AT1G25270

Nodulin MtN21 EamA-like transporter family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000337
Physical Location & Seq
Forward (+)
8857726 .. 8859909
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G25270.1

Sequence Viewer

Length: 1068 bp
ATGAAGAGTGTAGTTGCAATGGTGGCGGTTCAGTTTATCTTCGCCGGGATGTTCATTTTGTTTAAGATAACGGTCGACGATGGTACGAATCTCAAAGTTCTTGTAGCGTATCGTCTGTCCTTTGCTACTATTTTCATGCTTCCCCTTGCCCTCATCTTCCAAAGGAAGAAGCGGCCAGAATTTACATGGAGGCTGCTCTTACTAGCATTTGTTTCGGGGTTGCTCGGAGCGGCGATACCAAATATTCTCTACTTGCCGGGTATGGCTCGAACATCAGCGACATTTTCAGCTGCAAGCAGCATAATTAGCCCATTGATCACCTTGGTGTTGGGTTTGGTGTTTAGGATGGAGACTCTACGGCTGGGATCGAACGAAGGGAGGGCCAAGCTAGTGGGGACGCTGCTTGGTGCATGTGGAGCCCTCGTGTTTGTATTCTACAAAGGTATTGAGATTCATATCTGGTCAACACACGTTGACTTACTCAAAGGCTCGCATACTGGTCGAGCCACTACGAACCACCACGTCTCAATCTTAGGGGTTCTTATGGTTCTTGGCAGTAACGTTTCCACCTCACTTTGGTTACTATTGCAGGCAAAAATAGGCAAGGAACTTGGAGGACTTTATTGGAACACAAGTTTGATGAATGGGGTGGGAAGTTTGGTGTGCGTGATTATTGCTCTCTGTTCGGATCATGACTGGGAGCAATGGCAATTAGGATGGGATATTAACCTCTTAGCTACGCTTTATTCGGGAATCGTGGTTTCGGGAATGGTCGTGCCTCTTGTTGCATGGTGCATCGCAACAAAAGGACCATTATTTGTTACTGTCTTTAGCCCTATAAGGCTGGTGATCGTAGCCCTAATAGGATCATTTGCTTTAGAGGAACCCCTGCATTTGGGAAGTATAATCGGTGCCATGATAATGGTGGGAGGAGTATACCTAGTGGTATGGTGTAAAATGAAGGAAAAAAAGAGTGCGTCTACGACTTCGGACCATATTGAAACAAATAAGAATAACAAAGAACTGGACCTTGGCAATCTTTCATCAGTAAATAGAGATGTCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

355

Amino Acids

38.58

Weight (kDa)

9.28

Isoelectric Point (pI)

25.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 3 - 143 2.7e-13 EamA-like transporter family
EamA PF00892 178 - 316 1.2e-08 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 911
AccBSI CCGCTC 1 cut(s) 230
AccI GTMKAC 3 cut(s) 75, 936, 980
AciI CCGC 3 cut(s) 26, 172, 230
AclI AACGTT 1 cut(s) 561
AclWI GGATC 3 cut(s) 373, 696, 874
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 1 cut(s) 179
AfaI GTAC 1 cut(s) 85
AfiI CCNNNNNNNGG 2 cut(s) 576, 895
AflIII ACRYGT 1 cut(s) 469
AgsI TTSAA 1 cut(s) 1001
AjiI CACGTC 1 cut(s) 523
AjuI GAANNNNNNNTTGG 2 cut(s) 1014, 1046
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 3 cut(s) 290, 388, 737
AluI AGCT 3 cut(s) 290, 388, 737
Alw26I GTCTC 2 cut(s) 344, 529
AlwI GGATC 3 cut(s) 373, 696, 874
AoxI GGCC 2 cut(s) 173, 381
ApeKI GCWGC 4 cut(s) 193, 290, 297, 400
ApoI RAATTY 1 cut(s) 179
AspS9I GGNCC 4 cut(s) 381, 809, 991, 1027
AsuC2I CCSGG 2 cut(s) 46, 258
AsuHPI GGTGA 2 cut(s) 310, 859
AvaII GGWCC 3 cut(s) 809, 991, 1027
BanI GGYRCC 1 cut(s) 911
BanII GRGCYC 1 cut(s) 421
BauI CACGAG 1 cut(s) 422
BbvI GCAGC 4 cut(s) 180, 277, 309, 387
BccI CCATC 3 cut(s) 74, 340, 711
BceAI ACGGC 1 cut(s) 374
BcgI CGANNNNNNTGC 4 cut(s) 195, 229, 482, 516
BclI TGATCA 1 cut(s) 315
BcnI CCSGG 2 cut(s) 46, 258
BcoDI GTCTC 2 cut(s) 344, 529
BfaI CTAG 3 cut(s) 203, 389, 941
BisI GCNGC 6 cut(s) 173, 194, 231, 291, 298, 401
BlsI GCNGC 6 cut(s) 174, 195, 232, 292, 299, 402
Bme1390I CCNGG 2 cut(s) 46, 258
Bme18I GGWCC 3 cut(s) 809, 991, 1027
BmgBI CACGTC 1 cut(s) 523
BmgT120I GGNCC 4 cut(s) 381, 809, 991, 1027
BmiI GGNNCC 3 cut(s) 418, 885, 913
BmrFI CCNGG 2 cut(s) 46, 258
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 1 cut(s) 804
BmuI ACTGGG 1 cut(s) 706
BpuMI CCSGG 2 cut(s) 46, 258
BsaBI GATNNNNATC 1 cut(s) 455
BsaJI CCNNGG 2 cut(s) 321, 1030
BsaXI ACNNNNNCTCC 2 cut(s) 408, 438
Bsc4I CCNNNNNNNGG 2 cut(s) 576, 895
Bse1I ACTGG 3 cut(s) 502, 701, 1029
Bse3DI GCAATG 2 cut(s) 24, 710
Bse8I GATNNNNATC 1 cut(s) 455
BseDI CCNNGG 2 cut(s) 321, 1030
BseGI GGATG 3 cut(s) 54, 351, 722
BseJI GATNNNNATC 1 cut(s) 455
BseLI CCNNNNNNNGG 2 cut(s) 576, 895
BseMI GCAATG 2 cut(s) 24, 710
BseNI ACTGG 3 cut(s) 502, 701, 1029
BseRI GAGGAG 1 cut(s) 945
BseXI GCAGC 4 cut(s) 180, 277, 309, 387
BseYI CCCAGC 1 cut(s) 361
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 2 cut(s) 175, 383
BshNI GGYRCC 1 cut(s) 911
BsiEI CGRYCG 1 cut(s) 75
BsiSI CCGG 2 cut(s) 45, 257
BslFI GGGAC 2 cut(s) 409, 1046
BslI CCNNNNNNNGG 2 cut(s) 576, 895
BsmAI GTCTC 2 cut(s) 344, 529
BsmBI CGTCTC 1 cut(s) 529
BsmFI GGGAC 2 cut(s) 409, 1046
BsnI GGCC 2 cut(s) 175, 383
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 5 cut(s) 315, 365, 688, 849, 866
BspACI CCGC 3 cut(s) 26, 172, 230
BspANI GGCC 2 cut(s) 175, 383
BspHI TCATGA 1 cut(s) 691
BspLI GGNNCC 3 cut(s) 418, 885, 913
BspPI GGATC 3 cut(s) 373, 696, 874
BspT107I GGYRCC 1 cut(s) 911
BsrBI CCGCTC 1 cut(s) 230
BsrDI GCAATG 2 cut(s) 24, 710
BsrI ACTGG 3 cut(s) 502, 701, 1029
BssECI CCNNGG 2 cut(s) 321, 1030
BssMI GATC 5 cut(s) 315, 365, 688, 849, 866
BssNAI GTATAC 1 cut(s) 937
BssSI CACGAG 1 cut(s) 422
BssT1I CCWWGG 2 cut(s) 321, 1030
Bst1107I GTATAC 1 cut(s) 937
Bst2BI CACGAG 1 cut(s) 422
Bst4CI ACNGT 2 cut(s) 73, 826
BstC8I GCNNGC 3 cut(s) 295, 491, 591
BstDEI CTNAG 2 cut(s) 532, 733
BstF5I GGATG 3 cut(s) 54, 351, 722
BstKTI GATC 5 cut(s) 318, 368, 691, 852, 869
BstMAI GTCTC 2 cut(s) 344, 529
BstMBI GATC 5 cut(s) 315, 365, 688, 849, 866
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 23, 306, 416
BstNSI RCATGY 1 cut(s) 414
BstSCI CCNGG 2 cut(s) 44, 256
BstV1I GCAGC 4 cut(s) 180, 277, 309, 387
BstXI CCANNNNNNTGG 2 cut(s) 391, 922
BstZ17I GTATAC 1 cut(s) 937
BsuRI GGCC 2 cut(s) 175, 383
BtgZI GCGATG 1 cut(s) 781
BtrI CACGTC 1 cut(s) 523
BtsCI GGATG 3 cut(s) 54, 351, 722
Cac8I GCNNGC 3 cut(s) 295, 491, 591
CciI TCATGA 1 cut(s) 691
Cfr13I GGNCC 4 cut(s) 381, 809, 991, 1027
CseI GACGC 2 cut(s) 406, 966
Csp6I GTAC 1 cut(s) 84
CviAII CATG 6 cut(s) 136, 186, 411, 692, 789, 916
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 2 cut(s) 532, 733
DpnI GATC 5 cut(s) 317, 367, 690, 851, 868
DpnII GATC 5 cut(s) 315, 365, 688, 849, 866
EaeI YGGCCR 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 321, 1030
Eco24I GRGCYC 1 cut(s) 421
Eco47I GGWCC 3 cut(s) 809, 991, 1027
EcoT14I CCWWGG 2 cut(s) 321, 1030
EcoT38I GRGCYC 1 cut(s) 421
ErhI CCWWGG 2 cut(s) 321, 1030
Esp3I CGTCTC 1 cut(s) 529
FaeI CATG 6 cut(s) 139, 189, 414, 695, 792, 919
FaqI GGGAC 2 cut(s) 409, 1046
FatI CATG 6 cut(s) 135, 185, 410, 691, 788, 915
FbaI TGATCA 1 cut(s) 315
FblI GTMKAC 3 cut(s) 75, 936, 980
Fnu4HI GCNGC 6 cut(s) 173, 194, 231, 291, 298, 401
FokI GGATG 3 cut(s) 61, 358, 729
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 6 cut(s) 173, 194, 231, 291, 298, 401
FspBI CTAG 3 cut(s) 203, 389, 941
GluI GCNGC 6 cut(s) 173, 194, 231, 291, 298, 401
GsaI CCCAGC 1 cut(s) 365
HaeIII GGCC 2 cut(s) 175, 383
HapII CCGG 2 cut(s) 45, 257
HgaI GACGC 2 cut(s) 406, 966
Hin1II CATG 6 cut(s) 139, 189, 414, 695, 792, 919
HincII GTYRAC 3 cut(s) 76, 465, 475
HindII GTYRAC 3 cut(s) 76, 465, 475
HinfI GANTC 4 cut(s) 88, 352, 451, 753
HpaII CCGG 2 cut(s) 45, 257
HphI GGTGA 2 cut(s) 310, 859
Hpy166II GTNNAC 5 cut(s) 76, 465, 475, 937, 981
Hpy188I TCNGA 3 cut(s) 227, 688, 991
Hpy188III TCNNGA 3 cut(s) 692, 750, 765
Hpy8I GTNNAC 5 cut(s) 76, 465, 475, 937, 981
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 2 cut(s) 368, 955
HpyCH4III ACNGT 2 cut(s) 73, 826
HpyCH4IV ACGT 3 cut(s) 471, 522, 561
HpyCH4V TGCA 7 cut(s) 17, 293, 410, 589, 788, 795, 892
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 306, 416
HpyF3I CTNAG 2 cut(s) 532, 733
HpySE526I ACGT 3 cut(s) 471, 522, 561
Hsp92II CATG 6 cut(s) 139, 189, 414, 695, 792, 919
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 5 cut(s) 315, 365, 688, 849, 866
LmnI GCTCC 3 cut(s) 227, 416, 700
Lsp1109I GCAGC 4 cut(s) 180, 277, 309, 387
LweI GCATC 1 cut(s) 804
MaeI CTAG 3 cut(s) 203, 389, 941
MaeII ACGT 3 cut(s) 471, 522, 561
MaeIII GTNAC 3 cut(s) 557, 579, 820
MalI GATC 5 cut(s) 317, 367, 690, 851, 868
MbiI CCGCTC 1 cut(s) 230
MboI GATC 5 cut(s) 315, 365, 688, 849, 866
MboII GAAGA 4 cut(s) 16, 31, 148, 178
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 3 cut(s) 179, 303, 710
MlyI GAGTC 1 cut(s) 346
MseI TTAA 2 cut(s) 63, 726
MslI CAYNNNNRTG 2 cut(s) 323, 920
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 2 cut(s) 45, 257
MspR9I CCNGG 2 cut(s) 46, 258
MwoI GCNNNNNNNGC 3 cut(s) 23, 306, 416
NciI CCSGG 2 cut(s) 46, 258
NdeII GATC 5 cut(s) 315, 365, 688, 849, 866
NlaIII CATG 6 cut(s) 139, 189, 414, 695, 792, 919
NlaIV GGNNCC 3 cut(s) 418, 885, 913
NspI RCATGY 1 cut(s) 414
OliI CACNNNNGTG 1 cut(s) 323
PagI TCATGA 1 cut(s) 691
PfeI GAWTC 3 cut(s) 88, 451, 753
PkrI GCNGC 6 cut(s) 174, 195, 232, 292, 299, 402
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp1406I AACGTT 1 cut(s) 561
PspFI CCCAGC 1 cut(s) 361
PspN4I GGNNCC 3 cut(s) 418, 885, 913
PspPI GGNCC 4 cut(s) 381, 809, 991, 1027
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
RseI CAYNNNNRTG 2 cut(s) 323, 920
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 63, 726
SatI GCNGC 6 cut(s) 173, 194, 231, 291, 298, 401
Sau3AI GATC 5 cut(s) 315, 365, 688, 849, 866
Sau96I GGNCC 4 cut(s) 381, 809, 991, 1027
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 2 cut(s) 46, 258
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 1 cut(s) 804
SinI GGWCC 3 cut(s) 809, 991, 1027
SmiMI CAYNNNNRTG 2 cut(s) 323, 920
Sse9I AATT 3 cut(s) 179, 303, 710
SsiI CCGC 3 cut(s) 26, 172, 230
SspI AATATT 1 cut(s) 244
SspMI CTAG 3 cut(s) 203, 389, 941
StyD4I CCNGG 2 cut(s) 44, 256
StyI CCWWGG 2 cut(s) 321, 1030
TaaI ACNGT 2 cut(s) 73, 826
TaiI ACGT 3 cut(s) 474, 525, 564
TaqI TCGA 4 cut(s) 75, 268, 368, 502
TasI AATT 3 cut(s) 179, 303, 710
TauI GCSGC 2 cut(s) 175, 233
TfiI GAWTC 3 cut(s) 88, 451, 753
Tru1I TTAA 2 cut(s) 63, 726
Tru9I TTAA 2 cut(s) 63, 726
TseI GCWGC 4 cut(s) 193, 290, 297, 400
TspDTI ATGAA 7 cut(s) 17, 43, 124, 443, 656, 974, 1032
VpaK11BI GGWCC 3 cut(s) 809, 991, 1027
XapI RAATTY 1 cut(s) 179
XceI RCATGY 1 cut(s) 414
XcmI CCANNNNNNNNNTGG 2 cut(s) 183, 922
XmiI GTMKAC 3 cut(s) 75, 936, 980
XspI CTAG 3 cut(s) 203, 389, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.