Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Reverse (-)

91509755 .. 91509919

Gene Structure 165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG700700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGAGCGGAGCAACGCAGGAAGTGAACCGGTCGTCGTACCGGAAACTCAACTCGATCAAGAGATCGGATAGATATAGGCCGACTCCCGGGTTTGCAGCCACTTCTGCTGATCGCAAAGCCGCCGCGGCCTTAGAACCTAATTTGCCGTCGCCAATGACGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

54

Amino Acids

5.86

Weight (kDa)

10.51

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	161
AccBSI	CCGCTC	1 cut(s)	6
AccII	CGCG	1 cut(s)	125
AciI	CCGC	4 cut(s)	6, 120, 123, 125
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgeI	ACCGGT	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	86
AoxI	GGCC	2 cut(s)	77, 126
ApeKI	GCWGC	1 cut(s)	95
AsiGI	ACCGGT	1 cut(s)	27
AsuC2I	CCSGG	2 cut(s)	87, 88
AvaI	CYCGRG	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	107
BceAI	ACGGC	1 cut(s)	130
BcnI	CCSGG	2 cut(s)	87, 88
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	4 cut(s)	96, 120, 123, 126
BlsI	GCNGC	4 cut(s)	97, 121, 124, 127
Bme1390I	CCNGG	2 cut(s)	87, 88
BmeT110I	CYCGRG	1 cut(s)	86
BmrFI	CCNGG	2 cut(s)	87, 88
BpuMI	CCSGG	2 cut(s)	87, 88
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	86, 123
BsaWI	WCCGGW	2 cut(s)	27, 39
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	86, 123
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	107
Bsh1236I	CGCG	1 cut(s)	125
Bsh1285I	CGRYCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	79, 128
BshTI	ACCGGT	1 cut(s)	27
BsiEI	CGRYCG	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	86
BsiSI	CCGG	3 cut(s)	28, 40, 87
BslI	CCNNNNNNNGG	1 cut(s)	86
BsnI	GGCC	2 cut(s)	79, 128
BsoBI	CYCGRG	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	54, 62, 109
BspACI	CCGC	4 cut(s)	6, 120, 123, 125
BspANI	GGCC	2 cut(s)	79, 128
BspFNI	CGCG	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	6
BsrFI	RCCGGY	1 cut(s)	27
BssAI	RCCGGY	1 cut(s)	27
BssECI	CCNNGG	2 cut(s)	86, 123
BssMI	GATC	3 cut(s)	54, 62, 109
BssNI	GRCGYC	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	130
BstDSI	CCRYGG	1 cut(s)	123
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	3 cut(s)	57, 65, 112
BstMBI	GATC	3 cut(s)	54, 62, 109
BstMCI	CGRYCG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 125
BstSCI	CCNGG	2 cut(s)	85, 86
BstUI	CGCG	1 cut(s)	125
BstV1I	GCAGC	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	79, 128
BtgI	CCRYGG	1 cut(s)	123
Cfr10I	RCCGGY	1 cut(s)	27
Cfr42I	CCGCGG	1 cut(s)	126
Cfr9I	CCCGGG	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	37
CspAI	ACCGGT	1 cut(s)	27
CviJI	RGCY	4 cut(s)	79, 98, 119, 128
CviKI_1	RGCY	4 cut(s)	79, 98, 119, 128
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	3 cut(s)	56, 64, 111
DpnII	GATC	3 cut(s)	54, 62, 109
Eco88I	CYCGRG	1 cut(s)	86
FaiI	YATR	1 cut(s)	75
Fnu4HI	GCNGC	4 cut(s)	96, 120, 123, 126
Fsp4HI	GCNGC	4 cut(s)	96, 120, 123, 126
GluI	GCNGC	4 cut(s)	96, 120, 123, 126
HaeIII	GGCC	2 cut(s)	79, 128
HapII	CCGG	3 cut(s)	28, 40, 87
Hin1I	GRCGYC	1 cut(s)	158
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	3 cut(s)	28, 40, 87
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	58, 162
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	2 cut(s)	37, 151
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 125
HpyF3I	CTNAG	1 cut(s)	130
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	158
KspI	CCGCGG	1 cut(s)	126
Kzo9I	GATC	3 cut(s)	54, 62, 109
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	4 cut(s)	2, 41, 53, 100
Lsp1109I	GCAGC	1 cut(s)	107
MaeII	ACGT	1 cut(s)	158
MalI	GATC	3 cut(s)	56, 64, 111
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	3 cut(s)	54, 62, 109
MluCI	AATT	1 cut(s)	139
MlyI	GAGTC	1 cut(s)	76
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	3 cut(s)	28, 40, 87
MspR9I	CCNGG	2 cut(s)	87, 88
MvnI	CGCG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	104, 125
NciI	CCSGG	2 cut(s)	87, 88
NdeII	GATC	3 cut(s)	54, 62, 109
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PinAI	ACCGGT	1 cut(s)	27
PkrI	GCNGC	4 cut(s)	97, 121, 124, 127
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SacII	CCGCGG	1 cut(s)	126
SatI	GCNGC	4 cut(s)	96, 120, 123, 126
Sau3AI	GATC	3 cut(s)	54, 62, 109
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	87, 88
SetI	ASST	2 cut(s)	139, 161
Sfr303I	CCGCGG	1 cut(s)	126
SgeI	CNNG	9 cut(s)	29, 40, 52, 64, 70, 98, 99, 100, 136
SgrBI	CCGCGG	1 cut(s)	126
SmaI	CCCGGG	1 cut(s)	88
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	4 cut(s)	6, 120, 123, 125
StyD4I	CCNGG	2 cut(s)	85, 86
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	53
TasI	AATT	1 cut(s)	139
TauI	GCSGC	3 cut(s)	122, 125, 128
TseI	GCWGC	1 cut(s)	95
TspMI	CCCGGG	1 cut(s)	86
XmaI	CCCGGG	1 cut(s)	86
ZraI	GACGTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.