Rorug07G0224200

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000337
Physical Location & Seq
Reverse (-)
20427415 .. 20428723
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0224200.1

Sequence Viewer

Length: 378 bp
ATGTCGGCTGCGCAAGTGGAACCGCATGACAAGATGAGAAGCAGAGATGTGAATAAGGTGGCTCGGGGAGAGCAGGCTCCTCGGCCTGCTCATGAGTACGGCTCCATCAAATCAGCTCCTCCTAAACCGACACCGACTCCGCCGCCGCGGCCTTCTTCGCCACCACCGAGCTACAAGGAGGAGGTTGAAGACGAACATAACCCAGTTGCGCGGCACTGCTATGCTAGTTACTGGCAGTTCCACAAGTGTATCAAGGACAAGGGCGATGGCGCACCTCAATGTGTGAGGTTTGAGAAAAATTATAAGATTTTGTGCCCTCTTGAGTGGATTGAGAGGTGGGATGAAGATCAAAAGCGTGGAGTGTTAGTGATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

125

Amino Acids

14.37

Weight (kDa)

7.7

Isoelectric Point (pI)

68.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX6B PF02297 70 - 117 1.5e-15 Cytochrome oxidase c subunit VIb
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 303
Acc16I TGCGCA 1 cut(s) 12
AccII CGCG 2 cut(s) 148, 211
AciI CCGC 6 cut(s) 23, 140, 143, 146, 148, 211
AfaI GTAC 1 cut(s) 98
AgsI TTSAA 1 cut(s) 188
AluBI AGCT 2 cut(s) 116, 171
AluI AGCT 2 cut(s) 116, 171
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 2 cut(s) 83, 149
ApeKI GCWGC 1 cut(s) 8
AspLEI GCGC 3 cut(s) 13, 211, 272
AvaI CYCGRG 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 317
BaeI ACNNNNGTAYC 2 cut(s) 232, 265
BbsI GAAGAC 1 cut(s) 195
BccI CCATC 2 cut(s) 113, 260
BceAI ACGGC 1 cut(s) 115
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BfaI CTAG 1 cut(s) 225
BglI GCCNNNNNGGC 1 cut(s) 148
BisI GCNGC 5 cut(s) 9, 143, 146, 149, 212
BlsI GCNGC 5 cut(s) 10, 144, 147, 150, 213
BmeT110I CYCGRG 1 cut(s) 63
BmiI GGNNCC 3 cut(s) 21, 78, 103
BmrI ACTGGG 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 195
BplI GAGNNNNNCTC 2 cut(s) 86, 118
BpuEI CTTGAG 1 cut(s) 341
BsaBI GATNNNNATC 1 cut(s) 345
BsaJI CCNNGG 2 cut(s) 80, 146
BsaXI ACNNNNNCTCC 3 cut(s) 121, 151, 351
Bse1I ACTGG 2 cut(s) 203, 236
Bse8I GATNNNNATC 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 80, 146
BseGI GGATG 1 cut(s) 346
BseJI GATNNNNATC 1 cut(s) 345
BseNI ACTGG 2 cut(s) 203, 236
BseRI GAGGAG 3 cut(s) 69, 108, 194
BseSI GKGCMC 1 cut(s) 317
Bsh1236I CGCG 2 cut(s) 148, 211
BshFI GGCC 2 cut(s) 85, 151
BsiHKCI CYCGRG 1 cut(s) 63
BsnI GGCC 2 cut(s) 85, 151
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 317
Bsp143I GATC 1 cut(s) 346
BspACI CCGC 6 cut(s) 23, 140, 143, 146, 148, 211
BspANI GGCC 2 cut(s) 85, 151
BspFNI CGCG 2 cut(s) 148, 211
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 3 cut(s) 21, 78, 103
BsrI ACTGG 2 cut(s) 203, 236
BssECI CCNNGG 2 cut(s) 80, 146
BssMI GATC 1 cut(s) 346
BstC8I GCNNGC 2 cut(s) 75, 87
BstDSI CCRYGG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 346
BstFNI CGCG 2 cut(s) 148, 211
BstHHI GCGC 3 cut(s) 13, 211, 272
BstKTI GATC 1 cut(s) 349
BstMBI GATC 1 cut(s) 346
BstMWI GCNNNNNNNGC 2 cut(s) 148, 157
BstSLI GKGCMC 1 cut(s) 317
BstUI CGCG 2 cut(s) 148, 211
BstV2I GAAGAC 1 cut(s) 195
BsuRI GGCC 2 cut(s) 85, 151
BtgI CCRYGG 1 cut(s) 146
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 2 cut(s) 75, 87
CciI TCATGA 1 cut(s) 91
CfoI GCGC 3 cut(s) 13, 211, 272
Cfr42I CCGCGG 1 cut(s) 149
Csp6I GTAC 1 cut(s) 97
CviAII CATG 2 cut(s) 26, 92
CviJI RGCY 8 cut(s) 8, 62, 77, 85, 102, 116, 151, 171
CviKI_1 RGCY 8 cut(s) 8, 62, 77, 85, 102, 116, 151, 171
CviQI GTAC 1 cut(s) 97
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
EciI GGCGGA 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 63
FaeI CATG 2 cut(s) 29, 95
FaiI YATR 5 cut(s) 27, 93, 198, 222, 303
FatI CATG 2 cut(s) 25, 91
Fnu4HI GCNGC 5 cut(s) 9, 143, 146, 149, 212
FokI GGATG 1 cut(s) 353
Fsp4HI GCNGC 5 cut(s) 9, 143, 146, 149, 212
FspBI CTAG 1 cut(s) 225
FspI TGCGCA 1 cut(s) 12
GlaI GCGC 3 cut(s) 12, 210, 271
GluI GCNGC 5 cut(s) 9, 143, 146, 149, 212
HaeIII GGCC 2 cut(s) 85, 151
HhaI GCGC 3 cut(s) 13, 211, 272
Hin1II CATG 2 cut(s) 29, 95
Hin6I GCGC 3 cut(s) 11, 209, 270
HinP1I GCGC 3 cut(s) 11, 209, 270
HinfI GANTC 1 cut(s) 136
Hpy188III TCNNGA 2 cut(s) 92, 320
HpyAV CCTTC 1 cut(s) 162
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 157
Hsp92II CATG 2 cut(s) 29, 95
HspAI GCGC 3 cut(s) 11, 209, 270
KspI CCGCGG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 3 cut(s) 82, 107, 121
LpnPI CCDG 4 cut(s) 59, 99, 216, 217
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 227
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 3 cut(s) 147, 200, 356
MhlI GDGCHC 1 cut(s) 317
MluCI AATT 1 cut(s) 298
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 8 cut(s) 90, 129, 172, 175, 279, 285, 327, 327
MslI CAYNNNNRTG 2 cut(s) 219, 277
MspA1I CMGCKG 1 cut(s) 148
MvnI CGCG 2 cut(s) 148, 211
MwoI GCNNNNNNNGC 2 cut(s) 148, 157
NdeII GATC 1 cut(s) 346
NlaIII CATG 2 cut(s) 29, 95
NlaIV GGNNCC 3 cut(s) 21, 78, 103
NmeAIII GCCGAG 1 cut(s) 61
NsbI TGCGCA 1 cut(s) 12
PagI TCATGA 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 164
PkrI GCNGC 5 cut(s) 10, 144, 147, 150, 213
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PsiI TTATAA 1 cut(s) 303
PspN4I GGNNCC 3 cut(s) 21, 78, 103
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 2 cut(s) 219, 277
SacII CCGCGG 1 cut(s) 149
SatI GCNGC 5 cut(s) 9, 143, 146, 149, 212
Sau3AI GATC 1 cut(s) 346
SchI GAGTC 1 cut(s) 130
SduI GDGCHC 1 cut(s) 317
SetI ASST 7 cut(s) 60, 118, 173, 186, 277, 290, 338
Sfr303I CCGCGG 1 cut(s) 149
SgrBI CCGCGG 1 cut(s) 149
SmiMI CAYNNNNRTG 2 cut(s) 219, 277
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 1 cut(s) 298
SsiI CCGC 6 cut(s) 23, 140, 143, 146, 148, 211
SspMI CTAG 1 cut(s) 225
TasI AATT 1 cut(s) 298
TauI GCSGC 4 cut(s) 145, 148, 151, 214
TscAI CASTG 1 cut(s) 221
TseI GCWGC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 357
TspRI CASTG 1 cut(s) 221
XspI CTAG 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.