Rw7G031260

EamA-like transporter family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000337
Physical Location & Seq
Reverse (-)
44661936 .. 44665841
3906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031260.1

Sequence Viewer

Length: 981 bp
ATGGAGGGGATGAAGCCTGTTATGGTTATGGTGTTGGTTCAGAGTCTATTTGCAGGGATGAATGTATTGTACAAAATAGTGGCAAATGATGGCATAAATTTCAGGATTCTCATTGCCTACCGCATGGTGTTTGCTGCCGCCTTCATGACTCCTTTTGCTCTCGTTTTCGAAATAAGGGGAACAGTAGCACAAAATCTGTATATCGAGAGCCTAGCCAAAACATCAGCAACATATTCAGTAGCTATATTTAACCTCGTTCCAGCGATTACGTTTATCCTTTCCACTTCTTTGAGAATGGAGAAATTGGCCATACGAACTCATGCCGGGAAAGCTAAAGTTGTCGGAACAATTTTGGGGATAGGGGGGGCTATGCTTTTCACCTTCTACAAAGGCTTTCAGATTAATATTTGGTCTACAAACATTAATCTTCTAAGCCATTACGGTGACAAGAACAACCATGCTCAAGCTCCATCATCAGCAAACAAGGACTCAGGAAGTATTTTGTTAGGATCAGGCATGGCTCTGGGTAGCTGTACATCTTTTGCTATTTGGCTTATAATCCAGGCAAAAATGAATAAGGGATATCCCTACCTATACTCGAGCACAGCTCTAATGGCCTTCATGGGATCAGTTCAATCTGTAGCTTTTTCCATTTGCATGGATAGGGATTGGAAGCAGTGGAAGTTGGGATGGAACATTCAACTTCTTGCAATGTCTTATTCGGGTATTTTCAACTCTGGAATTGCTGTGACTCTAATGGCATGGTGCGTAAAGAAGGGAGGACCAGTGTTCGTTGCAAGTTTTCAGCCTCTCTTGCTTGTGATGGTTGCAGTTGCTGGGTCTCTGCTTCTGGATGAGAAGTTGCACCTTGGAAGGTATGACTTACACATGCTAATGTCATGCAGCAACACAAAACTTTGGCACATAATAATTTGCCAAGCTAATGCACAATACCCAATCTATCAACAACTAAACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

326

Amino Acids

35.92

Weight (kDa)

9.5

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 170 - 290 2e-09 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 557
AccI GTMKAC 1 cut(s) 413
AciI CCGC 2 cut(s) 121, 138
AclWI GGATC 2 cut(s) 517, 634
AcoI YGGCCR 1 cut(s) 306
AcsI RAATTY 1 cut(s) 97
AfaI GTAC 2 cut(s) 71, 535
AgsI TTSAA 3 cut(s) 635, 701, 733
AjnI CCWGG 1 cut(s) 561
AluBI AGCT 7 cut(s) 242, 332, 467, 531, 608, 644, 941
AluI AGCT 7 cut(s) 242, 332, 467, 531, 608, 644, 941
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 1 cut(s) 846
AlwI GGATC 2 cut(s) 517, 634
AlwNI CAGNNNCTG 1 cut(s) 836
Ama87I CYCGRG 1 cut(s) 598
AoxI GGCC 2 cut(s) 306, 615
ApeKI GCWGC 2 cut(s) 134, 903
ApoI RAATTY 1 cut(s) 97
AseI ATTAAT 2 cut(s) 402, 423
AspS9I GGNCC 1 cut(s) 782
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 2 cut(s) 370, 455
AsuII TTCGAA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 598
AvaII GGWCC 1 cut(s) 782
BalI TGGCCA 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 121, 915
BccI CCATC 4 cut(s) 83, 478, 684, 817
BciT130I CCWGG 1 cut(s) 563
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 846
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 639
BisI GCNGC 3 cut(s) 135, 138, 904
BlsI GCNGC 3 cut(s) 136, 139, 905
Bme1390I CCNGG 2 cut(s) 325, 563
Bme18I GGWCC 1 cut(s) 782
BmeT110I CYCGRG 1 cut(s) 598
BmgT120I GGNCC 1 cut(s) 782
BmrFI CCNGG 2 cut(s) 325, 563
BplI GAGNNNNNCTC 2 cut(s) 592, 624
Bpu14I TTCGAA 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 447
BpuMI CCSGG 1 cut(s) 325
BsaI GGTCTC 1 cut(s) 846
BsaJI CCNNGG 1 cut(s) 868
BsaXI ACNNNNNCTCC 2 cut(s) 771, 801
Bse1I ACTGG 1 cut(s) 785
Bse3DI GCAATG 2 cut(s) 111, 717
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 1 cut(s) 868
BseGI GGATG 4 cut(s) 15, 63, 695, 859
BseMI GCAATG 2 cut(s) 111, 717
BseMII CTCAG 1 cut(s) 504
BseNI ACTGG 1 cut(s) 785
BseXI GCAGC 2 cut(s) 121, 915
BseYI CCCAGC 1 cut(s) 836
BshFI GGCC 2 cut(s) 308, 617
BsiHKAI GWGCWC 1 cut(s) 605
BsiHKCI CYCGRG 1 cut(s) 598
BsiSI CCGG 1 cut(s) 324
BsmAI GTCTC 1 cut(s) 846
BsnI GGCC 2 cut(s) 308, 617
Bso31I GGTCTC 1 cut(s) 846
BsoBI CYCGRG 1 cut(s) 598
Bsp119I TTCGAA 1 cut(s) 168
Bsp1286I GDGCHC 1 cut(s) 605
Bsp1407I TGTACA 2 cut(s) 69, 533
Bsp143I GATC 2 cut(s) 509, 626
BspACI CCGC 2 cut(s) 121, 138
BspANI GGCC 2 cut(s) 308, 617
BspCNI CTCAG 1 cut(s) 503
BspHI TCATGA 1 cut(s) 144
BspPI GGATC 2 cut(s) 517, 634
BspT104I TTCGAA 1 cut(s) 168
BspTNI GGTCTC 1 cut(s) 846
BsrDI GCAATG 2 cut(s) 111, 717
BsrGI TGTACA 2 cut(s) 69, 533
BsrI ACTGG 1 cut(s) 785
BssECI CCNNGG 1 cut(s) 868
BssMI GATC 2 cut(s) 509, 626
BssT1I CCWWGG 1 cut(s) 868
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 2 cut(s) 184, 443
BstAUI TGTACA 2 cut(s) 69, 533
BstBI TTCGAA 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 431, 490
BstF5I GGATG 4 cut(s) 15, 63, 695, 859
BstKTI GATC 2 cut(s) 512, 629
BstMAI GTCTC 1 cut(s) 846
BstMBI GATC 2 cut(s) 509, 626
BstMWI GCNNNNNNNGC 3 cut(s) 329, 614, 814
BstNI CCWGG 1 cut(s) 563
BstNSI RCATGY 1 cut(s) 892
BstSCI CCNGG 2 cut(s) 323, 561
BstSFI CTRYAG 1 cut(s) 639
BstV1I GCAGC 2 cut(s) 121, 915
BstXI CCANNNNNNTGG 1 cut(s) 658
BsuRI GGCC 2 cut(s) 308, 617
BtsCI GGATG 4 cut(s) 15, 63, 695, 859
BtsI GCAGTG 1 cut(s) 683
BtsIMutI CAGTG 2 cut(s) 683, 792
CaiI CAGNNNCTG 1 cut(s) 836
CciI TCATGA 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 782
Csp6I GTAC 2 cut(s) 70, 534
CviQI GTAC 2 cut(s) 70, 534
DdeI CTNAG 2 cut(s) 431, 490
DpnI GATC 2 cut(s) 511, 628
DpnII GATC 2 cut(s) 509, 626
EaeI YGGCCR 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 868
Eco31I GGTCTC 1 cut(s) 846
Eco32I GATATC 1 cut(s) 584
Eco47I GGWCC 1 cut(s) 782
Eco88I CYCGRG 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 561
EcoRV GATATC 1 cut(s) 584
EcoT14I CCWWGG 1 cut(s) 868
ErhI CCWWGG 1 cut(s) 868
FblI GTMKAC 1 cut(s) 413
Fnu4HI GCNGC 3 cut(s) 135, 138, 904
FokI GGATG 4 cut(s) 22, 70, 702, 866
Fsp4HI GCNGC 3 cut(s) 135, 138, 904
FspBI CTAG 1 cut(s) 212
GluI GCNGC 3 cut(s) 135, 138, 904
GsaI CCCAGC 1 cut(s) 840
HaeIII GGCC 2 cut(s) 308, 617
HapII CCGG 1 cut(s) 324
HinfI GANTC 5 cut(s) 43, 106, 148, 488, 751
HpaII CCGG 1 cut(s) 324
HphI GGTGA 2 cut(s) 370, 455
Hpy166II GTNNAC 1 cut(s) 414
Hpy188I TCNGA 3 cut(s) 42, 344, 399
Hpy188III TCNNGA 6 cut(s) 103, 145, 205, 492, 738, 851
Hpy8I GTNNAC 1 cut(s) 414
HpyAV CCTTC 5 cut(s) 151, 391, 628, 769, 867
HpyCH4III ACNGT 2 cut(s) 184, 443
HpyCH4IV ACGT 1 cut(s) 269
HpyCH4V TGCA 8 cut(s) 53, 657, 710, 797, 830, 865, 903, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 614, 814
HpyF3I CTNAG 2 cut(s) 431, 490
HpySE526I ACGT 1 cut(s) 269
Kzo9I GATC 2 cut(s) 509, 626
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 2 cut(s) 121, 915
MaeI CTAG 1 cut(s) 212
MaeII ACGT 1 cut(s) 269
MaeIII GTNAC 2 cut(s) 443, 748
MalI GATC 2 cut(s) 511, 628
MboI GATC 2 cut(s) 509, 626
MboII GAAGA 1 cut(s) 419
MhlI GDGCHC 1 cut(s) 605
MlsI TGGCCA 1 cut(s) 308
MluCI AATT 5 cut(s) 97, 302, 348, 741, 930
MluNI TGGCCA 1 cut(s) 308
MlyI GAGTC 4 cut(s) 52, 142, 482, 745
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 3 cut(s) 263, 773, 819
Mox20I TGGCCA 1 cut(s) 308
MscI TGGCCA 1 cut(s) 308
MseI TTAA 4 cut(s) 249, 402, 423, 979
MslI CAYNNNNRTG 3 cut(s) 441, 656, 893
Msp20I TGGCCA 1 cut(s) 308
MspI CCGG 1 cut(s) 324
MspR9I CCNGG 2 cut(s) 325, 563
MvaI CCWGG 1 cut(s) 563
MwoI GCNNNNNNNGC 3 cut(s) 329, 614, 814
NciI CCSGG 1 cut(s) 325
NdeII GATC 2 cut(s) 509, 626
NmuCI GTSAC 2 cut(s) 443, 748
NspI RCATGY 1 cut(s) 892
NspV TTCGAA 1 cut(s) 168
PaeR7I CTCGAG 1 cut(s) 598
PagI TCATGA 1 cut(s) 144
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 3 cut(s) 136, 139, 905
PleI GAGTC 4 cut(s) 51, 142, 482, 745
PpsI GAGTC 4 cut(s) 51, 142, 482, 745
PshBI ATTAAT 2 cut(s) 402, 423
PsiI TTATAA 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 561
PspFI CCCAGC 1 cut(s) 836
PspGI CCWGG 1 cut(s) 561
PspPI GGNCC 1 cut(s) 782
PspXI VCTCGAGB 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 836
RsaI GTAC 2 cut(s) 71, 535
RsaNI GTAC 2 cut(s) 70, 534
RseI CAYNNNNRTG 3 cut(s) 441, 656, 893
SaqAI TTAA 4 cut(s) 249, 402, 423, 979
SatI GCNGC 3 cut(s) 135, 138, 904
Sau3AI GATC 2 cut(s) 509, 626
Sau96I GGNCC 1 cut(s) 782
SchI GAGTC 4 cut(s) 52, 142, 482, 745
ScrFI CCNGG 2 cut(s) 325, 563
SduI GDGCHC 1 cut(s) 605
SfcI CTRYAG 1 cut(s) 639
Sfr274I CTCGAG 1 cut(s) 598
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 1 cut(s) 782
SlaI CTCGAG 1 cut(s) 598
SmiMI CAYNNNNRTG 3 cut(s) 441, 656, 893
SmlI CTYRAG 2 cut(s) 462, 598
SmoI CTYRAG 2 cut(s) 462, 598
Sse9I AATT 5 cut(s) 97, 302, 348, 741, 930
SsiI CCGC 2 cut(s) 121, 138
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 2 cut(s) 323, 561
StyI CCWWGG 1 cut(s) 868
TaaI ACNGT 2 cut(s) 184, 443
TaiI ACGT 1 cut(s) 272
TaqI TCGA 3 cut(s) 168, 204, 599
TasI AATT 5 cut(s) 97, 302, 348, 741, 930
TatI WGTACW 2 cut(s) 69, 533
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 4 cut(s) 249, 402, 423, 979
Tru9I TTAA 4 cut(s) 249, 402, 423, 979
TscAI CASTG 2 cut(s) 683, 792
TseFI GTSAC 2 cut(s) 443, 748
TseI GCWGC 2 cut(s) 134, 903
Tsp45I GTSAC 2 cut(s) 443, 748
TspDTI ATGAA 5 cut(s) 26, 74, 133, 587, 610
TspRI CASTG 2 cut(s) 683, 792
VpaK11BI GGWCC 1 cut(s) 782
VspI ATTAAT 2 cut(s) 402, 423
XapI RAATTY 1 cut(s) 97
XceI RCATGY 1 cut(s) 892
XhoI CTCGAG 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 413
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.