Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000337

Physical Location & Seq

Genomic Coordinates Forward (+)

20652007 .. 20654230

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0226200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTTTCTGTCTGCAATCACCTTTGTGCCTTTTCATTGTTTTTCTTCTCTTACAAACACTGGGCGGCAAGGCTGCAACCTGTAATGACTGCTTTGTTCAATCTCGAGCAGCTTATTATCCGAATTCTGAAACACAAGGAACAGATAGAGGTGAATGCGGGTTCGGTTCGTTTGGAGCAACAATTAATGGTGGGGATGTGTCAGCAGCCTCTGACCTCTATCGCAAAGGGGTTGGATGTGGTGCTTGTTACCAGGTGAGGTGCACAAACGGCGGCTACTGCTCAGACAAAGGAGTAACTATAGTTATAACAGATTCAGGCAGCAGTGATCACACAGACTTTATCCTCAGCCAACGAGCGTTTGCCCGGATGGCTCAAACAACTGATGCAGCTGCTTCTCTATTATCTCTTGGTATAGTTGATATTGAATACAGACGTGTTTCATGCAGCTACCCCAACAAAAATATCACAATTAAGATCGATGAGAACAGTAACTATCCTTATTATTTGGCTTTTGTACTATGGTACCAACAAGGCAAGAAAGATATCACAGCTGTCCAGCTTTGTGAGACAGAAAACTTTGTCTGTAAGTTACTGGACCGGACTCATGGAGCAGTTTGGACAACTACCTCACCTCCAACTGGACCCCTGCAAATAAGGATGTTATTCAGTGATGATGATGGTGATGAGAATTGGGTTGTTCCAGTAAATAACATACCACAAGACTGGAAAGCTGGACAAACATATGACTCGGGAGTTCAAGTGAACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

257

Amino Acids

28.06

Weight (kDa)

4.79

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	71 - 144	2.7e-12	Lytic transglycolase
Expansin_C	PF01357	156 - 237	5.4e-13	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25270 AT1G68170 AT1G68170
fragaria_vesca	FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica	MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica	Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis	pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis	RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata	RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora	Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii	Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa	Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha	Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana	Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
Acc65I	GGTACC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	525
AciI	CCGC	3 cut(s)	66, 159, 273
AcsI	RAATTY	1 cut(s)	124
AfaI	GTAC	2 cut(s)	519, 527
AfiI	CCNNNNNNNGG	1 cut(s)	641
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	101, 428, 761
AjiI	CACGTC	1 cut(s)	437
AjnI	CCWGG	1 cut(s)	252
AleI	CACNNNNGTG	1 cut(s)	25
AluBI	AGCT	6 cut(s)	113, 392, 450, 554, 562, 734
AluI	AGCT	6 cut(s)	113, 392, 450, 554, 562, 734
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	563
Alw44I	GTGCAC	1 cut(s)	262
AlwNI	CAGNNNCTG	1 cut(s)	212
Ama87I	CYCGRG	2 cut(s)	105, 751
ApaLI	GTGCAC	1 cut(s)	262
ApeKI	GCWGC	7 cut(s)	74, 110, 206, 321, 389, 392, 447
ApoI	RAATTY	1 cut(s)	124
AseI	ATTAAT	1 cut(s)	186
Asp718I	GGTACC	1 cut(s)	525
AspS9I	GGNCC	2 cut(s)	598, 644
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	5 cut(s)	12, 164, 268, 624, 695
AvaI	CYCGRG	2 cut(s)	105, 751
AvaII	GGWCC	2 cut(s)	598, 644
BaeGI	GKGCMC	1 cut(s)	266
BaeI	ACNNNNGTAYC	2 cut(s)	509, 542
BanI	GGYRCC	1 cut(s)	525
Bbv12I	GWGCWC	1 cut(s)	266
BbvCI	CCTCAGC	1 cut(s)	347
BbvI	GCAGC	7 cut(s)	61, 122, 218, 333, 379, 401, 459
BccI	CCATC	2 cut(s)	364, 674
BceAI	ACGGC	1 cut(s)	286
BciT130I	CCWGG	1 cut(s)	254
BclI	TGATCA	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	367
BcoDI	GTCTC	1 cut(s)	563
BfmI	CTRYAG	1 cut(s)	300
BglI	GCCNNNNNGGC	1 cut(s)	371
BisI	GCNGC	9 cut(s)	67, 75, 111, 207, 274, 322, 390, 393, 448
BlsI	GCNGC	9 cut(s)	68, 76, 112, 208, 275, 323, 391, 394, 449
Bme1390I	CCNGG	2 cut(s)	254, 367
Bme18I	GGWCC	2 cut(s)	598, 644
BmeT110I	CYCGRG	2 cut(s)	105, 751
BmgBI	CACGTC	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	598, 644
BmiI	GGNNCC	2 cut(s)	527, 646
BmrFI	CCNGG	2 cut(s)	254, 367
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	1 cut(s)	376
BmuI	ACTGGG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	480
BsaWI	WCCGGW	1 cut(s)	600
BsaXI	ACNNNNNCTCC	3 cut(s)	619, 649, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	641
Bse1I	ACTGG	5 cut(s)	66, 600, 646, 704, 731
BseBI	CCWGG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	480
BseGI	GGATG	4 cut(s)	202, 242, 375, 666
BseLI	CCNNNNNNNGG	1 cut(s)	641
BseMII	CTCAG	2 cut(s)	297, 361
BseNI	ACTGG	5 cut(s)	66, 600, 646, 704, 731
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	7 cut(s)	61, 122, 218, 333, 379, 401, 459
BshNI	GGYRCC	1 cut(s)	525
BshVI	ATCGAT	1 cut(s)	480
BsiHKAI	GWGCWC	1 cut(s)	266
BsiHKCI	CYCGRG	2 cut(s)	105, 751
BsiSI	CCGG	2 cut(s)	367, 601
BslI	CCNNNNNNNGG	1 cut(s)	641
BsmAI	GTCTC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	161
BsoBI	CYCGRG	2 cut(s)	105, 751
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	2 cut(s)	328, 477
BspACI	CCGC	3 cut(s)	66, 159, 273
BspCNI	CTCAG	2 cut(s)	296, 360
BspDI	ATCGAT	1 cut(s)	480
BspLI	GGNNCC	2 cut(s)	527, 646
BspT107I	GGYRCC	1 cut(s)	525
BsrI	ACTGG	5 cut(s)	66, 600, 646, 704, 731
BssMI	GATC	2 cut(s)	328, 477
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	491
BstDEI	CTNAG	2 cut(s)	283, 347
BstF5I	GGATG	4 cut(s)	202, 242, 375, 666
BstKTI	GATC	2 cut(s)	331, 480
BstMAI	GTCTC	1 cut(s)	563
BstMBI	GATC	2 cut(s)	328, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	270, 279, 371
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	252, 365
BstSFI	CTRYAG	1 cut(s)	300
BstSLI	GKGCMC	1 cut(s)	266
BstV1I	GCAGC	7 cut(s)	61, 122, 218, 333, 379, 401, 459
BstXI	CCANNNNNNTGG	1 cut(s)	726
Bsu15I	ATCGAT	1 cut(s)	480
BsuTUI	ATCGAT	1 cut(s)	480
BtrI	CACGTC	1 cut(s)	437
BtsCI	GGATG	4 cut(s)	202, 242, 375, 666
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	3 cut(s)	59, 331, 676
CaiI	CAGNNNCTG	1 cut(s)	212
Cfr13I	GGNCC	2 cut(s)	598, 644
ClaI	ATCGAT	1 cut(s)	480
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	518, 526
CviAII	CATG	2 cut(s)	444, 608
CviQI	GTAC	2 cut(s)	518, 526
DdeI	CTNAG	2 cut(s)	283, 347
DpnI	GATC	2 cut(s)	330, 479
DpnII	GATC	2 cut(s)	328, 477
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	598, 644
Eco88I	CYCGRG	2 cut(s)	105, 751
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	1 cut(s)	252
EcoRV	GATATC	1 cut(s)	547
FaeI	CATG	2 cut(s)	447, 611
FatI	CATG	2 cut(s)	443, 607
FauI	CCCGC	1 cut(s)	152
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	1 cut(s)	328
Fnu4HI	GCNGC	9 cut(s)	67, 75, 111, 207, 274, 322, 390, 393, 448
FokI	GGATG	4 cut(s)	209, 249, 382, 673
Fsp4HI	GCNGC	9 cut(s)	67, 75, 111, 207, 274, 322, 390, 393, 448
GluI	GCNGC	9 cut(s)	67, 75, 111, 207, 274, 322, 390, 393, 448
HapII	CCGG	2 cut(s)	367, 601
Hin1II	CATG	2 cut(s)	447, 611
HinfI	GANTC	3 cut(s)	314, 604, 749
HpaII	CCGG	2 cut(s)	367, 601
HphI	GGTGA	5 cut(s)	12, 164, 268, 624, 695
Hpy166II	GTNNAC	2 cut(s)	264, 766
Hpy188I	TCNGA	4 cut(s)	123, 130, 214, 286
Hpy188III	TCNNGA	2 cut(s)	105, 753
Hpy8I	GTNNAC	2 cut(s)	264, 766
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	6 cut(s)	16, 77, 264, 389, 447, 652
HpyF10VI	GCNNNNNNNGC	3 cut(s)	270, 279, 371
HpyF3I	CTNAG	2 cut(s)	283, 347
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	2 cut(s)	447, 611
KpnI	GGTACC	1 cut(s)	529
Ksp22I	TGATCA	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	328, 477
LmnI	GCTCC	2 cut(s)	176, 611
Lsp1109I	GCAGC	7 cut(s)	61, 122, 218, 333, 379, 401, 459
LweI	GCATC	1 cut(s)	376
MabI	ACCWGGT	1 cut(s)	252
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	4 cut(s)	248, 295, 491, 591
MalI	GATC	2 cut(s)	330, 479
MboI	GATC	2 cut(s)	328, 477
MboII	GAAGA	1 cut(s)	38
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	4 cut(s)	124, 183, 471, 691
MlyI	GAGTC	2 cut(s)	598, 743
MmeI	TCCRAC	2 cut(s)	214, 662
MnlI	CCTC	7 cut(s)	143, 220, 227, 252, 356, 640, 645
MseI	TTAA	2 cut(s)	186, 474
MslI	CAYNNNNRTG	1 cut(s)	25
MspA1I	CMGCKG	2 cut(s)	392, 554
MspI	CCGG	2 cut(s)	367, 601
MspR9I	CCNGG	2 cut(s)	254, 367
Mva1269I	GAATGC	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	3 cut(s)	270, 279, 371
NciI	CCSGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	2 cut(s)	328, 477
NlaIII	CATG	2 cut(s)	447, 611
NlaIV	GGNNCC	2 cut(s)	527, 646
OliI	CACNNNNGTG	1 cut(s)	25
PaeR7I	CTCGAG	1 cut(s)	105
PctI	GAATGC	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	314
PkrI	GCNGC	9 cut(s)	68, 76, 112, 208, 275, 323, 391, 394, 449
PleI	GAGTC	2 cut(s)	598, 743
PpsI	GAGTC	2 cut(s)	598, 743
PshBI	ATTAAT	1 cut(s)	186
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	2 cut(s)	527, 646
PspPI	GGNCC	2 cut(s)	598, 644
PstNI	CAGNNNCTG	1 cut(s)	212
PvuII	CAGCTG	2 cut(s)	392, 554
RsaI	GTAC	2 cut(s)	519, 527
RsaNI	GTAC	2 cut(s)	518, 526
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	186, 474
SatI	GCNGC	9 cut(s)	67, 75, 111, 207, 274, 322, 390, 393, 448
Sau3AI	GATC	2 cut(s)	328, 477
Sau96I	GGNCC	2 cut(s)	598, 644
SchI	GAGTC	2 cut(s)	598, 743
ScrFI	CCNGG	2 cut(s)	254, 367
SduI	GDGCHC	1 cut(s)	266
SexAI	ACCWGGT	1 cut(s)	252
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	300
Sfr274I	CTCGAG	1 cut(s)	105
SinI	GGWCC	2 cut(s)	598, 644
SlaI	CTCGAG	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	4 cut(s)	124, 183, 471, 691
SsiI	CCGC	3 cut(s)	66, 159, 273
StyD4I	CCNGG	2 cut(s)	252, 365
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	106, 480
TasI	AATT	4 cut(s)	124, 183, 471, 691
TatI	WGTACW	1 cut(s)	517
TauI	GCSGC	2 cut(s)	69, 276
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	2 cut(s)	186, 474
Tru9I	TTAA	2 cut(s)	186, 474
TscAI	CASTG	3 cut(s)	66, 331, 676
TseI	GCWGC	7 cut(s)	74, 110, 206, 321, 389, 392, 447
TspDTI	ATGAA	2 cut(s)	25, 432
TspRI	CASTG	3 cut(s)	66, 331, 676
VneI	GTGCAC	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	598, 644
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	124
XhoI	CTCGAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.