RchiOBHm_Chr7g0224261

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
46245232 .. 46247178
1947 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20080

Sequence Viewer

Length: 1167 bp
ATGAAGCCGGTGATATCGATGGTGATCGTTCAGATATCATATGCAGCAATGAATATATTTTGTAAACTTGCAGCAGAGGCTGGAATGAATCTCAATATTCTCGTTGCCTACCGTCTCATGTTTTCCTCTGCCTTTATCGTTCCTCTTGCTCTTAAACTCGAAAGGAACAGCAGGCCCAAACTCACCCTAGTCGTACTCTTTCAAGCTTTTCTCTGCGGTTTGTTTGGGGGAACATTGTCACAAAATCTATTCGTAGAAGCACTGGTCTTGACATCTTCGACATTTGTTGCAGCCAGTTCAAATCTGATTCCGGCGGTCACCTTCATCATGGCCATCTGTTTCAGGTTGGAGAAGTTGACACTAGGAAGCCATGCAGGGAAGGCAAAGCTTGTGGGGACAGTGATGGGTATCGGTGGTGCTATGATCTTTACCTTCGTCAAAGGACCAGAGTTCTCCATCTGGTCAACTCGCATTGACCTTCTTCAAGGTCACCAGGCAGCAGCACCATCACCGTCAACGTCCTCCTCCCACAGAAGCACCGGTAGTTACTTGCTGGGCTGCTTCTTGGCTCTCGGAAGCACCGTTTCCTTTGCAATGTGGCTCATACTTCAGGCAAAAATGAGCAAGAGATATCCATGCCATTACTCGAGTACGGCTCTAATGTCGGTTATGGGATCGATTCAGTCGGTAGTTTTTGCACTCTGCGTGGAGAGGGATTGGAGCCAGTGGAAATTGGGTTGGAACATCAAGCTTCTTGCAGCTGCATATTCGGGAATTGTGACTTCGGGGATGGCGGTGGTTCTTGTCTCGTGGTGTGTACGCAAGAGAGGTCCATTGTTCGTGTCAATTTTCACTCCGCTCTGCTTGGTGATTGTGGCCATTGCTAGTTCTTTGTTGCTCAATGAAAAGTTAAGCCTAGGAAGCGTATTAGGAGGGATTGTAATTGTATTGGGGCTATACATGGTGCTCTGGGGAAAGAGCAAGGAGATGAAGACAATTGATAATGTGAACAGTGATCAAGAACAACCAGCCGCAGCAGCAGTACTACGATCTTCAACGAGACTCCAAGATTCCCAATTCATTGAAATTTTTGCAACAACTCAAGCACCGGACACTAATACCTCCGGTGACAATAACAGCAACACAAATGTTGTGTCTAGTAGTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

388

Amino Acids

41.71

Weight (kDa)

9.43

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 3 - 143 3.4e-12 EamA-like transporter family
EamA PF00892 185 - 323 2.7e-14 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 859
AciI CCGC 5 cut(s) 216, 314, 794, 857, 1032
AclWI GGATC 1 cut(s) 682
AcoI YGGCCR 2 cut(s) 330, 876
AcsI RAATTY 1 cut(s) 1086
AcuI CTGAAG 1 cut(s) 593
AfaI GTAC 4 cut(s) 195, 652, 819, 1044
AgeI ACCGGT 1 cut(s) 539
AgsI TTSAA 5 cut(s) 203, 300, 485, 1056, 1085
AjnI CCWGG 1 cut(s) 492
AluBI AGCT 4 cut(s) 206, 388, 751, 761
AluI AGCT 4 cut(s) 206, 388, 751, 761
Alw21I GWGCWC 1 cut(s) 969
Alw26I GTCTC 3 cut(s) 119, 811, 1054
AlwI GGATC 1 cut(s) 682
AlwNI CAGNNNCTG 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 646
AoxI GGCC 3 cut(s) 173, 330, 876
ApoI RAATTY 1 cut(s) 1086
ArsI GACNNNNNNTTYG 1 cut(s) 1139
AsiGI ACCGGT 1 cut(s) 539
AspA2I CCTAGG 1 cut(s) 916
AspS9I GGNCC 3 cut(s) 174, 443, 830
AsuHPI GGTGA 8 cut(s) 22, 34, 175, 310, 482, 501, 880, 1139
AvaI CYCGRG 1 cut(s) 646
AvaII GGWCC 2 cut(s) 443, 830
AvrII CCTAGG 1 cut(s) 916
BalI TGGCCA 2 cut(s) 332, 878
BauI CACGAG 1 cut(s) 808
BbsI GAAGAC 1 cut(s) 998
Bbv12I GWGCWC 1 cut(s) 969
BccI CCATC 6 cut(s) 13, 341, 397, 464, 514, 784
BceAI ACGGC 1 cut(s) 669
BciT130I CCWGG 1 cut(s) 494
BclI TGATCA 1 cut(s) 1015
BcoDI GTCTC 3 cut(s) 119, 811, 1054
BfaI CTAG 5 cut(s) 188, 362, 885, 917, 1158
BlnI CCTAGG 1 cut(s) 916
BmcAI AGTACT 1 cut(s) 1044
Bme1390I CCNGG 1 cut(s) 494
Bme18I GGWCC 2 cut(s) 443, 830
BmeT110I CYCGRG 1 cut(s) 646
BmgT120I GGNCC 3 cut(s) 174, 443, 830
BmiI GGNNCC 1 cut(s) 722
BmrFI CCNGG 1 cut(s) 494
BpiI GAAGAC 1 cut(s) 998
BplI GAGNNNNNCTC 2 cut(s) 640, 672
BpuEI CTTGAG 1 cut(s) 1086
Bsa29I ATCGAT 2 cut(s) 17, 677
BsaBI GATNNNNATC 2 cut(s) 23, 407
BsaJI CCNNGG 1 cut(s) 916
BsaWI WCCGGW 3 cut(s) 539, 1108, 1124
BsaXI ACNNNNNCTCC 2 cut(s) 924, 954
Bse118I RCCGGY 2 cut(s) 7, 539
Bse1I ACTGG 3 cut(s) 267, 294, 724
Bse3DI GCAATG 3 cut(s) 54, 600, 879
Bse8I GATNNNNATC 2 cut(s) 23, 407
BseBI CCWGG 1 cut(s) 494
BseCI ATCGAT 2 cut(s) 17, 677
BseDI CCNNGG 1 cut(s) 916
BseGI GGATG 1 cut(s) 795
BseJI GATNNNNATC 2 cut(s) 23, 407
BseMI GCAATG 3 cut(s) 54, 600, 879
BseNI ACTGG 3 cut(s) 267, 294, 724
BseRI GAGGAG 1 cut(s) 514
BseYI CCCAGC 1 cut(s) 553
BshFI GGCC 3 cut(s) 175, 332, 878
BshTI ACCGGT 1 cut(s) 539
BshVI ATCGAT 2 cut(s) 17, 677
BsiHKAI GWGCWC 1 cut(s) 969
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 5 cut(s) 8, 311, 540, 1109, 1125
BslFI GGGAC 1 cut(s) 409
BsmAI GTCTC 3 cut(s) 119, 811, 1054
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 3 cut(s) 175, 332, 878
BsoBI CYCGRG 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 969
Bsp143I GATC 5 cut(s) 24, 423, 674, 1015, 1049
BspACI CCGC 5 cut(s) 216, 314, 794, 857, 1032
BspANI GGCC 3 cut(s) 175, 332, 878
BspDI ATCGAT 2 cut(s) 17, 677
BspLI GGNNCC 1 cut(s) 722
BspPI GGATC 1 cut(s) 682
BsrBI CCGCTC 1 cut(s) 859
BsrDI GCAATG 3 cut(s) 54, 600, 879
BsrFI RCCGGY 2 cut(s) 7, 539
BsrI ACTGG 3 cut(s) 267, 294, 724
BssAI RCCGGY 2 cut(s) 7, 539
BssECI CCNNGG 1 cut(s) 916
BssMI GATC 5 cut(s) 24, 423, 674, 1015, 1049
BssSI CACGAG 1 cut(s) 808
BssT1I CCWWGG 1 cut(s) 916
Bst2BI CACGAG 1 cut(s) 808
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 5 cut(s) 113, 400, 513, 583, 1013
BstC8I GCNNGC 1 cut(s) 173
BstEII GGTNACC 2 cut(s) 316, 488
BstF5I GGATG 1 cut(s) 795
BstKTI GATC 5 cut(s) 27, 426, 677, 1018, 1052
BstMAI GTCTC 3 cut(s) 119, 811, 1054
BstMBI GATC 5 cut(s) 24, 423, 674, 1015, 1049
BstMWI GCNNNNNNNGC 4 cut(s) 77, 380, 921, 1037
BstNI CCWGG 1 cut(s) 494
BstPI GGTNACC 2 cut(s) 316, 488
BstSCI CCNGG 1 cut(s) 492
BstV2I GAAGAC 1 cut(s) 998
Bsu15I ATCGAT 2 cut(s) 17, 677
BsuRI GGCC 3 cut(s) 175, 332, 878
BsuTUI ATCGAT 2 cut(s) 17, 677
BtsCI GGATG 1 cut(s) 795
BtsIMutI CAGTG 4 cut(s) 260, 405, 731, 1018
Cac8I GCNNGC 1 cut(s) 173
CaiI CAGNNNCTG 1 cut(s) 80
Cfr10I RCCGGY 2 cut(s) 7, 539
Cfr13I GGNCC 3 cut(s) 174, 443, 830
ClaI ATCGAT 2 cut(s) 17, 677
Csp6I GTAC 4 cut(s) 194, 651, 818, 1043
CspAI ACCGGT 1 cut(s) 539
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 5 cut(s) 118, 328, 371, 636, 961
CviQI GTAC 4 cut(s) 194, 651, 818, 1043
DpnI GATC 5 cut(s) 26, 425, 676, 1017, 1051
DpnII GATC 5 cut(s) 24, 423, 674, 1015, 1049
EaeI YGGCCR 2 cut(s) 330, 876
Eco130I CCWWGG 1 cut(s) 916
Eco32I GATATC 3 cut(s) 15, 36, 632
Eco47I GGWCC 2 cut(s) 443, 830
Eco57I CTGAAG 1 cut(s) 593
Eco88I CYCGRG 1 cut(s) 646
Eco91I GGTNACC 2 cut(s) 316, 488
EcoO65I GGTNACC 2 cut(s) 316, 488
EcoRII CCWGG 1 cut(s) 492
EcoRV GATATC 3 cut(s) 15, 36, 632
EcoT14I CCWWGG 1 cut(s) 916
ErhI CCWWGG 1 cut(s) 916
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 5 cut(s) 121, 331, 374, 639, 964
FaqI GGGAC 1 cut(s) 409
FatI CATG 5 cut(s) 117, 327, 370, 635, 960
FauNDI CATATG 1 cut(s) 40
FbaI TGATCA 1 cut(s) 1015
FokI GGATG 1 cut(s) 802
FspBI CTAG 5 cut(s) 188, 362, 885, 917, 1158
GsaI CCCAGC 1 cut(s) 557
HaeIII GGCC 3 cut(s) 175, 332, 878
HapII CCGG 5 cut(s) 8, 311, 540, 1109, 1125
Hin1II CATG 5 cut(s) 121, 331, 374, 639, 964
HincII GTYRAC 3 cut(s) 357, 465, 516
HindII GTYRAC 3 cut(s) 357, 465, 516
HindIII AAGCTT 3 cut(s) 204, 386, 749
HinfI GANTC 5 cut(s) 88, 307, 679, 1062, 1070
HpaII CCGG 5 cut(s) 8, 311, 540, 1109, 1125
HphI GGTGA 8 cut(s) 22, 34, 175, 310, 482, 501, 880, 1139
Hpy166II GTNNAC 6 cut(s) 65, 357, 465, 516, 818, 1009
Hpy188I TCNGA 3 cut(s) 33, 306, 575
Hpy188III TCNNGA 3 cut(s) 268, 771, 1019
Hpy8I GTNNAC 6 cut(s) 65, 357, 465, 516, 818, 1009
HpyAV CCTTC 4 cut(s) 331, 373, 442, 488
HpyCH4III ACNGT 5 cut(s) 113, 400, 513, 583, 1013
HpyCH4IV ACGT 1 cut(s) 518
HpyCH4V TGCA 9 cut(s) 44, 71, 290, 374, 593, 698, 758, 764, 1094
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 380, 921, 1037
HpySE526I ACGT 1 cut(s) 518
Hsp92II CATG 5 cut(s) 121, 331, 374, 639, 964
Ksp22I TGATCA 1 cut(s) 1015
Kzo9I GATC 5 cut(s) 24, 423, 674, 1015, 1049
LmnI GCTCC 1 cut(s) 720
MaeI CTAG 5 cut(s) 188, 362, 885, 917, 1158
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 6 cut(s) 237, 316, 488, 545, 778, 1127
MalI GATC 5 cut(s) 26, 425, 676, 1017, 1051
MbiI CCGCTC 1 cut(s) 859
MboI GATC 5 cut(s) 24, 423, 674, 1015, 1049
MboII GAAGA 4 cut(s) 267, 473, 1003, 1044
MfeI CAATTG 1 cut(s) 996
MhlI GDGCHC 1 cut(s) 969
MlsI TGGCCA 2 cut(s) 332, 878
MluCI AATT 7 cut(s) 731, 774, 846, 942, 996, 1076, 1086
MluNI TGGCCA 2 cut(s) 332, 878
MlyI GAGTC 1 cut(s) 1056
MmeI TCCRAC 2 cut(s) 327, 719
MnlI CCTC 9 cut(s) 70, 136, 153, 532, 535, 705, 821, 926, 1132
Mox20I TGGCCA 2 cut(s) 332, 878
MscI TGGCCA 2 cut(s) 332, 878
MseI TTAA 2 cut(s) 153, 911
Msp20I TGGCCA 2 cut(s) 332, 878
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 5 cut(s) 8, 311, 540, 1109, 1125
MspR9I CCNGG 1 cut(s) 494
MunI CAATTG 1 cut(s) 996
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 4 cut(s) 77, 380, 921, 1037
NdeI CATATG 1 cut(s) 40
NdeII GATC 5 cut(s) 24, 423, 674, 1015, 1049
NlaIII CATG 5 cut(s) 121, 331, 374, 639, 964
NlaIV GGNNCC 1 cut(s) 722
NmuCI GTSAC 5 cut(s) 237, 316, 488, 778, 1127
PaeR7I CTCGAG 1 cut(s) 646
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PfeI GAWTC 4 cut(s) 88, 307, 679, 1070
PinAI ACCGGT 1 cut(s) 539
PleI GAGTC 1 cut(s) 1056
PpsI GAGTC 1 cut(s) 1056
Psp6I CCWGG 1 cut(s) 492
PspEI GGTNACC 2 cut(s) 316, 488
PspFI CCCAGC 1 cut(s) 553
PspGI CCWGG 1 cut(s) 492
PspN4I GGNNCC 1 cut(s) 722
PspPI GGNCC 3 cut(s) 174, 443, 830
PspXI VCTCGAGB 1 cut(s) 646
PstNI CAGNNNCTG 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 4 cut(s) 195, 652, 819, 1044
RsaNI GTAC 4 cut(s) 194, 651, 818, 1043
SaqAI TTAA 2 cut(s) 153, 911
Sau3AI GATC 5 cut(s) 24, 423, 674, 1015, 1049
Sau96I GGNCC 3 cut(s) 174, 443, 830
ScaI AGTACT 1 cut(s) 1044
SchI GAGTC 1 cut(s) 1056
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 1 cut(s) 969
Sfr274I CTCGAG 1 cut(s) 646
SinI GGWCC 2 cut(s) 443, 830
SlaI CTCGAG 1 cut(s) 646
SmlI CTYRAG 2 cut(s) 646, 1101
SmoI CTYRAG 2 cut(s) 646, 1101
Sse9I AATT 7 cut(s) 731, 774, 846, 942, 996, 1076, 1086
SsiI CCGC 5 cut(s) 216, 314, 794, 857, 1032
SspI AATATT 1 cut(s) 97
SspMI CTAG 5 cut(s) 188, 362, 885, 917, 1158
StyD4I CCNGG 1 cut(s) 492
StyI CCWWGG 1 cut(s) 916
TaaI ACNGT 5 cut(s) 113, 400, 513, 583, 1013
TaiI ACGT 1 cut(s) 521
TaqI TCGA 5 cut(s) 17, 159, 278, 647, 677
TasI AATT 7 cut(s) 731, 774, 846, 942, 996, 1076, 1086
TatI WGTACW 1 cut(s) 1042
TauI GCSGC 1 cut(s) 1034
TfiI GAWTC 4 cut(s) 88, 307, 679, 1070
Tru1I TTAA 2 cut(s) 153, 911
Tru9I TTAA 2 cut(s) 153, 911
TscAI CASTG 4 cut(s) 267, 405, 731, 1018
TseFI GTSAC 5 cut(s) 237, 316, 488, 778, 1127
Tsp45I GTSAC 5 cut(s) 237, 316, 488, 778, 1127
TspDTI ATGAA 7 cut(s) 17, 65, 101, 313, 918, 1004, 1069
TspRI CASTG 4 cut(s) 267, 405, 731, 1018
VpaK11BI GGWCC 2 cut(s) 443, 830
XapI RAATTY 1 cut(s) 1086
XhoI CTCGAG 1 cut(s) 646
XmaJI CCTAGG 1 cut(s) 916
XspI CTAG 5 cut(s) 188, 362, 885, 917, 1158
ZrmI AGTACT 1 cut(s) 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.