RLG00000001850

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
21905211 .. 21907945
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001850

Sequence Viewer

Length: 1176 bp
ATGGGTGGTAGTTGTTTTAATGCTTTGCATGGGTTGAAGCCATTGATGTTAATGCTGGTGGTTCAGTTTACATCTGCTGGAGTCAACTTGTTTTACAAACTGGCCGCTAATGATGGAATGGACATCAGGATTATTATTGCCTATCGCTTCAGTTTTGCCACCGTTTTCCTTGCTCCTATTGCTCTCTTCGTTGAAAGAAAGAGCAGGCCAAAGCTCACTCGGGTGGTACTCCTCCAAGCATTTTTGTCTGGCTTGCTTGGGGGAGCATTGTCACAAAATTTGTACATTGCAAGTTTAGCGTTAACGTCTGCAACATTTGCTCTCGCAATAAGTCAACTCATCCCGGCCATAACTTTTGTTTTGGCCATCTCCTTTGGGTTGGAGAGATTGAATTTAAGGAGCGTAGGGGGGAAGGCAAAGGTGTTGGGAACATTAATGGGAATAGGTGGAGCAATGCTTATGACCTTTTACAAAGGTCTGGAAATCCACTTATGGACCACCCATGTTGACCTTTTGCATGGTAGTCATCAGCAACAACCACACTTGGAGGCAGCAGCTTCGCATGAGTATGCTCATCGTCTGTTAGGTTGTCTTCTGGCTCTGGCCAGCTCCTTGGGTTACGCCTTGTGGCTAATTATTCAGGCTAAGATGGGTGAGAAATACCCTAGTTTTTATTCAAGCGCAGCTCTAATTTCACTTATGGGGTCAATCCAGTCCCTTGTTTTTGCCCTCTGCGTCGACAGGGACTGGAACCATTGGAAGTTGGGTTGGAATATTAGACTTCTAACAGTCTTATACCTGGGGACTGTGGGTACTGGAGTAAGTCTGACATGTACTACACTTTGCATAAGCATGAGAGGGCCTTTGTACGCGTCAGTTTTTGGGCCTTTGGTTCTTGTTCTTGTTGCCCTCGTTGGCTCTTTGGTGTTGGACGAGAAGCTGCACCTCGGAAGTGTGCTAGGAGCGGTTCTAATCGTTGGCGGCTTATACGCTGTTCTGTGGGGAAAGAGCAAAGACATAAAGAAGGTGAATCAATCGGTGCCAACAACAAGCTATGAGGAGGAATCTGCAGGATCTGTAGTTGAAATTGTTTCAATGCCTCGGGATAATAATAAAGGCAATAACTACATGAATGAGACCGTCACAAATAGTCAACACGATCGTATAGAAACCTAG

Protein Analysis

392

Amino Acids

42.33

Weight (kDa)

9.1

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 15 - 155 9.1e-14 EamA-like transporter family
EamA PF00892 195 - 333 1.2e-12 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1039
AccBSI CCGCTC 1 cut(s) 965
AccI GTMKAC 1 cut(s) 738
AccII CGCG 1 cut(s) 872
AciI CCGC 3 cut(s) 105, 965, 981
AclWI GGATC 1 cut(s) 1081
AcoI YGGCCR 4 cut(s) 102, 345, 363, 603
AcsI RAATTY 2 cut(s) 277, 391
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 5 cut(s) 228, 284, 814, 835, 869
AflIII ACRYGT 2 cut(s) 830, 870
AgsI TTSAA 6 cut(s) 37, 194, 391, 678, 1085, 1095
AjnI CCWGG 1 cut(s) 798
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 6 cut(s) 214, 557, 609, 686, 940, 1053
AluI AGCT 6 cut(s) 214, 557, 609, 686, 940, 1053
Alw26I GTCTC 1 cut(s) 1130
AlwI GGATC 1 cut(s) 1081
AlwNI CAGNNNCTG 2 cut(s) 747, 1076
Ama87I CYCGRG 2 cut(s) 219, 1101
AoxI GGCC 7 cut(s) 102, 206, 345, 363, 603, 860, 884
ApeKI GCWGC 4 cut(s) 551, 554, 683, 940
ApoI RAATTY 2 cut(s) 277, 391
AseI ATTAAT 1 cut(s) 434
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 3 cut(s) 495, 860, 884
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 2 cut(s) 665, 1039
AvaI CYCGRG 2 cut(s) 219, 1101
AvaII GGWCC 1 cut(s) 495
BaeI ACNNNNGTAYC 2 cut(s) 804, 837
BalI TGGCCA 2 cut(s) 365, 605
BanI GGYRCC 1 cut(s) 1039
BbsI GAAGAC 1 cut(s) 584
BbvI GCAGC 4 cut(s) 563, 566, 695, 927
BccI CCATC 3 cut(s) 107, 374, 643
BcgI CGANNNNNNTGC 2 cut(s) 540, 574
BciT130I CCWGG 1 cut(s) 800
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 1130
BfaI CTAG 3 cut(s) 666, 959, 1174
BfmI CTRYAG 2 cut(s) 1068, 1077
BisI GCNGC 6 cut(s) 105, 552, 555, 684, 941, 982
BlsI GCNGC 6 cut(s) 106, 553, 556, 685, 942, 983
Bme1390I CCNGG 2 cut(s) 344, 800
Bme18I GGWCC 1 cut(s) 495
BmeT110I CYCGRG 2 cut(s) 219, 1101
BmgT120I GGNCC 3 cut(s) 495, 860, 884
BmiI GGNNCC 2 cut(s) 752, 1041
BmrFI CCNGG 2 cut(s) 344, 800
BpiI GAAGAC 1 cut(s) 584
BpmI CTGGAG 2 cut(s) 99, 837
BpuMI CCSGG 1 cut(s) 344
BsaI GGTCTC 1 cut(s) 1130
BsaJI CCNNGG 4 cut(s) 612, 799, 946, 1100
Bse1I ACTGG 4 cut(s) 105, 712, 752, 820
Bse3DI GCAATG 2 cut(s) 285, 459
BseBI CCWGG 1 cut(s) 800
BseDI CCNNGG 4 cut(s) 612, 799, 946, 1100
BseGI GGATG 1 cut(s) 339
BseMI GCAATG 2 cut(s) 285, 459
BseNI ACTGG 4 cut(s) 105, 712, 752, 820
BseRI GAGGAG 2 cut(s) 221, 1073
BseXI GCAGC 4 cut(s) 563, 566, 695, 927
BsgI GTGCAG 1 cut(s) 926
Bsh1236I CGCG 1 cut(s) 872
Bsh1285I CGRYCG 1 cut(s) 1162
BshFI GGCC 7 cut(s) 104, 208, 347, 365, 605, 862, 886
BshNI GGYRCC 1 cut(s) 1039
BsiEI CGRYCG 1 cut(s) 1162
BsiHKCI CYCGRG 2 cut(s) 219, 1101
BsiSI CCGG 1 cut(s) 344
BslFI GGGAC 3 cut(s) 700, 758, 817
BsmAI GTCTC 1 cut(s) 1130
BsmFI GGGAC 3 cut(s) 700, 758, 817
BsnI GGCC 7 cut(s) 104, 208, 347, 365, 605, 862, 886
Bso31I GGTCTC 1 cut(s) 1130
BsoBI CYCGRG 2 cut(s) 219, 1101
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 1073, 1159
BspACI CCGC 3 cut(s) 105, 965, 981
BspANI GGCC 7 cut(s) 104, 208, 347, 365, 605, 862, 886
BspFNI CGCG 1 cut(s) 872
BspLI GGNNCC 2 cut(s) 752, 1041
BspMAI CTGCAG 1 cut(s) 1072
BspPI GGATC 1 cut(s) 1081
BspT107I GGYRCC 1 cut(s) 1039
BspTNI GGTCTC 1 cut(s) 1130
BsrBI CCGCTC 1 cut(s) 965
BsrDI GCAATG 2 cut(s) 285, 459
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 4 cut(s) 105, 712, 752, 820
BssECI CCNNGG 4 cut(s) 612, 799, 946, 1100
BssMI GATC 2 cut(s) 1073, 1159
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 1 cut(s) 800
Bst4CI ACNGT 4 cut(s) 163, 790, 808, 1141
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 206, 254, 607
BstDEI CTNAG 1 cut(s) 645
BstF5I GGATG 1 cut(s) 339
BstFNI CGCG 1 cut(s) 872
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 2 cut(s) 1076, 1162
BstMAI GTCTC 1 cut(s) 1130
BstMBI GATC 2 cut(s) 1073, 1159
BstMCI CGRYCG 1 cut(s) 1162
BstMWI GCNNNNNNNGC 3 cut(s) 179, 296, 317
BstNI CCWGG 1 cut(s) 800
BstNSI RCATGY 1 cut(s) 834
BstSCI CCNGG 2 cut(s) 342, 798
BstSFI CTRYAG 2 cut(s) 1068, 1077
BstUI CGCG 1 cut(s) 872
BstV1I GCAGC 4 cut(s) 563, 566, 695, 927
BstV2I GAAGAC 1 cut(s) 584
BstX2I RGATCY 1 cut(s) 1073
BstXI CCANNNNNNTGG 1 cut(s) 613
BstYI RGATCY 1 cut(s) 1073
BsuRI GGCC 7 cut(s) 104, 208, 347, 365, 605, 862, 886
BtsCI GGATG 1 cut(s) 339
Cac8I GCNNGC 3 cut(s) 206, 254, 607
CaiI CAGNNNCTG 2 cut(s) 747, 1076
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 3 cut(s) 495, 860, 884
CseI GACGC 2 cut(s) 724, 861
Csp6I GTAC 5 cut(s) 227, 283, 813, 834, 868
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 7 cut(s) 29, 503, 518, 563, 831, 853, 1129
CviQI GTAC 5 cut(s) 227, 283, 813, 834, 868
DdeI CTNAG 1 cut(s) 645
DpnI GATC 2 cut(s) 1075, 1161
DpnII GATC 2 cut(s) 1073, 1159
EaeI YGGCCR 4 cut(s) 102, 345, 363, 603
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 1130
Eco47I GGWCC 1 cut(s) 495
Eco57I CTGAAG 1 cut(s) 133
Eco88I CYCGRG 2 cut(s) 219, 1101
EcoO109I RGGNCCY 1 cut(s) 860
EcoRII CCWGG 1 cut(s) 798
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
FaeI CATG 7 cut(s) 32, 506, 521, 566, 834, 856, 1132
FaqI GGGAC 3 cut(s) 700, 758, 817
FatI CATG 7 cut(s) 28, 502, 517, 562, 830, 852, 1128
FblI GTMKAC 1 cut(s) 738
Fnu4HI GCNGC 6 cut(s) 105, 552, 555, 684, 941, 982
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 6 cut(s) 105, 552, 555, 684, 941, 982
FspBI CTAG 3 cut(s) 666, 959, 1174
GlaI GCGC 1 cut(s) 682
GluI GCNGC 6 cut(s) 105, 552, 555, 684, 941, 982
GsuI CTGGAG 2 cut(s) 99, 837
HaeIII GGCC 7 cut(s) 104, 208, 347, 365, 605, 862, 886
HapII CCGG 1 cut(s) 344
HgaI GACGC 2 cut(s) 724, 861
HhaI GCGC 1 cut(s) 683
Hin1II CATG 7 cut(s) 32, 506, 521, 566, 834, 856, 1132
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 6 cut(s) 85, 303, 335, 508, 739, 1154
HindII GTYRAC 6 cut(s) 85, 303, 335, 508, 739, 1154
HinfI GANTC 3 cut(s) 81, 1030, 1064
HpaI GTTAAC 1 cut(s) 303
HpaII CCGG 1 cut(s) 344
HphI GGTGA 2 cut(s) 665, 1039
Hpy166II GTNNAC 7 cut(s) 69, 85, 303, 335, 508, 739, 1154
Hpy188I TCNGA 2 cut(s) 828, 950
Hpy188III TCNNGA 3 cut(s) 127, 479, 1103
Hpy8I GTNNAC 7 cut(s) 69, 85, 303, 335, 508, 739, 1154
Hpy99I CGWCG 1 cut(s) 740
HpyAV CCTTC 2 cut(s) 406, 1018
HpyCH4III ACNGT 4 cut(s) 163, 790, 808, 1141
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 7 cut(s) 28, 290, 311, 517, 846, 943, 1070
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 296, 317
HpyF3I CTNAG 1 cut(s) 645
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 7 cut(s) 32, 506, 521, 566, 834, 856, 1132
HspAI GCGC 1 cut(s) 681
KspAI GTTAAC 1 cut(s) 303
Kzo9I GATC 2 cut(s) 1073, 1159
LmnI GCTCC 6 cut(s) 178, 263, 399, 449, 614, 962
Lsp1109I GCAGC 4 cut(s) 563, 566, 695, 927
MaeI CTAG 3 cut(s) 666, 959, 1174
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 3 cut(s) 270, 617, 1141
MalI GATC 2 cut(s) 1075, 1161
MbiI CCGCTC 1 cut(s) 965
MboI GATC 2 cut(s) 1073, 1159
MboII GAAGA 2 cut(s) 178, 584
MflI RGATCY 1 cut(s) 1073
MlsI TGGCCA 2 cut(s) 365, 605
MluCI AATT 5 cut(s) 277, 391, 633, 690, 1086
MluI ACGCGT 1 cut(s) 870
MluNI TGGCCA 2 cut(s) 365, 605
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 3 cut(s) 360, 749, 909
MnlI CCTC 9 cut(s) 242, 541, 740, 851, 920, 956, 1051, 1054, 1110
Mox20I TGGCCA 2 cut(s) 365, 605
MscI TGGCCA 2 cut(s) 365, 605
MseI TTAA 5 cut(s) 18, 50, 302, 395, 434
MslI CAYNNNNRTG 3 cut(s) 221, 567, 851
Msp20I TGGCCA 2 cut(s) 365, 605
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 2 cut(s) 344, 800
MvaI CCWGG 1 cut(s) 800
MvnI CGCG 1 cut(s) 872
MwoI GCNNNNNNNGC 3 cut(s) 179, 296, 317
NciI CCSGG 1 cut(s) 344
NdeII GATC 2 cut(s) 1073, 1159
NlaIII CATG 7 cut(s) 32, 506, 521, 566, 834, 856, 1132
NlaIV GGNNCC 2 cut(s) 752, 1041
NmuCI GTSAC 2 cut(s) 270, 1141
NspI RCATGY 1 cut(s) 834
OliI CACNNNNGTG 1 cut(s) 221
PciI ACATGT 1 cut(s) 830
PfeI GAWTC 2 cut(s) 1030, 1064
PkrI GCNGC 6 cut(s) 106, 553, 556, 685, 942, 983
Ple19I CGATCG 1 cut(s) 1162
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PscI ACATGT 1 cut(s) 830
PshBI ATTAAT 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 798
PspGI CCWGG 1 cut(s) 798
PspN4I GGNNCC 2 cut(s) 752, 1041
PspPI GGNCC 3 cut(s) 495, 860, 884
PstI CTGCAG 1 cut(s) 1072
PstNI CAGNNNCTG 2 cut(s) 747, 1076
PsuI RGATCY 1 cut(s) 1073
PvuI CGATCG 1 cut(s) 1162
RsaI GTAC 5 cut(s) 228, 284, 814, 835, 869
RsaNI GTAC 5 cut(s) 227, 283, 813, 834, 868
RseI CAYNNNNRTG 3 cut(s) 221, 567, 851
SalI GTCGAC 1 cut(s) 737
SaqAI TTAA 5 cut(s) 18, 50, 302, 395, 434
SatI GCNGC 6 cut(s) 105, 552, 555, 684, 941, 982
Sau3AI GATC 2 cut(s) 1073, 1159
Sau96I GGNCC 3 cut(s) 495, 860, 884
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 2 cut(s) 344, 800
SfcI CTRYAG 2 cut(s) 1068, 1077
SinI GGWCC 1 cut(s) 495
SmiMI CAYNNNNRTG 3 cut(s) 221, 567, 851
Sse9I AATT 5 cut(s) 277, 391, 633, 690, 1086
SsiI CCGC 3 cut(s) 105, 965, 981
SspI AATATT 1 cut(s) 775
SspMI CTAG 3 cut(s) 666, 959, 1174
StyD4I CCNGG 2 cut(s) 342, 798
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 4 cut(s) 163, 790, 808, 1141
TaiI ACGT 1 cut(s) 308
TaqI TCGA 1 cut(s) 738
TasI AATT 5 cut(s) 277, 391, 633, 690, 1086
TatI WGTACW 2 cut(s) 282, 833
TauI GCSGC 2 cut(s) 107, 984
TfiI GAWTC 2 cut(s) 1030, 1064
Tru1I TTAA 5 cut(s) 18, 50, 302, 395, 434
Tru9I TTAA 5 cut(s) 18, 50, 302, 395, 434
TseFI GTSAC 2 cut(s) 270, 1141
TseI GCWGC 4 cut(s) 551, 554, 683, 940
Tsp45I GTSAC 2 cut(s) 270, 1141
TspDTI ATGAA 1 cut(s) 1145
VpaK11BI GGWCC 1 cut(s) 495
VspI ATTAAT 1 cut(s) 434
XapI RAATTY 2 cut(s) 277, 391
XceI RCATGY 1 cut(s) 834
XmiI GTMKAC 1 cut(s) 738
XspI CTAG 3 cut(s) 666, 959, 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.