Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004755.1

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Reverse (-)

152034 .. 152396

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004755.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

atgtccgtcggaatcatcatgcttgaaatgctgtccgcgctcacgttttttctctattgccaccgagtcaagcatcaatcggagactcagaaactcgttaatggcggagggagcagctcgcagtggttcgccgacaattccagagctgcgccttcgagcttcctctataacggcaccttagagcagagccacaattccacgagtagcgaagccatgagcggagttctgaaaactcaacagattggatcggtgcaggctgagttccgagttgcatccactttcgacgattgcgaagccgccgccgcctcagaacctcgattcgccgccgatgacgtcttgagttcttcctatccaccgccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

120

Amino Acids

12.92

Weight (kDa)

4.95

Isoelectric Point (pI)

54.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	336
AccB1I	GGYRCC	1 cut(s)	173
AccBSI	CCGCTC	1 cut(s)	219
AccII	CGCG	1 cut(s)	38
AciI	CCGC	8 cut(s)	36, 105, 219, 297, 300, 303, 324, 356
AclWI	GGATC	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	333
AgsI	TTSAA	1 cut(s)	26
AluBI	AGCT	3 cut(s)	117, 146, 159
AluI	AGCT	3 cut(s)	117, 146, 159
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	253
ApeKI	GCWGC	2 cut(s)	114, 146
AspLEI	GCGC	2 cut(s)	40, 151
BanI	GGYRCC	1 cut(s)	173
BauI	CACGAG	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	126, 133
BceAI	ACGGC	1 cut(s)	187
BcoDI	GTCTC	1 cut(s)	77
BisI	GCNGC	6 cut(s)	115, 147, 297, 300, 303, 324
BlsI	GCNGC	6 cut(s)	116, 148, 298, 301, 304, 325
BmiI	GGNNCC	1 cut(s)	175
BmsI	GCATC	2 cut(s)	82, 281
BpuEI	CTTGAG	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	333
BseGI	GGATG	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	101, 249, 321
BseXI	GCAGC	2 cut(s)	126, 133
BsgI	GTGCAG	1 cut(s)	272
Bsh1236I	CGCG	1 cut(s)	38
BshNI	GGYRCC	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	245
BspACI	CCGC	8 cut(s)	36, 105, 219, 297, 300, 303, 324, 356
BspCNI	CTCAG	3 cut(s)	100, 250, 320
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	1 cut(s)	175
BspPI	GGATC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	173
BsrBI	CCGCTC	1 cut(s)	219
BssMI	GATC	1 cut(s)	245
BssNI	GRCGYC	1 cut(s)	333
BssSI	CACGAG	1 cut(s)	199
Bst2BI	CACGAG	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	333
BstC8I	GCNNGC	2 cut(s)	119, 255
BstDEI	CTNAG	4 cut(s)	87, 178, 258, 307
BstF5I	GGATG	1 cut(s)	272
BstFNI	CGCG	1 cut(s)	38
BstHHI	GCGC	2 cut(s)	40, 151
BstKTI	GATC	1 cut(s)	248
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 37, 111, 302
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	126, 133
BtsCI	GGATG	1 cut(s)	272
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	119, 255
CfoI	GCGC	2 cut(s)	40, 151
CviAII	CATG	3 cut(s)	19, 214, 360
CviJI	RGCY	7 cut(s)	117, 146, 159, 189, 212, 257, 296
CviKI_1	RGCY	7 cut(s)	117, 146, 159, 189, 212, 257, 296
DdeI	CTNAG	4 cut(s)	87, 178, 258, 307
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	120
FaeI	CATG	3 cut(s)	22, 217, 363
FaiI	YATR	4 cut(s)	20, 168, 215, 361
FatI	CATG	3 cut(s)	18, 213, 359
Fnu4HI	GCNGC	6 cut(s)	115, 147, 297, 300, 303, 324
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	6 cut(s)	115, 147, 297, 300, 303, 324
GlaI	GCGC	2 cut(s)	39, 150
GluI	GCNGC	6 cut(s)	115, 147, 297, 300, 303, 324
HhaI	GCGC	2 cut(s)	40, 151
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	3 cut(s)	22, 217, 363
Hin6I	GCGC	2 cut(s)	38, 149
HinP1I	GCGC	2 cut(s)	38, 149
HinfI	GANTC	4 cut(s)	12, 66, 85, 318
Hpy188I	TCNGA	6 cut(s)	11, 82, 90, 228, 266, 310
Hpy188III	TCNNGA	2 cut(s)	141, 337
Hpy99I	CGWCG	2 cut(s)	11, 287
HpyAV	CCTTC	1 cut(s)	162
HpyCH4IV	ACGT	2 cut(s)	44, 333
HpyCH4V	TGCA	2 cut(s)	253, 272
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 37, 111, 302
HpyF3I	CTNAG	4 cut(s)	87, 178, 258, 307
HpySE526I	ACGT	2 cut(s)	44, 333
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	22, 217, 363
HspAI	GCGC	2 cut(s)	38, 149
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	2 cut(s)	154, 239
Lsp1109I	GCAGC	2 cut(s)	126, 133
LweI	GCATC	2 cut(s)	82, 281
MaeII	ACGT	2 cut(s)	44, 333
MalI	GATC	1 cut(s)	247
MbiI	CCGCTC	1 cut(s)	219
MboI	GATC	1 cut(s)	245
MboII	GAAGA	1 cut(s)	336
MluCI	AATT	2 cut(s)	136, 193
MlyI	GAGTC	2 cut(s)	75, 79
MnlI	CCTC	4 cut(s)	101, 173, 316, 324
MseI	TTAA	1 cut(s)	99
MslI	CAYNNNNRTG	1 cut(s)	358
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	4 cut(s)	28, 37, 111, 302
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	3 cut(s)	22, 217, 363
NlaIV	GGNNCC	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PfeI	GAWTC	2 cut(s)	12, 318
PkrI	GCNGC	6 cut(s)	116, 148, 298, 301, 304, 325
PleI	GAGTC	2 cut(s)	74, 79
PpsI	GAGTC	2 cut(s)	74, 79
PspN4I	GGNNCC	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	358
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	6 cut(s)	115, 147, 297, 300, 303, 324
Sau3AI	GATC	1 cut(s)	245
SchI	GAGTC	2 cut(s)	75, 79
SetI	ASST	7 cut(s)	47, 119, 148, 161, 179, 316, 336
SfaNI	GCATC	2 cut(s)	82, 281
SmiMI	CAYNNNNRTG	1 cut(s)	358
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	2 cut(s)	136, 193
SsiI	CCGC	8 cut(s)	36, 105, 219, 297, 300, 303, 324, 356
TaiI	ACGT	2 cut(s)	47, 336
TaqI	TCGA	3 cut(s)	155, 282, 316
TasI	AATT	2 cut(s)	136, 193
TauI	GCSGC	4 cut(s)	299, 302, 305, 326
TfiI	GAWTC	2 cut(s)	12, 318
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	2 cut(s)	114, 146
TspRI	CASTG	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.