Rroxscaffold_7G00204100

Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template-dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
53169892 .. 53172897
3006 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00204100.1

Sequence Viewer

Length: 459 bp
ATGAGACATATCATGGGTTCAATGGTTAGTGAGGCAGTAAGCTGTGACGAAGCATTTTTAGATGTCACATACTTGGAAGGGGTAGATATGGATATGTTAGCCTCAATTATAATACAAGAGATCTTTGAGACTATTGGATGCATTGCAAGTGCTGGCATAGCTAGAAATATGCTCATGGCTCACCTTACAACAAGAACTGCTAAACCAGACGGTCAATGCAGCATTCCTCCCAAAAGGGGGCATGATTATTTATGTGAACTTCCCATCAAGACGCTTCTAGGAATAGGACACATTTTAGAGGAGAAGTTGAAGATGCGAAATGTTTTGACGTGTGGACAGTTGTGCATGATTCCTAAGCCCTGCAATGTGGTTTGCAGTAGCTATTTTTATGCTGGTGGATGTGTATGGTTGGCACGTATATCTTTGGCTATCCTATGTTCCGCTTTTGAATGCATTTGA

Protein Analysis

152

Amino Acids

16.65

Weight (kDa)

5.75

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IMS PF00817 6 - 64 5.9e-08 impB/mucB/samB family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000565)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
AciI CCGC 1 cut(s) 441
AfiI CCNNNNNNNGG 2 cut(s) 236, 237
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 3 cut(s) 21, 310, 449
AjiI CACGTC 1 cut(s) 330
AluBI AGCT 3 cut(s) 42, 161, 381
AluI AGCT 3 cut(s) 42, 161, 381
Alw26I GTCTC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 173
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 272
BcoDI GTCTC 1 cut(s) 122
BfaI CTAG 2 cut(s) 162, 278
BglII AGATCT 1 cut(s) 120
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 330
BmsI GCATC 2 cut(s) 128, 303
Bpu10I CCTNAGC 1 cut(s) 354
BsaAI YACGTR 1 cut(s) 416
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 237
Bse3DI GCAATG 2 cut(s) 141, 370
BseGI GGATG 2 cut(s) 143, 404
BseLI CCNNNNNNNGG 2 cut(s) 236, 237
BseMI GCAATG 2 cut(s) 141, 370
BseRI GAGGAG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 236, 237
BsmAI GTCTC 1 cut(s) 122
BsmI GAATGC 2 cut(s) 222, 455
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 1 cut(s) 441
BsrDI GCAATG 2 cut(s) 141, 370
BssMI GATC 1 cut(s) 120
Bst4CI ACNGT 2 cut(s) 212, 339
BstBAI YACGTR 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 354
BstF5I GGATG 2 cut(s) 143, 404
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 120
BstYI RGATCY 1 cut(s) 120
BtrI CACGTC 1 cut(s) 330
BtsCI GGATG 2 cut(s) 143, 404
Cac8I GCNNGC 1 cut(s) 154
CseI GACGC 1 cut(s) 280
CviAII CATG 4 cut(s) 13, 175, 242, 346
CviJI RGCY 7 cut(s) 42, 101, 161, 179, 358, 381, 428
CviKI_1 RGCY 7 cut(s) 42, 101, 161, 179, 358, 381, 428
DdeI CTNAG 1 cut(s) 354
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
EcoT22I ATGCAT 2 cut(s) 143, 455
FaeI CATG 4 cut(s) 16, 178, 245, 349
FatI CATG 4 cut(s) 12, 174, 241, 345
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 2 cut(s) 150, 411
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 2 cut(s) 162, 278
GluI GCNGC 1 cut(s) 220
HgaI GACGC 1 cut(s) 280
Hin1II CATG 4 cut(s) 16, 178, 245, 349
HinfI GANTC 1 cut(s) 349
HphI GGTGA 1 cut(s) 173
Hpy166II GTNNAC 2 cut(s) 257, 335
Hpy188III TCNNGA 1 cut(s) 268
Hpy8I GTNNAC 2 cut(s) 257, 335
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 2 cut(s) 212, 339
HpyCH4IV ACGT 2 cut(s) 329, 415
HpyCH4V TGCA 7 cut(s) 141, 146, 219, 345, 363, 375, 453
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 2 cut(s) 329, 415
Hsp92II CATG 4 cut(s) 16, 178, 245, 349
Kzo9I GATC 1 cut(s) 120
LpnPI CCDG 4 cut(s) 138, 219, 373, 378
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 2 cut(s) 128, 303
MaeI CTAG 2 cut(s) 162, 278
MaeII ACGT 2 cut(s) 329, 415
MaeIII GTNAC 2 cut(s) 44, 64
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 322
MflI RGATCY 1 cut(s) 120
MluCI AATT 1 cut(s) 105
MnlI CCTC 4 cut(s) 25, 112, 237, 292
Mph1103I ATGCAT 2 cut(s) 143, 455
Mva1269I GAATGC 2 cut(s) 222, 455
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeII GATC 1 cut(s) 120
NlaIII CATG 4 cut(s) 16, 178, 245, 349
NmuCI GTSAC 2 cut(s) 44, 64
NsiI ATGCAT 2 cut(s) 143, 455
PctI GAATGC 2 cut(s) 222, 455
PfeI GAWTC 1 cut(s) 349
PkrI GCNGC 1 cut(s) 221
Ppu21I YACGTR 1 cut(s) 416
PsiI TTATAA 1 cut(s) 110
PsuI RGATCY 1 cut(s) 120
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 1 cut(s) 120
SetI ASST 6 cut(s) 44, 163, 186, 332, 383, 418
SfaNI GCATC 2 cut(s) 128, 303
Sse9I AATT 1 cut(s) 105
SsiI CCGC 1 cut(s) 441
SspMI CTAG 2 cut(s) 162, 278
TaaI ACNGT 2 cut(s) 212, 339
TaiI ACGT 2 cut(s) 332, 418
TasI AATT 1 cut(s) 105
TfiI GAWTC 1 cut(s) 349
TseFI GTSAC 2 cut(s) 44, 64
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 2 cut(s) 44, 64
XspI CTAG 2 cut(s) 162, 278
Zsp2I ATGCAT 2 cut(s) 143, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.