cut(s)	438, 523
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 248, 435, 546, 555
HpyF3I	CTNAG	2 cut(s)	54, 717
HpySE526I	ACGT	1 cut(s)	641
Hsp92I	GRCGYC	4 cut(s)	116, 177, 269, 330
Hsp92II	CATG	2 cut(s)	184, 337
HspAI	GCGC	3 cut(s)	116, 269, 538
KasI	GGCGCC	2 cut(s)	115, 268
KspI	CCGCGG	1 cut(s)	511
Kzo9I	GATC	5 cut(s)	217, 391, 406, 419, 456
LmnI	GCTCC	5 cut(s)	188, 232, 341, 471, 748
Lsp1109I	GCAGC	3 cut(s)	93, 438, 561
LweI	GCATC	1 cut(s)	597
MaeI	CTAG	1 cut(s)	738
MaeII	ACGT	1 cut(s)	641
MaeIII	GTNAC	1 cut(s)	728
MalI	GATC	5 cut(s)	219, 393, 408, 421, 458
MbiI	CCGCTC	2 cut(s)	113, 266
MboI	GATC	5 cut(s)	217, 391, 406, 419, 456
MboII	GAAGA	1 cut(s)	212
MflI	RGATCY	4 cut(s)	217, 406, 419, 456
MhlI	GDGCHC	1 cut(s)	560
Mly113I	GGCGCC	2 cut(s)	116, 269
MlyI	GAGTC	2 cut(s)	42, 46
MspA1I	CMGCKG	2 cut(s)	429, 510
MspI	CCGG	3 cut(s)	197, 350, 613
MvnI	CGCG	3 cut(s)	11, 510, 538
MwoI	GCNNNNNNNGC	5 cut(s)	78, 248, 435, 546, 555
NarI	GGCGCC	2 cut(s)	116, 269
NcoI	CCATGG	2 cut(s)	180, 333
NdeII	GATC	5 cut(s)	217, 391, 406, 419, 456
NlaIII	CATG	2 cut(s)	184, 337
NlaIV	GGNNCC	7 cut(s)	117, 142, 234, 270, 295, 408, 473
NmuCI	GTSAC	1 cut(s)	728
PaeR7I	CTCGAG	1 cut(s)	411
PfeI	GAWTC	3 cut(s)	257, 358, 609
PkrI	GCNGC	8 cut(s)	83, 115, 244, 268, 428, 483, 512, 551
PleI	GAGTC	2 cut(s)	41, 46
PluTI	GGCGCC	2 cut(s)	119, 272
PpsI	GAGTC	2 cut(s)	41, 46
PspN4I	GGNNCC	7 cut(s)	117, 142, 234, 270, 295, 408, 473
PspPI	GGNCC	2 cut(s)	431, 598
PspXI	VCTCGAGB	1 cut(s)	411
PsuI	RGATCY	4 cut(s)	217, 406, 419, 456
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
SacII	CCGCGG	1 cut(s)	511
SatI	GCNGC	8 cut(s)	82, 114, 243, 267, 427, 482, 511, 550
Sau3AI	GATC	5 cut(s)	217, 391, 406, 419, 456
Sau96I	GGNCC	2 cut(s)	431, 598
SchI	GAGTC	2 cut(s)	42, 46
SduI	GDGCHC	1 cut(s)	560
SetI	ASST	7 cut(s)	86, 128, 281, 536, 603, 644, 730
SfaNI	GCATC	1 cut(s)	597
SfoI	GGCGCC	2 cut(s)	117, 270
Sfr274I	CTCGAG	1 cut(s)	411
Sfr303I	CCGCGG	1 cut(s)	511
SgrBI	CCGCGG	1 cut(s)	511
SinI	GGWCC	2 cut(s)	431, 598
SlaI	CTCGAG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
SspDI	GGCGCC	2 cut(s)	115, 268
SspMI	CTAG	1 cut(s)	738
StyI	CCWWGG	2 cut(s)	180, 333
TaaI	ACNGT	2 cut(s)	145, 298
TaiI	ACGT	1 cut(s)	644
TaqI	TCGA	7 cut(s)	122, 147, 275, 300, 412, 504, 560
TaqII	GACCGA	1 cut(s)	351
TauI	GCSGC	5 cut(s)	116, 245, 269, 484, 513
TfiI	GAWTC	3 cut(s)	257, 358, 609
TscAI	CASTG	2 cut(s)	95, 401
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	3 cut(s)	81, 426, 549
Tsp45I	GTSAC	1 cut(s)	728
TspRI	CASTG	2 cut(s)	95, 401
VpaK11BI	GGWCC	2 cut(s)	431, 598
XagI	CCTNNNNNAGG	1 cut(s)	414
XhoI	CTCGAG	1 cut(s)	411
XspI	CTAG	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.