Rh1BG094200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000565
Physical Location & Seq
Forward (+)
16425506 .. 16429808
4303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG094200.1

Sequence Viewer

Length: 225 bp
ATGAGCGGAGTTCTGAAAACTCAACAGATCGGATCCGTGCAGGCCGAGTCTCAAGTTGCAGCCACTTCCGACGATTTCGAAGCCGCCACCGCCTCAGAACCTCGATTGGCCGCCGATGACGTACCTGATTTGGAGCTGTATGAGAACAGAGACGAGGCTGCGAAAAGAGAACAGGTTCTTGGCTGCATTGGTCAGGAAATTACTGCGTCATGGAAGGCCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.93

Weight (kDa)

4.17

Isoelectric Point (pI)

34.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 4 cut(s) 6, 84, 90, 111
AclWI GGATC 2 cut(s) 27, 40
AcoI YGGCCR 1 cut(s) 108
AfaI GTAC 1 cut(s) 123
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
Alw26I GTCTC 2 cut(s) 54, 144
AlwI GGATC 2 cut(s) 27, 40
AoxI GGCC 3 cut(s) 42, 108, 216
ApeKI GCWGC 3 cut(s) 59, 158, 183
Asp700I GAANNNNTTC 1 cut(s) 174
AsuII TTCGAA 1 cut(s) 78
BamHI GGATCC 1 cut(s) 32
BbvI GCAGC 3 cut(s) 71, 145, 170
BcoDI GTCTC 2 cut(s) 54, 144
BisI GCNGC 5 cut(s) 60, 84, 111, 159, 184
BlsI GCNGC 5 cut(s) 61, 85, 112, 160, 185
BmiI GGNNCC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 108
BseXI GCAGC 3 cut(s) 71, 145, 170
BsgI GTGCAG 1 cut(s) 59
BshFI GGCC 3 cut(s) 44, 110, 218
BsmAI GTCTC 2 cut(s) 54, 144
BsmBI CGTCTC 1 cut(s) 144
BsnI GGCC 3 cut(s) 44, 110, 218
Bsp119I TTCGAA 1 cut(s) 78
Bsp143I GATC 2 cut(s) 27, 32
BspACI CCGC 4 cut(s) 6, 84, 90, 111
BspANI GGCC 3 cut(s) 44, 110, 218
BspCNI CTCAG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 34
BspPI GGATC 2 cut(s) 27, 40
BspT104I TTCGAA 1 cut(s) 78
BsrBI CCGCTC 1 cut(s) 6
BssMI GATC 2 cut(s) 27, 32
BstBI TTCGAA 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 94
BstKTI GATC 2 cut(s) 30, 35
BstMAI GTCTC 2 cut(s) 54, 144
BstMBI GATC 2 cut(s) 27, 32
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV1I GCAGC 3 cut(s) 71, 145, 170
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuRI GGCC 3 cut(s) 44, 110, 218
Cac8I GCNNGC 1 cut(s) 42
CseI GACGC 1 cut(s) 195
Csp6I GTAC 1 cut(s) 122
CviAII CATG 1 cut(s) 210
CviJI RGCY 8 cut(s) 44, 62, 83, 110, 136, 158, 183, 218
CviKI_1 RGCY 8 cut(s) 44, 62, 83, 110, 136, 158, 183, 218
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 1 cut(s) 94
DpnI GATC 2 cut(s) 29, 34
DpnII GATC 2 cut(s) 27, 32
EaeI YGGCCR 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 1 cut(s) 213
FaiI YATR 2 cut(s) 141, 211
FatI CATG 1 cut(s) 209
Fnu4HI GCNGC 5 cut(s) 60, 84, 111, 159, 184
Fsp4HI GCNGC 5 cut(s) 60, 84, 111, 159, 184
GluI GCNGC 5 cut(s) 60, 84, 111, 159, 184
HaeIII GGCC 3 cut(s) 44, 110, 218
HgaI GACGC 1 cut(s) 195
Hin1II CATG 1 cut(s) 213
HinfI GANTC 1 cut(s) 47
Hpy188I TCNGA 4 cut(s) 15, 32, 70, 97
Hpy188III TCNNGA 1 cut(s) 194
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 3 cut(s) 40, 59, 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 94
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 1 cut(s) 213
Kzo9I GATC 2 cut(s) 27, 32
LmnI GCTCC 1 cut(s) 133
LpnPI CCDG 4 cut(s) 26, 138, 158, 179
Lsp1109I GCAGC 3 cut(s) 71, 145, 170
MaeII ACGT 1 cut(s) 120
MalI GATC 2 cut(s) 29, 34
MbiI CCGCTC 1 cut(s) 6
MboI GATC 2 cut(s) 27, 32
MflI RGATCY 1 cut(s) 32
MluCI AATT 2 cut(s) 198, 220
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 3 cut(s) 103, 111, 148
MroXI GAANNNNTTC 1 cut(s) 174
MseI TTAA 1 cut(s) 223
MwoI GCNNNNNNNGC 1 cut(s) 89
NdeII GATC 2 cut(s) 27, 32
NlaIII CATG 1 cut(s) 213
NlaIV GGNNCC 1 cut(s) 34
NmeAIII GCCGAG 1 cut(s) 70
NspV TTCGAA 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 174
PkrI GCNGC 5 cut(s) 61, 85, 112, 160, 185
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 34
PsuI RGATCY 1 cut(s) 32
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 223
SatI GCNGC 5 cut(s) 60, 84, 111, 159, 184
Sau3AI GATC 2 cut(s) 27, 32
SchI GAGTC 1 cut(s) 56
SetI ASST 5 cut(s) 103, 123, 127, 138, 177
SfuI TTCGAA 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 2 cut(s) 198, 220
SsiI CCGC 4 cut(s) 6, 84, 90, 111
TaiI ACGT 1 cut(s) 123
TaqI TCGA 2 cut(s) 78, 103
TasI AATT 2 cut(s) 198, 220
TauI GCSGC 2 cut(s) 86, 113
Tru1I TTAA 1 cut(s) 223
Tru9I TTAA 1 cut(s) 223
TseI GCWGC 3 cut(s) 59, 158, 183
TspGWI ACGGA 1 cut(s) 25
XmnI GAANNNNTTC 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.