Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Reverse (-)

21070247 .. 21078711

Gene Structure 8465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00016960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGGAACCCATGAACACAAGACCCGTCCGACCACACTCATCGCACACCGGCGAGGCCCAAAGGCCCGCACAAGCATGGCAGCGCAGCCGGACGAGCAATAAAGCAAAGGGGGAGAAGGACAGAATAGATCATATAAGCTCAGCATCTTCAAGTGTAAACTCATGTCCTCCTCCAAAACCAAAGGGAAAGAATGCAAGTGATGAAGTTGTGGAAATGATTGAAGATGAATCTGAACATTCTGGTTCTGAAGACTCAGAAACAATTAAGCACCCATTGGAGACTCCGAAACTCGTTAATGTCAGAGGGAGCAGCTCGCAGCTGTTCACCGACAATTCCAGAGCGGCGCCATCAAGCTTCCTCTATATCGGCACCGTCGATCCGAGCCACAAATCCACGAGTAGAAACGCCATGAGCGGAGCGACTGCGGAAGTGAACCGGTTGTTGTACTGGAAACTCAACTCGATCAAGAGATCGGATTGGTACAGGTCGAGTCCCGAGTTGCAGTCACTTCTCCAGATCCCGAATTTGCTGCCGCCTCAGAACCTCGATTCTTTGTCACCTGTGACATCTTGCCGCCGCCAGCAGTTTCTTAAACTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

201

Amino Acids

22.36

Weight (kDa)

8.55

Isoelectric Point (pI)

70.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	346, 371
AccBSI	CCGCTC	2 cut(s)	344, 417
AciI	CCGC	7 cut(s)	69, 344, 417, 428, 536, 577, 580
AclWI	GGATC	2 cut(s)	374, 514
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	270
AcyI	GRCGYC	1 cut(s)	347
AfaI	GTAC	2 cut(s)	449, 485
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	2 cut(s)	153, 224
AluBI	AGCT	4 cut(s)	141, 315, 322, 357
AluI	AGCT	4 cut(s)	141, 315, 322, 357
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	2 cut(s)	374, 514
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	2 cut(s)	57, 65
ApeKI	GCWGC	5 cut(s)	82, 87, 312, 319, 532
ApoI	RAATTY	1 cut(s)	526
AsiGI	ACCGGT	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	87, 349
AspS9I	GGNCC	2 cut(s)	58, 66
AsuHPI	GGTGA	2 cut(s)	319, 552
AvaI	CYCGRG	1 cut(s)	497
BanI	GGYRCC	2 cut(s)	346, 371
BauI	CACGAG	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	258
BbvI	GCAGC	5 cut(s)	94, 99, 324, 331, 519
BccI	CCATC	1 cut(s)	358
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BcoDI	GTCTC	1 cut(s)	275
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	9 cut(s)	83, 88, 313, 320, 345, 533, 536, 577, 580
BlpI	GCTNAGC	1 cut(s)	142
BlsI	GCNGC	9 cut(s)	84, 89, 314, 321, 346, 534, 537, 578, 581
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	2 cut(s)	58, 66
BmiI	GGNNCC	3 cut(s)	9, 348, 373
BmsI	GCATC	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	500
Bpu1102I	GCTNAGC	1 cut(s)	142
BsaHI	GRCGYC	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	438
Bse118I	RCCGGY	2 cut(s)	50, 438
Bse1I	ACTGG	1 cut(s)	455
BseMII	CTCAG	3 cut(s)	156, 270, 554
BseNI	ACTGG	1 cut(s)	455
BseRI	GAGGAG	1 cut(s)	162
BseXI	GCAGC	5 cut(s)	94, 99, 324, 331, 519
BshFI	GGCC	2 cut(s)	59, 67
BshNI	GGYRCC	2 cut(s)	346, 371
BshTI	ACCGGT	1 cut(s)	438
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	3 cut(s)	51, 91, 439
BslFI	GGGAC	1 cut(s)	480
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	2 cut(s)	59, 67
BsoBI	CYCGRG	1 cut(s)	497
Bsp143I	GATC	5 cut(s)	130, 379, 465, 473, 519
Bsp1720I	GCTNAGC	1 cut(s)	142
BspACI	CCGC	7 cut(s)	69, 344, 417, 428, 536, 577, 580
BspANI	GGCC	2 cut(s)	59, 67
BspCNI	CTCAG	3 cut(s)	155, 269, 553
BspLI	GGNNCC	3 cut(s)	9, 348, 373
BspPI	GGATC	2 cut(s)	374, 514
BspT107I	GGYRCC	2 cut(s)	346, 371
BsrBI	CCGCTC	2 cut(s)	344, 417
BsrFI	RCCGGY	2 cut(s)	50, 438
BsrI	ACTGG	1 cut(s)	455
BssAI	RCCGGY	2 cut(s)	50, 438
BssMI	GATC	5 cut(s)	130, 379, 465, 473, 519
BssNI	GRCGYC	1 cut(s)	347
BssSI	CACGAG	1 cut(s)	397
Bst2BI	CACGAG	1 cut(s)	397
Bst4CI	ACNGT	1 cut(s)	376
BstACI	GRCGYC	1 cut(s)	347
BstC8I	GCNNGC	3 cut(s)	69, 317, 584
BstDEI	CTNAG	3 cut(s)	142, 256, 540
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	2 cut(s)	87, 349
BstKTI	GATC	5 cut(s)	133, 382, 468, 476, 522
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	5 cut(s)	130, 379, 465, 473, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstV1I	GCAGC	5 cut(s)	94, 99, 324, 331, 519
BstV2I	GAAGAC	1 cut(s)	258
BstX2I	RGATCY	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	519
BsuRI	GGCC	2 cut(s)	59, 67
BtgZI	GCGATG	1 cut(s)	27
Cac8I	GCNNGC	3 cut(s)	69, 317, 584
CfoI	GCGC	2 cut(s)	87, 349
Cfr10I	RCCGGY	2 cut(s)	50, 438
Cfr13I	GGNCC	2 cut(s)	58, 66
Csp6I	GTAC	2 cut(s)	448, 484
CspAI	ACCGGT	1 cut(s)	438
CviAII	CATG	4 cut(s)	13, 78, 165, 412
CviJI	RGCY	8 cut(s)	59, 67, 90, 141, 315, 322, 357, 387
CviKI_1	RGCY	8 cut(s)	59, 67, 90, 141, 315, 322, 357, 387
CviQI	GTAC	2 cut(s)	448, 484
DdeI	CTNAG	3 cut(s)	142, 256, 540
DinI	GGCGCC	1 cut(s)	348
DpnI	GATC	5 cut(s)	132, 381, 467, 475, 521
DpnII	GATC	5 cut(s)	130, 379, 465, 473, 519
Eco57I	CTGAAG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	497
EgeI	GGCGCC	1 cut(s)	348
EheI	GGCGCC	1 cut(s)	348
FaeI	CATG	4 cut(s)	16, 81, 168, 415
FaiI	YATR	7 cut(s)	14, 79, 135, 137, 166, 366, 413
FaqI	GGGAC	1 cut(s)	480
FatI	CATG	4 cut(s)	12, 77, 164, 411
FauI	CCCGC	1 cut(s)	76
Fnu4HI	GCNGC	9 cut(s)	83, 88, 313, 320, 345, 533, 536, 577, 580
Fsp4HI	GCNGC	9 cut(s)	83, 88, 313, 320, 345, 533, 536, 577, 580
GlaI	GCGC	2 cut(s)	86, 348
GluI	GCNGC	9 cut(s)	83, 88, 313, 320, 345, 533, 536, 577, 580
GsuI	CTGGAG	1 cut(s)	500
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	2 cut(s)	59, 67
HapII	CCGG	3 cut(s)	51, 91, 439
HhaI	GCGC	2 cut(s)	87, 349
Hin1I	GRCGYC	1 cut(s)	347
Hin1II	CATG	4 cut(s)	16, 81, 168, 415
Hin6I	GCGC	2 cut(s)	85, 347
HinP1I	GCGC	2 cut(s)	85, 347
HindIII	AAGCTT	1 cut(s)	355
HinfI	GANTC	5 cut(s)	230, 254, 283, 493, 551
HpaII	CCGG	3 cut(s)	51, 91, 439
HphI	GGTGA	2 cut(s)	319, 552
Hpy166II	GTNNAC	3 cut(s)	160, 327, 436
Hpy188I	TCNGA	9 cut(s)	32, 235, 250, 259, 288, 305, 384, 478, 543
Hpy188III	TCNNGA	5 cut(s)	339, 469, 497, 517, 523
Hpy8I	GTNNAC	3 cut(s)	160, 327, 436
Hpy99I	CGWCG	1 cut(s)	380
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	376
HpyCH4V	TGCA	2 cut(s)	197, 505
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	3 cut(s)	142, 256, 540
Hsp92I	GRCGYC	1 cut(s)	347
Hsp92II	CATG	4 cut(s)	16, 81, 168, 415
HspAI	GCGC	2 cut(s)	85, 347
KasI	GGCGCC	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	130, 379, 465, 473, 519
LmnI	GCTCC	2 cut(s)	309, 419
Lsp1109I	GCAGC	5 cut(s)	94, 99, 324, 331, 519
LweI	GCATC	1 cut(s)	155
MaeIII	GTNAC	3 cut(s)	507, 558, 565
MalI	GATC	5 cut(s)	132, 381, 467, 475, 521
MbiI	CCGCTC	2 cut(s)	344, 417
MboI	GATC	5 cut(s)	130, 379, 465, 473, 519
MboII	GAAGA	3 cut(s)	141, 236, 263
MflI	RGATCY	1 cut(s)	519
MluCI	AATT	3 cut(s)	264, 334, 526
Mly113I	GGCGCC	1 cut(s)	347
MlyI	GAGTC	3 cut(s)	248, 277, 502
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	49, 180, 183, 299, 371, 549, 557
MseI	TTAA	3 cut(s)	267, 297, 594
MslI	CAYNNNNRTG	1 cut(s)	76
MspA1I	CMGCKG	1 cut(s)	322
MspI	CCGG	3 cut(s)	51, 91, 439
Mva1269I	GAATGC	1 cut(s)	199
MwoI	GCNNNNNNNGC	1 cut(s)	96
NarI	GGCGCC	1 cut(s)	347
NdeII	GATC	5 cut(s)	130, 379, 465, 473, 519
NlaIII	CATG	4 cut(s)	16, 81, 168, 415
NlaIV	GGNNCC	3 cut(s)	9, 348, 373
NmuCI	GTSAC	3 cut(s)	507, 558, 565
PcsI	WCGNNNNNNNCGW	1 cut(s)	375
PctI	GAATGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	230, 551
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	9 cut(s)	84, 89, 314, 321, 346, 534, 537, 578, 581
PleI	GAGTC	3 cut(s)	248, 277, 501
PluTI	GGCGCC	1 cut(s)	350
PpsI	GAGTC	3 cut(s)	248, 277, 501
PspN4I	GGNNCC	3 cut(s)	9, 348, 373
PspPI	GGNCC	2 cut(s)	58, 66
PsuI	RGATCY	1 cut(s)	519
PvuII	CAGCTG	1 cut(s)	322
RsaI	GTAC	2 cut(s)	449, 485
RsaNI	GTAC	2 cut(s)	448, 484
RseI	CAYNNNNRTG	1 cut(s)	76
SaqAI	TTAA	3 cut(s)	267, 297, 594
SatI	GCNGC	9 cut(s)	83, 88, 313, 320, 345, 533, 536, 577, 580
Sau3AI	GATC	5 cut(s)	130, 379, 465, 473, 519
Sau96I	GGNCC	2 cut(s)	58, 66
SchI	GAGTC	3 cut(s)	248, 277, 502
SetI	ASST	7 cut(s)	143, 317, 324, 359, 491, 549, 565
SfaNI	GCATC	1 cut(s)	155
SfoI	GGCGCC	1 cut(s)	348
SgrAI	CRCCGGYG	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	76
Sse9I	AATT	3 cut(s)	264, 334, 526
SsiI	CCGC	7 cut(s)	69, 344, 417, 428, 536, 577, 580
SspDI	GGCGCC	1 cut(s)	346
TaaI	ACNGT	1 cut(s)	376
TaqI	TCGA	4 cut(s)	378, 464, 491, 549
TasI	AATT	3 cut(s)	264, 334, 526
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	4 cut(s)	347, 538, 579, 582
TfiI	GAWTC	2 cut(s)	230, 551
Tru1I	TTAA	3 cut(s)	267, 297, 594
Tru9I	TTAA	3 cut(s)	267, 297, 594
TseFI	GTSAC	3 cut(s)	507, 558, 565
TseI	GCWGC	5 cut(s)	82, 87, 312, 319, 532
Tsp45I	GTSAC	3 cut(s)	507, 558, 565
TspDTI	ATGAA	3 cut(s)	29, 219, 243
XapI	RAATTY	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.