RchiOBHm_Chr3g0494941

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000565
Physical Location & Seq
Reverse (-)
44217754 .. 44218213
460 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45741

Sequence Viewer

Length: 294 bp
ATGGTGCCTCTTGATACGAGTTTACAACTAGAAGTCTATTCGATTTCTCTTTTATCTAGAATCTCTTCTTTTTTGCTGCTGGGGGCTTCCTATTTGCTGATTTCGCTTTTGTTGTTCACTCTTTTCCTGTTGCTGTTGCTGCTCTCCGGTTTTGTTGTTCGTTCTGCATGCATCTATTGGCTTTTCTTTGCCTATTTGGTTCTTCATATTTTTTGTTCAAATCCTTTTGATTTTGGTTATTTGCATAATTGGTTTGTCTTATATGCATATGGTGGATGTTTGAGCATAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

11.1

Weight (kDa)

5.42

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AgsI TTSAA 1 cut(s) 219
ApeKI GCWGC 2 cut(s) 76, 139
Asp700I GAANNNNTTC 1 cut(s) 64
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 2 cut(s) 63, 126
BfaI CTAG 2 cut(s) 29, 57
BisI GCNGC 2 cut(s) 77, 140
BlsI GCNGC 2 cut(s) 78, 141
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 146
BseGI GGATG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 63, 126
BseYI CCCAGC 1 cut(s) 79
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 6
BspT107I GGYRCC 1 cut(s) 4
Bst6I CTCTTC 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 169
BstF5I GGATG 1 cut(s) 281
BstMWI GCNNNNNNNGC 2 cut(s) 103, 139
BstNSI RCATGY 1 cut(s) 171
BstV1I GCAGC 2 cut(s) 63, 126
BtsCI GGATG 1 cut(s) 281
Cac8I GCNNGC 1 cut(s) 169
CviAII CATG 1 cut(s) 168
CviJI RGCY 2 cut(s) 86, 181
CviKI_1 RGCY 2 cut(s) 86, 181
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
EcoT22I ATGCAT 2 cut(s) 173, 268
FaeI CATG 1 cut(s) 171
FaiI YATR 8 cut(s) 169, 207, 246, 262, 264, 268, 270, 287
FatI CATG 1 cut(s) 167
FauNDI CATATG 1 cut(s) 268
Fnu4HI GCNGC 2 cut(s) 77, 140
FokI GGATG 1 cut(s) 288
Fsp4HI GCNGC 2 cut(s) 77, 140
FspBI CTAG 2 cut(s) 29, 57
GluI GCNGC 2 cut(s) 77, 140
GsaI CCCAGC 1 cut(s) 83
HapII CCGG 1 cut(s) 147
Hin1II CATG 1 cut(s) 171
HinfI GANTC 1 cut(s) 60
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 2 cut(s) 23, 117
Hpy188III TCNNGA 2 cut(s) 11, 57
Hpy8I GTNNAC 2 cut(s) 23, 117
HpyCH4V TGCA 4 cut(s) 167, 171, 244, 266
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 139
Hsp92II CATG 1 cut(s) 171
LpnPI CCDG 3 cut(s) 65, 140, 160
Lsp1109I GCAGC 2 cut(s) 63, 126
LweI GCATC 1 cut(s) 180
MaeI CTAG 2 cut(s) 29, 57
MboII GAAGA 2 cut(s) 57, 194
MluCI AATT 1 cut(s) 247
MnlI CCTC 1 cut(s) 18
Mph1103I ATGCAT 2 cut(s) 173, 268
MroXI GAANNNNTTC 1 cut(s) 64
MspI CCGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 103, 139
NdeI CATATG 1 cut(s) 268
NlaIII CATG 1 cut(s) 171
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 2 cut(s) 173, 268
NspI RCATGY 1 cut(s) 171
PaeI GCATGC 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 60
PkrI GCNGC 2 cut(s) 78, 141
PspFI CCCAGC 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 6
SatI GCNGC 2 cut(s) 77, 140
SfaNI GCATC 1 cut(s) 180
SgeI CNNG 8 cut(s) 23, 30, 41, 69, 92, 139, 159, 180
SphI GCATGC 1 cut(s) 171
Sse9I AATT 1 cut(s) 247
SspMI CTAG 2 cut(s) 29, 57
TaqI TCGA 1 cut(s) 41
TasI AATT 1 cut(s) 247
TfiI GAWTC 1 cut(s) 60
TseI GCWGC 2 cut(s) 76, 139
TspDTI ATGAA 1 cut(s) 194
XbaI TCTAGA 1 cut(s) 56
XceI RCATGY 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 64
XspI CTAG 2 cut(s) 29, 57
Zsp2I ATGCAT 2 cut(s) 173, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.