RchiOBHm_Chr6g0271971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000565
Physical Location & Seq
Reverse (-)
32001933 .. 32002175
243 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24396

Sequence Viewer

Length: 243 bp
ATGCCATTGTCTATATTTTGCAGTATTAATGAATTGATACCTCTTGATACGAGTTTACAACTGGAAGTCTATTCGATTTCTCTTTTGTCTAGAATCTATTCTTTTTTGCTGCTGGGGGCTTCCTATTTGCTGATTTCGGTGAGTAGTTTGTGTTCTATTTTGTATTGGAATGATATTTTTTTTTGTTTTGATTTTGGAAGATCCAGGTCCAATCGATTTTTTTTAAAAAAAATTTTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.3

Weight (kDa)

7.69

Isoelectric Point (pI)

36.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 231
AjnI CCWGG 1 cut(s) 203
AlwI GGATC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 109
ApoI RAATTY 1 cut(s) 231
AseI ATTAAT 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 97
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 151
AvaII GGWCC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 96
BciT130I CCWGG 1 cut(s) 205
BfaI CTAG 1 cut(s) 90
BisI GCNGC 1 cut(s) 110
BlsI GCNGC 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 205
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 205
Bsa29I ATCGAT 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 205
BseCI ATCGAT 1 cut(s) 214
BseNI ACTGG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 96
BseYI CCCAGC 1 cut(s) 112
BshVI ATCGAT 1 cut(s) 214
Bsp143I GATC 1 cut(s) 200
BspDI ATCGAT 1 cut(s) 214
BspPI GGATC 1 cut(s) 195
BsrI ACTGG 1 cut(s) 66
BssMI GATC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 205
BstKTI GATC 1 cut(s) 203
BstMBI GATC 1 cut(s) 200
BstNI CCWGG 1 cut(s) 205
BstSCI CCNGG 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 214
BsuTUI ATCGAT 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 207
ClaI ATCGAT 1 cut(s) 214
CviJI RGCY 1 cut(s) 119
CviKI_1 RGCY 1 cut(s) 119
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
DraI TTTAAA 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 203
FaiI YATR 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 110
FspBI CTAG 1 cut(s) 90
GluI GCNGC 1 cut(s) 110
GsaI CCCAGC 1 cut(s) 116
HinfI GANTC 1 cut(s) 93
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 56
Hpy188III TCNNGA 2 cut(s) 44, 90
Hpy8I GTNNAC 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 21
Kzo9I GATC 1 cut(s) 200
LpnPI CCDG 4 cut(s) 47, 98, 190, 217
Lsp1109I GCAGC 1 cut(s) 96
MaeI CTAG 1 cut(s) 90
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 1 cut(s) 210
MflI RGATCY 1 cut(s) 200
MluCI AATT 2 cut(s) 32, 231
MnlI CCTC 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 97
MseI TTAA 2 cut(s) 27, 224
MspR9I CCNGG 1 cut(s) 205
MvaI CCWGG 1 cut(s) 205
NdeII GATC 1 cut(s) 200
PdmI GAANNNNTTC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 93
PkrI GCNGC 1 cut(s) 111
PshBI ATTAAT 1 cut(s) 27
Psp6I CCWGG 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 112
PspGI CCWGG 1 cut(s) 203
PspPI GGNCC 1 cut(s) 207
PsrI GAACNNNNNNTAC 2 cut(s) 136, 168
PsuI RGATCY 1 cut(s) 200
SaqAI TTAA 2 cut(s) 27, 224
SatI GCNGC 1 cut(s) 110
Sau3AI GATC 1 cut(s) 200
Sau96I GGNCC 1 cut(s) 207
ScrFI CCNGG 1 cut(s) 205
SetI ASST 2 cut(s) 43, 209
SgeI CNNG 7 cut(s) 56, 63, 74, 102, 125, 216, 217
SinI GGWCC 1 cut(s) 207
Sse9I AATT 2 cut(s) 32, 231
SspMI CTAG 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 203
TaqI TCGA 2 cut(s) 74, 214
TasI AATT 2 cut(s) 32, 231
TfiI GAWTC 1 cut(s) 93
Tru1I TTAA 2 cut(s) 27, 224
Tru9I TTAA 2 cut(s) 27, 224
TseI GCWGC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 45
VpaK11BI GGWCC 1 cut(s) 207
VspI ATTAAT 1 cut(s) 27
XapI RAATTY 1 cut(s) 231
XbaI TCTAGA 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 97
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.