Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006670.1

Orthogroup ID

OG0000565

Physical Location & Seq

Genomic Coordinates Reverse (-)

111547 .. 113368

Gene Structure 1822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006670.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atggaagtaaagagaaggactcagaaactcgttaatgttagagggagtagctcgcagcggttcactgacgattccagagcggcgccatcaagctttctctatatcggcaccatcgatccgagccacaaatccacgagtagcgatgccatgagcggagcgacggcggaagtgaattggttgctgtactggaaactcaactcgatcaagagatcagatcggtacaggtcgagtcccgagttgcaaccacttctccctatcccaaagttgtcaccacctcagaacctcgattcgttgtcgccgatgacctcttgctacctccagcaggttcgtaaacttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0005886 GO:0008092 GO:0009524 GO:0015630 GO:0016020 GO:0030312 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FH2

Protein Analysis

113

Amino Acids

12.77

Weight (kDa)

9.77

Isoelectric Point (pI)

72.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000565)

Species	Orthologous Gene IDs
pyrus_communis	pycom10g08490
rosa_chinensis	RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata	RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora	Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii	Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa	Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha	Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana	Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	313
AccB1I	GGYRCC	2 cut(s)	82, 107
AccBSI	CCGCTC	2 cut(s)	80, 153
AciI	CCGC	4 cut(s)	58, 80, 153, 164
AclWI	GGATC	1 cut(s)	110
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	2 cut(s)	185, 221
AfiI	CCNNNNNNNGG	1 cut(s)	322
AluBI	AGCT	2 cut(s)	51, 93
AluI	AGCT	2 cut(s)	51, 93
AlwI	GGATC	1 cut(s)	110
Ama87I	CYCGRG	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	55
AspLEI	GCGC	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	261
AvaI	CYCGRG	1 cut(s)	233
BanI	GGYRCC	2 cut(s)	82, 107
BauI	CACGAG	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	2 cut(s)	94, 119
BceAI	ACGGC	1 cut(s)	177
BfoI	RGCGCY	1 cut(s)	86
BfuAI	ACCTGC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	56, 81
BlsI	GCNGC	2 cut(s)	57, 82
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	84, 109
BmsI	GCATC	1 cut(s)	133
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	302
Bsa29I	ATCGAT	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	191
BseCI	ATCGAT	1 cut(s)	114
BseLI	CCNNNNNNNGG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	35, 290
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	67
BshNI	GGYRCC	2 cut(s)	82, 107
BshVI	ATCGAT	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	233
BslFI	GGGAC	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	216
BsoBI	CYCGRG	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	115, 201, 209, 214
BspACI	CCGC	4 cut(s)	58, 80, 153, 164
BspCNI	CTCAG	2 cut(s)	34, 289
BspDI	ATCGAT	1 cut(s)	114
BspLI	GGNNCC	2 cut(s)	84, 109
BspMI	ACCTGC	1 cut(s)	313
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	2 cut(s)	82, 107
BsrBI	CCGCTC	2 cut(s)	80, 153
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	4 cut(s)	115, 201, 209, 214
BssNI	GRCGYC	1 cut(s)	83
BssSI	CACGAG	1 cut(s)	133
Bst2BI	CACGAG	1 cut(s)	133
BstACI	GRCGYC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	53
BstDEI	CTNAG	2 cut(s)	21, 276
BstENI	CCTNNNNNAGG	1 cut(s)	320
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	4 cut(s)	118, 204, 212, 217
BstMBI	GATC	4 cut(s)	115, 201, 209, 214
BstV1I	GCAGC	1 cut(s)	67
Bsu15I	ATCGAT	1 cut(s)	114
BsuTUI	ATCGAT	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	63
BveI	ACCTGC	1 cut(s)	313
Cac8I	GCNNGC	1 cut(s)	53
CfoI	GCGC	1 cut(s)	85
ClaI	ATCGAT	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	184, 220
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	3 cut(s)	51, 93, 123
CviKI_1	RGCY	3 cut(s)	51, 93, 123
CviQI	GTAC	2 cut(s)	184, 220
DdeI	CTNAG	2 cut(s)	21, 276
DinI	GGCGCC	1 cut(s)	84
DpnI	GATC	4 cut(s)	117, 203, 211, 216
DpnII	GATC	4 cut(s)	115, 201, 209, 214
EciI	GGCGGA	1 cut(s)	179
Eco88I	CYCGRG	1 cut(s)	233
EcoNI	CCTNNNNNAGG	1 cut(s)	320
EgeI	GGCGCC	1 cut(s)	84
EheI	GGCGCC	1 cut(s)	84
FaeI	CATG	1 cut(s)	151
FaiI	YATR	2 cut(s)	102, 149
FaqI	GGGAC	1 cut(s)	216
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	56, 81
Fsp4HI	GCNGC	2 cut(s)	56, 81
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	2 cut(s)	56, 81
GsuI	CTGGAG	1 cut(s)	302
HaeII	RGCGCY	1 cut(s)	86
HhaI	GCGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	151
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	4 cut(s)	19, 71, 229, 287
HphI	GGTGA	1 cut(s)	261
Hpy166II	GTNNAC	2 cut(s)	63, 332
Hpy188I	TCNGA	4 cut(s)	24, 120, 214, 279
Hpy188III	TCNNGA	3 cut(s)	75, 205, 233
Hpy8I	GTNNAC	2 cut(s)	63, 332
Hpy99I	CGWCG	1 cut(s)	163
HpyAV	CCTTC	1 cut(s)	9
HpyCH4V	TGCA	1 cut(s)	241
HpyF3I	CTNAG	2 cut(s)	21, 276
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	151
HspAI	GCGC	1 cut(s)	83
KasI	GGCGCC	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	115, 201, 209, 214
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	5 cut(s)	88, 172, 208, 308, 332
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	267
MalI	GATC	4 cut(s)	117, 203, 211, 216
MbiI	CCGCTC	2 cut(s)	80, 153
MboI	GATC	4 cut(s)	115, 201, 209, 214
MluCI	AATT	1 cut(s)	172
Mly113I	GGCGCC	1 cut(s)	83
MlyI	GAGTC	2 cut(s)	13, 238
MnlI	CCTC	5 cut(s)	35, 285, 293, 316, 326
MseI	TTAA	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	58
NarI	GGCGCC	1 cut(s)	83
NdeII	GATC	4 cut(s)	115, 201, 209, 214
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	84, 109
NmuCI	GTSAC	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 296
PfeI	GAWTC	2 cut(s)	71, 287
PkrI	GCNGC	2 cut(s)	57, 82
PleI	GAGTC	2 cut(s)	13, 237
PluTI	GGCGCC	1 cut(s)	86
PpsI	GAGTC	2 cut(s)	13, 237
PspN4I	GGNNCC	2 cut(s)	84, 109
RsaI	GTAC	2 cut(s)	185, 221
RsaNI	GTAC	2 cut(s)	184, 220
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	2 cut(s)	56, 81
Sau3AI	GATC	4 cut(s)	115, 201, 209, 214
SchI	GAGTC	2 cut(s)	13, 238
SetI	ASST	8 cut(s)	53, 95, 227, 277, 285, 308, 318, 327
SfaNI	GCATC	1 cut(s)	133
SfoI	GGCGCC	1 cut(s)	84
Sse9I	AATT	1 cut(s)	172
SsiI	CCGC	4 cut(s)	58, 80, 153, 164
SspDI	GGCGCC	1 cut(s)	82
TaqI	TCGA	4 cut(s)	114, 200, 227, 285
TasI	AATT	1 cut(s)	172
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	2 cut(s)	71, 287
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	267
TspRI	CASTG	1 cut(s)	70
XagI	CCTNNNNNAGG	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.