Rh1BG356900

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000337
Physical Location & Seq
Forward (+)
48778913 .. 48779571
659 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG356900.1

Sequence Viewer

Length: 354 bp
ATGGTGCAGAATCATGAGGCTTCTTCTAATTTGAAGCCGGTGATTATGATGGTGGTTACCCAGATTTTGTATACTGTGATGAACATAATGTACAAACTAGTTGCAGCAACAGGGATGAACTTGAATGTTTTCGTTGCCTACCGACTGATGTTTTCAGCGGCCTTTATGGTTCCACTGGCTCTGATACTTGAGAGGGCTGCCGCGACACAAAACTTATATATTGTGAGTCTAGCGCTGACGTCACCCACATTTCTTGCAGCCATCTCCAACCTCCTCCCACCCATTACCTTCGTGGTTGCTCTATGTTTTCGGTACATATATATACAGTTTGCACTACTTCCCGAGTACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

117

Amino Acids

13.06

Weight (kDa)

8.85

Isoelectric Point (pI)

26.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 242
AccI GTMKAC 1 cut(s) 71
AccII CGCG 1 cut(s) 203
AciI CCGC 2 cut(s) 158, 201
AcyI GRCGYC 1 cut(s) 239
AfaI GTAC 3 cut(s) 92, 314, 347
AfeI AGCGCT 1 cut(s) 234
AgsI TTSAA 2 cut(s) 34, 124
AhlI ACTAGT 1 cut(s) 97
Ama87I CYCGRG 1 cut(s) 341
Aor51HI AGCGCT 1 cut(s) 234
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 3 cut(s) 104, 197, 257
Asp700I GAANNNNTTC 1 cut(s) 128
AspLEI GCGC 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 52, 234
AvaI CYCGRG 1 cut(s) 341
BbvI GCAGC 3 cut(s) 116, 184, 269
BccI CCATC 2 cut(s) 43, 269
BcuI ACTAGT 1 cut(s) 97
BfaI CTAG 2 cut(s) 98, 230
BfoI RGCGCY 1 cut(s) 236
BisI GCNGC 5 cut(s) 105, 159, 198, 201, 258
BlsI GCNGC 5 cut(s) 106, 160, 199, 202, 259
BmcAI AGTACT 1 cut(s) 347
BmeT110I CYCGRG 1 cut(s) 341
BmiI GGNNCC 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 37
Bse1I ACTGG 1 cut(s) 180
BseGI GGATG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 3 cut(s) 116, 184, 269
BsgI GTGCAG 1 cut(s) 26
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 1 cut(s) 161
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 1 cut(s) 38
BsnI GGCC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 341
Bsp1407I TGTACA 1 cut(s) 90
BspACI CCGC 2 cut(s) 158, 201
BspANI GGCC 1 cut(s) 161
BspFNI CGCG 1 cut(s) 203
BspHI TCATGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 171
BsrFI RCCGGY 1 cut(s) 37
BsrGI TGTACA 1 cut(s) 90
BsrI ACTGG 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 37
BssNAI GTATAC 1 cut(s) 72
BssNI GRCGYC 1 cut(s) 239
Bst1107I GTATAC 1 cut(s) 72
Bst4CI ACNGT 2 cut(s) 76, 327
BstACI GRCGYC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 90
BstEII GGTNACC 1 cut(s) 55
BstF5I GGATG 1 cut(s) 120
BstFNI CGCG 1 cut(s) 203
BstH2I RGCGCY 1 cut(s) 236
BstHHI GCGC 1 cut(s) 235
BstPI GGTNACC 1 cut(s) 55
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 3 cut(s) 116, 184, 269
BstZ17I GTATAC 1 cut(s) 72
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 173
CciI TCATGA 1 cut(s) 13
CfoI GCGC 1 cut(s) 235
Cfr10I RCCGGY 1 cut(s) 37
Csp6I GTAC 3 cut(s) 91, 313, 346
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 1 cut(s) 14
CviJI RGCY 6 cut(s) 20, 37, 161, 179, 197, 260
CviKI_1 RGCY 6 cut(s) 20, 37, 161, 179, 197, 260
CviQI GTAC 3 cut(s) 91, 313, 346
Eco47III AGCGCT 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 341
Eco91I GGTNACC 1 cut(s) 55
EcoO65I GGTNACC 1 cut(s) 55
FaeI CATG 1 cut(s) 17
FatI CATG 1 cut(s) 13
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 5 cut(s) 105, 159, 198, 201, 258
FokI GGATG 1 cut(s) 127
Fsp4HI GCNGC 5 cut(s) 105, 159, 198, 201, 258
FspBI CTAG 2 cut(s) 98, 230
GlaI GCGC 1 cut(s) 234
GluI GCNGC 5 cut(s) 105, 159, 198, 201, 258
HaeII RGCGCY 1 cut(s) 236
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 38
HhaI GCGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 239
Hin1II CATG 1 cut(s) 17
Hin6I GCGC 1 cut(s) 233
HinP1I GCGC 1 cut(s) 233
HinfI GANTC 2 cut(s) 10, 226
HpaII CCGG 1 cut(s) 38
HphI GGTGA 2 cut(s) 52, 234
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 2 cut(s) 14, 341
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 1 cut(s) 298
HpyCH4III ACNGT 2 cut(s) 76, 327
HpyCH4IV ACGT 1 cut(s) 239
HpyCH4V TGCA 4 cut(s) 7, 104, 257, 332
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 239
Hsp92II CATG 1 cut(s) 17
HspAI GCGC 1 cut(s) 233
LpnPI CCDG 4 cut(s) 51, 74, 96, 161
Lsp1109I GCAGC 3 cut(s) 116, 184, 269
MaeI CTAG 2 cut(s) 98, 230
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 55, 240
MboII GAAGA 1 cut(s) 15
MluCI AATT 1 cut(s) 28
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 4 cut(s) 10, 186, 281, 284
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 352
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 38
MvnI CGCG 1 cut(s) 203
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 240
PagI TCATGA 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 5 cut(s) 106, 160, 199, 202, 259
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PspEI GGTNACC 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 171
PsrI GAACNNNNNNTAC 2 cut(s) 74, 106
RsaI GTAC 3 cut(s) 92, 314, 347
RsaNI GTAC 3 cut(s) 91, 313, 346
SaqAI TTAA 1 cut(s) 352
SatI GCNGC 5 cut(s) 105, 159, 198, 201, 258
ScaI AGTACT 1 cut(s) 347
SchI GAGTC 1 cut(s) 235
SetI ASST 3 cut(s) 242, 273, 290
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SpeI ACTAGT 1 cut(s) 97
Sse9I AATT 1 cut(s) 28
SsiI CCGC 2 cut(s) 158, 201
SspMI CTAG 2 cut(s) 98, 230
TaaI ACNGT 2 cut(s) 76, 327
TaiI ACGT 1 cut(s) 242
TasI AATT 1 cut(s) 28
TatI WGTACW 2 cut(s) 90, 345
TauI GCSGC 2 cut(s) 161, 203
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 352
Tru9I TTAA 1 cut(s) 352
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 240
TseI GCWGC 3 cut(s) 104, 197, 257
Tsp45I GTSAC 1 cut(s) 240
TspDTI ATGAA 2 cut(s) 95, 131
TspRI CASTG 1 cut(s) 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XmiI GTMKAC 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 128
XspI CTAG 2 cut(s) 98, 230
ZraI GACGTC 1 cut(s) 240
ZrmI AGTACT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.