Rw0G009600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00373
OG0000565
Physical Location & Seq
Reverse (-)
76809 .. 77227
419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009600.1

Sequence Viewer

Length: 303 bp
ATGTTCGATTCTGCATCTGCAACCGGAGAGCGTCTCTCTCGCCATTGCGGAACCAGCTCACAAGCAAATTCGAAAGTCCAGAGAGCTTCATCTACGCCTGAAGAGTTGAGATCTTATCAAGGACGATCGATTCAGCTCTCGCAGGATCTGAAGCACCATACAAAGTACGCCCCTATCTTATTTTATCATAGTCGGAATCTGCTTACTTGTAATTTCTGTGATGCATTATTTTTGGGGAAGTGGGTGTTTATTGCACACCAGGTGTTCGATTCAATTCCCCTTAAGCTGTGTTTGGGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.31

Weight (kDa)

9.07

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000565)

Species Orthologous Gene IDs
pyrus_communis pycom10g08490
rosa_chinensis RchiOBHm_Chr1g0329691 RchiOBHm_Chr1g0332621 RchiOBHm_Chr2g0113681 RchiOBHm_Chr3g0494941 RchiOBHm_Chr4g0405101 RchiOBHm_Chr4g0432031 RchiOBHm_Chr6g0256671 RchiOBHm_Chr6g0271971
rosa_laevigata RLG00000000812 RLG00000014208 RLG00000019091 RLG00000023770 RLG00000024432 RLG00000030162
rosa_multiflora Rmu_sc0000173.1_g000039 Rmu_sc0000213.1_g000001 Rmu_sc0000580.1_g000059 Rmu_sc0001084.1_g000007 Rmu_sc0004755.1_g000037 Rmu_sc0005523.1_g000016 Rmu_sc0006670.1_g000025 Rmu_sc0021593.1_g000003
rosa_roxburghii Rroxscaffold_176G00431130 Rroxscaffold_1G00016960 Rroxscaffold_1G00025070 Rroxscaffold_1G00041460 Rroxscaffold_4G00294040 Rroxscaffold_6G00409240 Rroxscaffold_6G00423240 Rroxscaffold_6G00425100 Rroxscaffold_7G00185440 Rroxscaffold_7G00204100
rosa_rugosa Rorug03G0304000 Rorug03G0304000 Rorug06G0059000 Rorug06G0112900
rosa_samantha Rh1AG075200 Rh1AG157000 Rh1AG157100 Rh1AG161600 Rh1BG065800 Rh1BG094200 Rh2AG675300 Rh2BG242500 Rh2BG287600 Rh2BG319100 Rh2BG494800 Rh2BG686600 Rh2CG248000 Rh2CG288100 Rh2CG288200 Rh2CG649800 Rh2DG603100 Rh2DG700700 Rh3AG253500 Rh3BG236900 Rh3CG110600 Rh3CG318000 Rh3DG231400 Rh4CG141900 Rh5BG429900 Rh5CG251900 Rh5CG266000 Rh5CG350700 Rh5DG443300 Rh6AG032600 Rh6AG032700 Rh6BG408900 Rh6CG008400 Rh6DG009300 Rh7AG279000 Rh7BG261100 Rh7CG160900 Rh7CG298200 Rh7CG465100 Rh7CG502800 Rh7DG293900 Rh7DG471100 Rh7DG471300
rosa_wichuraiana Rw0G009600 Rw1G010610 Rw3G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 48
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 1 cut(s) 67
AcuI CTGAAG 2 cut(s) 120, 170
AdeI CACNNNGTG 1 cut(s) 262
AfaI GTAC 1 cut(s) 167
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 1 cut(s) 273
AjnI CCWGG 1 cut(s) 258
AluBI AGCT 4 cut(s) 57, 86, 136, 286
AluI AGCT 4 cut(s) 57, 86, 136, 286
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 153
AlwNI CAGNNNCTG 1 cut(s) 148
ApoI RAATTY 1 cut(s) 67
AsuII TTCGAA 1 cut(s) 71
BciT130I CCWGG 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 38
BfrI CTTAAG 1 cut(s) 281
BglII AGATCT 1 cut(s) 110
Bme1390I CCNGG 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 23, 211
BplI GAGNNNNNCTC 4 cut(s) 18, 50, 20, 52
Bpu14I TTCGAA 1 cut(s) 71
Bsa29I ATCGAT 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 128
BseMI GCAATG 1 cut(s) 43
Bsh1285I CGRYCG 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 128
BsiEI CGRYCG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
Bsp119I TTCGAA 1 cut(s) 71
Bsp143I GATC 3 cut(s) 110, 125, 145
BspACI CCGC 1 cut(s) 48
BspDI ATCGAT 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 52
BspPI GGATC 1 cut(s) 153
BspT104I TTCGAA 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 43
BssMI GATC 3 cut(s) 110, 125, 145
Bst2UI CCWGG 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 96
BstAFI CTTAAG 1 cut(s) 281
BstBI TTCGAA 1 cut(s) 71
BstKTI GATC 3 cut(s) 113, 128, 148
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 3 cut(s) 110, 125, 145
BstMCI CGRYCG 1 cut(s) 128
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 260
BstSCI CCNGG 1 cut(s) 258
BstX2I RGATCY 2 cut(s) 110, 145
BstYI RGATCY 2 cut(s) 110, 145
Bsu15I ATCGAT 1 cut(s) 128
BsuTUI ATCGAT 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 128
CseI GACGC 1 cut(s) 20
CsiI ACCWGGT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 166
CviJI RGCY 4 cut(s) 57, 86, 136, 286
CviKI_1 RGCY 4 cut(s) 57, 86, 136, 286
CviQI GTAC 1 cut(s) 166
DpnI GATC 3 cut(s) 112, 127, 147
DpnII GATC 3 cut(s) 110, 125, 145
DraIII CACNNNGTG 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 120, 170
EcoRII CCWGG 1 cut(s) 258
EcoT22I ATGCAT 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 38
FaiI YATR 2 cut(s) 159, 189
HapII CCGG 1 cut(s) 24
HgaI GACGC 1 cut(s) 20
HinfI GANTC 4 cut(s) 8, 130, 196, 269
HpaII CCGG 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 150, 195
Hpy188III TCNNGA 1 cut(s) 79
HpyCH4V TGCA 4 cut(s) 14, 20, 224, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
Kzo9I GATC 3 cut(s) 110, 125, 145
LpnPI CCDG 7 cut(s) 37, 67, 92, 111, 128, 245, 272
LweI GCATC 2 cut(s) 23, 211
MabI ACCWGGT 1 cut(s) 258
MalI GATC 3 cut(s) 112, 127, 147
MboI GATC 3 cut(s) 110, 125, 145
MboII GAAGA 1 cut(s) 113
MflI RGATCY 2 cut(s) 110, 145
MluCI AATT 3 cut(s) 67, 211, 273
MmeI TCCRAC 1 cut(s) 173
Mph1103I ATGCAT 1 cut(s) 226
MseI TTAA 1 cut(s) 282
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 3 cut(s) 110, 125, 145
NlaIV GGNNCC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 226
NspV TTCGAA 1 cut(s) 71
PfeI GAWTC 4 cut(s) 8, 130, 196, 269
Ple19I CGATCG 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 258
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 52
PstNI CAGNNNCTG 1 cut(s) 148
PsuI RGATCY 2 cut(s) 110, 145
PvuI CGATCG 1 cut(s) 128
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
SaqAI TTAA 1 cut(s) 282
Sau3AI GATC 3 cut(s) 110, 125, 145
ScrFI CCNGG 1 cut(s) 260
SetI ASST 5 cut(s) 59, 88, 138, 264, 288
SexAI ACCWGGT 1 cut(s) 258
SfaNI GCATC 2 cut(s) 23, 211
SfuI TTCGAA 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 3 cut(s) 67, 211, 273
SsiI CCGC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 258
TaqI TCGA 4 cut(s) 6, 71, 128, 267
TasI AATT 3 cut(s) 67, 211, 273
TfiI GAWTC 4 cut(s) 8, 130, 196, 269
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TspDTI ATGAA 1 cut(s) 78
Vha464I CTTAAG 1 cut(s) 281
XapI RAATTY 1 cut(s) 67
Zsp2I ATGCAT 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.