Rh7CG395900

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
50434103 .. 50438339
4237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG395900.1

Sequence Viewer

Length: 1173 bp
ATGGGTGGTAGTTGTTTTAATGCTTTGCATGGGTTGAAGCCATTGATGTTAATGCTGGTGGTTCAGTTTACATCTGCTGGAGTCAACTTGTTCTACAAACTGGCCGCTAATGATGGAATGGACATCAGGATTATTATTGCCTATCGCTTCAGTTTTGCCACCGTTTTCCTTGCTCCTATTGCTCTCTTCGTTGAAAGAAAGAGCAGGCCAAAGCTCACTCGGGTGGTACTCCTCCAAGCATTTTTGTCTGGCTTGCTTGGGGGAGCATTGTCACAAAATTTGTACATTGCAAGTTTAGCGTTAACGTCTGCAACATTTGCTCTCGCCATAAGTCAACTCATCCCGGCCATAACTTTTGTTTTGGCCATCTCCTTTGGGTTGGAGAGATTGAATTTAAGGAGCGTAGGAGGGAAGGCAAAGGTGTTGGGAACATTAATGGGAATAGGTGGAGCAATGCTTATGACCTTTTACAAAGGTCTGGAAATCCACTTATGGACCACCCATGTTGACCTTTTGCATAGTCATCAGCAACAACCACACTTGGAGGCAGCAGCTTCGCATGAGTATGCTCATCGTCTGTTAGGTTGTCTTCTAGCTCTGGCCAGCTCGTTGGGTTACGCCTTCTGGCTAATTATTCAGGCTAAGATGGGTGAGAAATACCCTAGTTTTTATTCAAGCGCAGCTCTAATTTCACTTATGGGGTCAATCCAGTCCCTTGTTTTTGCCCTCTGCGTCAACAGGGACTGGAACCATTGGAAGTTGGGTTGGAATATTAGACTTCTAACAGTCTTATACCTGGGGACTGTGGGTACTGGAGTAAGTCTGACATGTACTACTCTTTGCATAAGCATGAGAGGGCCTTTGTACGCGTCAGTTTTTGGGCCTCTGGTTCTTGTTCTTGTTGCCCTCGTTGGCTCTTTGGTGTTGGACGAGAAGCTGCACCTCGGAAGTGTGCTAGGAGCGGTTCTAATCGTTGGCGGCTTATACGCTGTTCTGTGGGGAAAGAGCAAAGACATAAAGAAGGTGAATCAATCGGTGCCAACAACAAGCTATGAGGAGGAATCTGCAGGATCTGTAGTTGAAATTGTTTCAATGCCTCGGGATAATAATAAAGGCAATAACTACATGAATGAGACCGTCACAAATAGTCAACATGATCGCATAGAAACCTAG

Protein Analysis

390

Amino Acids

42.31

Weight (kDa)

9.2

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 15 - 155 9.1e-14 EamA-like transporter family
EamA PF00892 194 - 332 2.1e-12 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1036
AccBSI CCGCTC 1 cut(s) 962
AccII CGCG 1 cut(s) 869
AciI CCGC 3 cut(s) 105, 962, 978
AclWI GGATC 1 cut(s) 1078
AcoI YGGCCR 4 cut(s) 102, 345, 363, 600
AcsI RAATTY 2 cut(s) 277, 391
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 5 cut(s) 228, 284, 811, 832, 866
AflIII ACRYGT 2 cut(s) 827, 867
AgsI TTSAA 6 cut(s) 37, 194, 391, 675, 1082, 1092
AjnI CCWGG 1 cut(s) 795
AleI CACNNNNGTG 1 cut(s) 221
AluBI AGCT 7 cut(s) 214, 554, 596, 606, 683, 937, 1050
AluI AGCT 7 cut(s) 214, 554, 596, 606, 683, 937, 1050
Alw26I GTCTC 1 cut(s) 1127
AlwI GGATC 1 cut(s) 1078
AlwNI CAGNNNCTG 2 cut(s) 744, 1073
Ama87I CYCGRG 2 cut(s) 219, 1098
AoxI GGCC 7 cut(s) 102, 206, 345, 363, 600, 857, 881
ApeKI GCWGC 4 cut(s) 548, 551, 680, 937
ApoI RAATTY 2 cut(s) 277, 391
AseI ATTAAT 1 cut(s) 434
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 3 cut(s) 495, 857, 881
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 2 cut(s) 662, 1036
AvaI CYCGRG 2 cut(s) 219, 1098
AvaII GGWCC 1 cut(s) 495
BaeI ACNNNNGTAYC 2 cut(s) 801, 834
BalI TGGCCA 2 cut(s) 365, 602
BanI GGYRCC 1 cut(s) 1036
BbsI GAAGAC 1 cut(s) 581
BbvI GCAGC 4 cut(s) 560, 563, 692, 924
BccI CCATC 3 cut(s) 107, 374, 640
BcgI CGANNNNNNTGC 2 cut(s) 537, 571
BciT130I CCWGG 1 cut(s) 797
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 1 cut(s) 1127
BfaI CTAG 4 cut(s) 593, 663, 956, 1171
BfmI CTRYAG 2 cut(s) 1065, 1074
BisI GCNGC 6 cut(s) 105, 549, 552, 681, 938, 979
BlsI GCNGC 6 cut(s) 106, 550, 553, 682, 939, 980
Bme1390I CCNGG 2 cut(s) 344, 797
Bme18I GGWCC 1 cut(s) 495
BmeT110I CYCGRG 2 cut(s) 219, 1098
BmgT120I GGNCC 3 cut(s) 495, 857, 881
BmiI GGNNCC 2 cut(s) 749, 1038
BmrFI CCNGG 2 cut(s) 344, 797
BpiI GAAGAC 1 cut(s) 581
BpmI CTGGAG 2 cut(s) 99, 834
BpuMI CCSGG 1 cut(s) 344
BsaI GGTCTC 1 cut(s) 1127
BsaJI CCNNGG 3 cut(s) 796, 943, 1097
Bse1I ACTGG 4 cut(s) 105, 709, 749, 817
Bse3DI GCAATG 2 cut(s) 285, 459
BseBI CCWGG 1 cut(s) 797
BseDI CCNNGG 3 cut(s) 796, 943, 1097
BseGI GGATG 1 cut(s) 339
BseMI GCAATG 2 cut(s) 285, 459
BseNI ACTGG 4 cut(s) 105, 709, 749, 817
BseRI GAGGAG 2 cut(s) 221, 1070
BseXI GCAGC 4 cut(s) 560, 563, 692, 924
BsgI GTGCAG 1 cut(s) 923
Bsh1236I CGCG 1 cut(s) 869
BshFI GGCC 7 cut(s) 104, 208, 347, 365, 602, 859, 883
BshNI GGYRCC 1 cut(s) 1036
BsiHKCI CYCGRG 2 cut(s) 219, 1098
BsiSI CCGG 1 cut(s) 344
BslFI GGGAC 3 cut(s) 697, 755, 814
BsmAI GTCTC 1 cut(s) 1127
BsmFI GGGAC 3 cut(s) 697, 755, 814
BsnI GGCC 7 cut(s) 104, 208, 347, 365, 602, 859, 883
Bso31I GGTCTC 1 cut(s) 1127
BsoBI CYCGRG 2 cut(s) 219, 1098
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 1070, 1156
BspACI CCGC 3 cut(s) 105, 962, 978
BspANI GGCC 7 cut(s) 104, 208, 347, 365, 602, 859, 883
BspFNI CGCG 1 cut(s) 869
BspLI GGNNCC 2 cut(s) 749, 1038
BspMAI CTGCAG 1 cut(s) 1069
BspPI GGATC 1 cut(s) 1078
BspT107I GGYRCC 1 cut(s) 1036
BspTNI GGTCTC 1 cut(s) 1127
BsrBI CCGCTC 1 cut(s) 962
BsrDI GCAATG 2 cut(s) 285, 459
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 4 cut(s) 105, 709, 749, 817
BssECI CCNNGG 3 cut(s) 796, 943, 1097
BssMI GATC 2 cut(s) 1070, 1156
Bst2UI CCWGG 1 cut(s) 797
Bst4CI ACNGT 4 cut(s) 163, 787, 805, 1138
Bst6I CTCTTC 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 317
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 3 cut(s) 206, 254, 604
BstDEI CTNAG 1 cut(s) 642
BstF5I GGATG 1 cut(s) 339
BstFNI CGCG 1 cut(s) 869
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 2 cut(s) 1073, 1159
BstMAI GTCTC 1 cut(s) 1127
BstMBI GATC 2 cut(s) 1070, 1156
BstMWI GCNNNNNNNGC 3 cut(s) 179, 296, 317
BstNI CCWGG 1 cut(s) 797
BstNSI RCATGY 1 cut(s) 831
BstSCI CCNGG 2 cut(s) 342, 795
BstSFI CTRYAG 2 cut(s) 1065, 1074
BstUI CGCG 1 cut(s) 869
BstV1I GCAGC 4 cut(s) 560, 563, 692, 924
BstV2I GAAGAC 1 cut(s) 581
BstX2I RGATCY 1 cut(s) 1070
BstXI CCANNNNNNTGG 1 cut(s) 610
BstYI RGATCY 1 cut(s) 1070
BsuRI GGCC 7 cut(s) 104, 208, 347, 365, 602, 859, 883
BtsCI GGATG 1 cut(s) 339
Cac8I GCNNGC 3 cut(s) 206, 254, 604
CaiI CAGNNNCTG 2 cut(s) 744, 1073
CfoI GCGC 1 cut(s) 680
Cfr13I GGNCC 3 cut(s) 495, 857, 881
CseI GACGC 2 cut(s) 721, 858
Csp6I GTAC 5 cut(s) 227, 283, 810, 831, 865
CspCI CAANNNNNGTGG 2 cut(s) 487, 522
CviAII CATG 7 cut(s) 29, 503, 560, 828, 850, 1126, 1154
CviQI GTAC 5 cut(s) 227, 283, 810, 831, 865
DdeI CTNAG 1 cut(s) 642
DpnI GATC 2 cut(s) 1072, 1158
DpnII GATC 2 cut(s) 1070, 1156
EaeI YGGCCR 4 cut(s) 102, 345, 363, 600
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Eco31I GGTCTC 1 cut(s) 1127
Eco47I GGWCC 1 cut(s) 495
Eco57I CTGAAG 1 cut(s) 133
Eco88I CYCGRG 2 cut(s) 219, 1098
EcoO109I RGGNCCY 1 cut(s) 857
EcoRII CCWGG 1 cut(s) 795
FaeI CATG 7 cut(s) 32, 506, 563, 831, 853, 1129, 1157
FaqI GGGAC 3 cut(s) 697, 755, 814
FatI CATG 7 cut(s) 28, 502, 559, 827, 849, 1125, 1153
Fnu4HI GCNGC 6 cut(s) 105, 549, 552, 681, 938, 979
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 6 cut(s) 105, 549, 552, 681, 938, 979
FspBI CTAG 4 cut(s) 593, 663, 956, 1171
GlaI GCGC 1 cut(s) 679
GluI GCNGC 6 cut(s) 105, 549, 552, 681, 938, 979
GsuI CTGGAG 2 cut(s) 99, 834
HaeIII GGCC 7 cut(s) 104, 208, 347, 365, 602, 859, 883
HapII CCGG 1 cut(s) 344
HgaI GACGC 2 cut(s) 721, 858
HhaI GCGC 1 cut(s) 680
Hin1II CATG 7 cut(s) 32, 506, 563, 831, 853, 1129, 1157
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HincII GTYRAC 6 cut(s) 85, 303, 335, 508, 736, 1151
HindII GTYRAC 6 cut(s) 85, 303, 335, 508, 736, 1151
HinfI GANTC 3 cut(s) 81, 1027, 1061
HpaI GTTAAC 1 cut(s) 303
HpaII CCGG 1 cut(s) 344
HphI GGTGA 2 cut(s) 662, 1036
Hpy166II GTNNAC 7 cut(s) 69, 85, 303, 335, 508, 736, 1151
Hpy188I TCNGA 2 cut(s) 825, 947
Hpy188III TCNNGA 3 cut(s) 127, 479, 1100
Hpy8I GTNNAC 7 cut(s) 69, 85, 303, 335, 508, 736, 1151
HpyAV CCTTC 3 cut(s) 406, 631, 1015
HpyCH4III ACNGT 4 cut(s) 163, 787, 805, 1138
HpyCH4IV ACGT 1 cut(s) 305
HpyCH4V TGCA 7 cut(s) 28, 290, 311, 517, 843, 940, 1067
HpyF10VI GCNNNNNNNGC 3 cut(s) 179, 296, 317
HpyF3I CTNAG 1 cut(s) 642
HpySE526I ACGT 1 cut(s) 305
Hsp92II CATG 7 cut(s) 32, 506, 563, 831, 853, 1129, 1157
HspAI GCGC 1 cut(s) 678
KspAI GTTAAC 1 cut(s) 303
Kzo9I GATC 2 cut(s) 1070, 1156
LmnI GCTCC 5 cut(s) 178, 263, 399, 449, 959
Lsp1109I GCAGC 4 cut(s) 560, 563, 692, 924
MaeI CTAG 4 cut(s) 593, 663, 956, 1171
MaeII ACGT 1 cut(s) 305
MaeIII GTNAC 3 cut(s) 270, 614, 1138
MalI GATC 2 cut(s) 1072, 1158
MbiI CCGCTC 1 cut(s) 962
MboI GATC 2 cut(s) 1070, 1156
MboII GAAGA 2 cut(s) 178, 581
MflI RGATCY 1 cut(s) 1070
MlsI TGGCCA 2 cut(s) 365, 602
MluCI AATT 5 cut(s) 277, 391, 630, 687, 1083
MluI ACGCGT 1 cut(s) 867
MluNI TGGCCA 2 cut(s) 365, 602
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 3 cut(s) 360, 746, 906
Mox20I TGGCCA 2 cut(s) 365, 602
MscI TGGCCA 2 cut(s) 365, 602
MseI TTAA 5 cut(s) 18, 50, 302, 395, 434
MslI CAYNNNNRTG 3 cut(s) 221, 564, 848
Msp20I TGGCCA 2 cut(s) 365, 602
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 2 cut(s) 344, 797
MvaI CCWGG 1 cut(s) 797
MvnI CGCG 1 cut(s) 869
MwoI GCNNNNNNNGC 3 cut(s) 179, 296, 317
NciI CCSGG 1 cut(s) 344
NdeII GATC 2 cut(s) 1070, 1156
NlaIII CATG 7 cut(s) 32, 506, 563, 831, 853, 1129, 1157
NlaIV GGNNCC 2 cut(s) 749, 1038
NmuCI GTSAC 2 cut(s) 270, 1138
NspI RCATGY 1 cut(s) 831
OliI CACNNNNGTG 1 cut(s) 221
PciI ACATGT 1 cut(s) 827
PfeI GAWTC 2 cut(s) 1027, 1061
PkrI GCNGC 6 cut(s) 106, 550, 553, 682, 939, 980
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PscI ACATGT 1 cut(s) 827
PshBI ATTAAT 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 795
PspGI CCWGG 1 cut(s) 795
PspN4I GGNNCC 2 cut(s) 749, 1038
PspPI GGNCC 3 cut(s) 495, 857, 881
PstI CTGCAG 1 cut(s) 1069
PstNI CAGNNNCTG 2 cut(s) 744, 1073
PsuI RGATCY 1 cut(s) 1070
RsaI GTAC 5 cut(s) 228, 284, 811, 832, 866
RsaNI GTAC 5 cut(s) 227, 283, 810, 831, 865
RseI CAYNNNNRTG 3 cut(s) 221, 564, 848
SaqAI TTAA 5 cut(s) 18, 50, 302, 395, 434
SatI GCNGC 6 cut(s) 105, 549, 552, 681, 938, 979
Sau3AI GATC 2 cut(s) 1070, 1156
Sau96I GGNCC 3 cut(s) 495, 857, 881
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 2 cut(s) 344, 797
SfcI CTRYAG 2 cut(s) 1065, 1074
SinI GGWCC 1 cut(s) 495
SmiMI CAYNNNNRTG 3 cut(s) 221, 564, 848
Sse9I AATT 5 cut(s) 277, 391, 630, 687, 1083
SsiI CCGC 3 cut(s) 105, 962, 978
SspI AATATT 1 cut(s) 772
SspMI CTAG 4 cut(s) 593, 663, 956, 1171
StyD4I CCNGG 2 cut(s) 342, 795
TaaI ACNGT 4 cut(s) 163, 787, 805, 1138
TaiI ACGT 1 cut(s) 308
TasI AATT 5 cut(s) 277, 391, 630, 687, 1083
TatI WGTACW 2 cut(s) 282, 830
TauI GCSGC 2 cut(s) 107, 981
TfiI GAWTC 2 cut(s) 1027, 1061
Tru1I TTAA 5 cut(s) 18, 50, 302, 395, 434
Tru9I TTAA 5 cut(s) 18, 50, 302, 395, 434
TseFI GTSAC 2 cut(s) 270, 1138
TseI GCWGC 4 cut(s) 548, 551, 680, 937
Tsp45I GTSAC 2 cut(s) 270, 1138
TspDTI ATGAA 1 cut(s) 1142
VpaK11BI GGWCC 1 cut(s) 495
VspI ATTAAT 1 cut(s) 434
XapI RAATTY 2 cut(s) 277, 391
XceI RCATGY 1 cut(s) 831
XspI CTAG 4 cut(s) 593, 663, 956, 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.