RLG00000001853

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
22001162 .. 22004734
3573 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001853

Sequence Viewer

Length: 1188 bp
ATGATGATGGGGGGTACCTGGATTGAGCTTTGCAATGCTCTGCATGGCCTGAAGCCAGTGCTGTTAATGGTGGCGGTTCAGGTAACCTTCGCAGGAGTCAACGTTTTATACAAACTAGCCGCCAACGATGGCATGAACACCAATCTTGTTATTGCTTATCGCTTCCTCTTCGCCACCGCTTTCGTCACTCCTTTTGCTCTTTACTTCGAAAGAAATAGCAGGCCGAAGCTAACCTGGATGGTAGTATTGCAAGCATTTCTGTGTGGCTTGTTTGGGGGGGCAATGTCACAAAACATGTACATTGCAAGCATAGCCTTGACATCTGCGACTTTTGCTTGCGCCATAACCCAACTCATTCCGGCCATAACTTTCGTCTTGGCCGTCATTTTCAGGTTGGAGAAACTGAACTTAAGGAGCATGGGAGGGAAGGCAAAGGTGTTGGGAACATTAATGGGAATAGGTGGAGCAATGCTTCTGACCTTTTATAAAGGCGTGGAAATCAACATGTGGTCCACGCATGTTGACCTTTTGCACAGAAGTCATCAACCAAGCCCCCACGTGGCAGCTCATAACAGTAGAACAGATTACACGGATCGCATATTGAGTTGCCTTCTGGCTCTCGGCAGCTCTTTAGGTTATGCATTGTGGCTAATTATTCAGGCGAAAATGGGAGAGAGATACCCTTGCTATTATTCAAGCACAGCTCTAATGTCACTGATGGGGTCGATACAGTCAGTTGCTTTTGCCCTTTGCATGGAGAGGGATTGGAACCAATGGAAATTAGGTTGGAATATTAGACTCCTTGCTGTTGCATACACGGGGATTGTGGCTACGGGAATAAGTGTGACAATTATAGCATTGTGCGTACGCATGAAAGGCCCATTATTCGTATCCGTTTTCAACCCTCTTGTGCTTGTGCTTGTTGCCTTTGTTGGCTCTTTGCTCTTGGATGAGAAGTTGCACCTTGGAAGCGTGCTAGGATCGATATTAATCGTGGGTGGTTTATATACCGTGCTGTGGGGTAAAAGCAAAGACATAAAGATGATGACACAATCTGTGCCAAAAAGCTTTGAGGAGGAATTTGCAGAATCACTTGAAATTGTTACAAGGTCTCCAGATGACAAAGCCAACAACAACAAGAATGAGAGTGAAACAAAGAATAATGCTCCAAATACTCTGCCAACTTGA

Protein Analysis

396

Amino Acids

43.35

Weight (kDa)

9.08

Isoelectric Point (pI)

37.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 19 - 160 6.1e-17 EamA-like transporter family
EamA PF00892 202 - 339 1.9e-11 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 14
AciI CCGC 3 cut(s) 74, 120, 177
AclI AACGTT 1 cut(s) 102
AclWI GGATC 2 cut(s) 600, 988
AcoI YGGCCR 2 cut(s) 360, 378
AcsI RAATTY 1 cut(s) 1079
AcuI CTGAAG 1 cut(s) 71
AcvI CACGTG 1 cut(s) 559
AfaI GTAC 3 cut(s) 16, 299, 867
AfiI CCNNNNNNNGG 3 cut(s) 559, 754, 1017
AflII CTTAAG 1 cut(s) 409
AflIII ACRYGT 2 cut(s) 294, 504
AgsI TTSAA 3 cut(s) 696, 901, 1097
AjnI CCWGG 2 cut(s) 17, 233
AluBI AGCT 6 cut(s) 28, 229, 566, 627, 704, 1068
AluI AGCT 6 cut(s) 28, 229, 566, 627, 704, 1068
Alw26I GTCTC 1 cut(s) 1116
AlwI GGATC 2 cut(s) 600, 988
AoxI GGCC 5 cut(s) 46, 221, 360, 378, 877
ApeKI GCWGC 2 cut(s) 563, 624
ApoI RAATTY 1 cut(s) 1079
AseI ATTAAT 2 cut(s) 449, 989
Asp718I GGTACC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 341
AspS9I GGNCC 2 cut(s) 510, 878
AsuII TTCGAA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 510
BanI GGYRCC 1 cut(s) 14
BbrPI CACGTG 1 cut(s) 559
BbvI GCAGC 2 cut(s) 575, 636
BccI CCATC 3 cut(s) 122, 232, 712
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 2 cut(s) 19, 235
BciVI GTATCC 1 cut(s) 901
BcoDI GTCTC 1 cut(s) 1116
BfaI CTAG 2 cut(s) 116, 977
BfrI CTTAAG 1 cut(s) 409
BfuI GTATCC 1 cut(s) 901
BisI GCNGC 3 cut(s) 120, 564, 625
BlsI GCNGC 3 cut(s) 121, 565, 626
Bme1390I CCNGG 2 cut(s) 19, 235
Bme18I GGWCC 1 cut(s) 510
BmgT120I GGNCC 2 cut(s) 510, 878
BmiI GGNNCC 2 cut(s) 16, 770
BmrFI CCNGG 2 cut(s) 19, 235
BpmI CTGGAG 1 cut(s) 1098
Bpu14I TTCGAA 1 cut(s) 207
Bsa29I ATCGAT 1 cut(s) 983
BsaAI YACGTR 1 cut(s) 559
BsaBI GATNNNNATC 1 cut(s) 989
BsaI GGTCTC 1 cut(s) 1116
BsaJI CCNNGG 1 cut(s) 964
BsaXI ACNNNNNCTCC 4 cut(s) 87, 117, 1096, 1126
Bsc4I CCNNNNNNNGG 3 cut(s) 559, 754, 1017
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 4 cut(s) 40, 288, 300, 474
Bse8I GATNNNNATC 1 cut(s) 989
BseBI CCWGG 2 cut(s) 19, 235
BseCI ATCGAT 1 cut(s) 983
BseDI CCNNGG 1 cut(s) 964
BseGI GGATG 2 cut(s) 243, 955
BseJI GATNNNNATC 1 cut(s) 989
BseLI CCNNNNNNNGG 3 cut(s) 559, 754, 1017
BseMI GCAATG 4 cut(s) 40, 288, 300, 474
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 1088
BseXI GCAGC 2 cut(s) 575, 636
BshFI GGCC 5 cut(s) 48, 223, 362, 380, 879
BshNI GGYRCC 1 cut(s) 14
BshVI ATCGAT 1 cut(s) 983
BsiSI CCGG 1 cut(s) 359
BsiWI CGTACG 1 cut(s) 865
BslI CCNNNNNNNGG 3 cut(s) 559, 754, 1017
BsmAI GTCTC 1 cut(s) 1116
BsnI GGCC 5 cut(s) 48, 223, 362, 380, 879
Bso31I GGTCTC 1 cut(s) 1116
Bsp119I TTCGAA 1 cut(s) 207
Bsp1407I TGTACA 1 cut(s) 297
Bsp143I GATC 2 cut(s) 592, 980
BspACI CCGC 3 cut(s) 74, 120, 177
BspANI GGCC 5 cut(s) 48, 223, 362, 380, 879
BspDI ATCGAT 1 cut(s) 983
BspLI GGNNCC 2 cut(s) 16, 770
BspPI GGATC 2 cut(s) 600, 988
BspT104I TTCGAA 1 cut(s) 207
BspT107I GGYRCC 1 cut(s) 14
BspTI CTTAAG 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 1116
BsrDI GCAATG 4 cut(s) 40, 288, 300, 474
BsrGI TGTACA 1 cut(s) 297
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 964
BssMI GATC 2 cut(s) 592, 980
BssT1I CCWWGG 1 cut(s) 964
Bst2UI CCWGG 2 cut(s) 19, 235
Bst4CI ACNGT 3 cut(s) 575, 732, 1012
Bst6I CTCTTC 1 cut(s) 173
BstAFI CTTAAG 1 cut(s) 409
BstAUI TGTACA 1 cut(s) 297
BstBAI YACGTR 1 cut(s) 559
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 5 cut(s) 221, 252, 307, 337, 974
BstEII GGTNACC 1 cut(s) 82
BstF5I GGATG 2 cut(s) 243, 955
BstHHI GCGC 1 cut(s) 341
BstKTI GATC 2 cut(s) 595, 983
BstMAI GTCTC 1 cut(s) 1116
BstMBI GATC 2 cut(s) 592, 980
BstMWI GCNNNNNNNGC 3 cut(s) 311, 332, 876
BstNI CCWGG 2 cut(s) 19, 235
BstNSI RCATGY 3 cut(s) 298, 508, 521
BstPI GGTNACC 1 cut(s) 82
BstSCI CCNGG 2 cut(s) 17, 233
BstV1I GCAGC 2 cut(s) 575, 636
Bsu15I ATCGAT 1 cut(s) 983
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 5 cut(s) 48, 223, 362, 380, 879
BsuTUI ATCGAT 1 cut(s) 983
BtsCI GGATG 2 cut(s) 243, 955
BtsIMutI CAGTG 2 cut(s) 63, 713
Cac8I GCNNGC 5 cut(s) 221, 252, 307, 337, 974
CfoI GCGC 1 cut(s) 341
Cfr13I GGNCC 2 cut(s) 510, 878
ClaI ATCGAT 1 cut(s) 983
Csp6I GTAC 3 cut(s) 15, 298, 866
CspCI CAANNNNNGTGG 2 cut(s) 502, 537
CviAII CATG 8 cut(s) 44, 133, 295, 418, 505, 518, 754, 871
CviQI GTAC 3 cut(s) 15, 298, 866
DpnI GATC 2 cut(s) 594, 982
DpnII GATC 2 cut(s) 592, 980
EaeI YGGCCR 2 cut(s) 360, 378
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
Eco130I CCWWGG 1 cut(s) 964
Eco31I GGTCTC 1 cut(s) 1116
Eco47I GGWCC 1 cut(s) 510
Eco57I CTGAAG 1 cut(s) 71
Eco72I CACGTG 1 cut(s) 559
Eco91I GGTNACC 1 cut(s) 82
EcoO65I GGTNACC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 17, 233
EcoT14I CCWWGG 1 cut(s) 964
EcoT22I ATGCAT 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 964
FaeI CATG 8 cut(s) 47, 136, 298, 421, 508, 521, 757, 874
FatI CATG 8 cut(s) 43, 132, 294, 417, 504, 517, 753, 870
Fnu4HI GCNGC 3 cut(s) 120, 564, 625
FokI GGATG 2 cut(s) 250, 962
Fsp4HI GCNGC 3 cut(s) 120, 564, 625
FspBI CTAG 2 cut(s) 116, 977
GlaI GCGC 1 cut(s) 340
GluI GCNGC 3 cut(s) 120, 564, 625
GsuI CTGGAG 1 cut(s) 1098
HaeIII GGCC 5 cut(s) 48, 223, 362, 380, 879
HapII CCGG 1 cut(s) 359
HhaI GCGC 1 cut(s) 341
Hin1II CATG 8 cut(s) 47, 136, 298, 421, 508, 521, 757, 874
Hin6I GCGC 1 cut(s) 339
HinP1I GCGC 1 cut(s) 339
HincII GTYRAC 2 cut(s) 100, 523
HindII GTYRAC 2 cut(s) 100, 523
HindIII AAGCTT 1 cut(s) 1066
HinfI GANTC 3 cut(s) 96, 798, 1088
HpaII CCGG 1 cut(s) 359
Hpy166II GTNNAC 3 cut(s) 100, 513, 523
Hpy188I TCNGA 1 cut(s) 477
Hpy188III TCNNGA 1 cut(s) 1115
Hpy8I GTNNAC 3 cut(s) 100, 513, 523
HpyAV CCTTC 3 cut(s) 97, 421, 620
HpyCH4III ACNGT 3 cut(s) 575, 732, 1012
HpyCH4IV ACGT 2 cut(s) 102, 558
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 332, 876
HpySE526I ACGT 2 cut(s) 102, 558
Hsp92II CATG 8 cut(s) 47, 136, 298, 421, 508, 521, 757, 874
HspAI GCGC 1 cut(s) 339
KpnI GGTACC 1 cut(s) 18
Kzo9I GATC 2 cut(s) 592, 980
LmnI GCTCC 3 cut(s) 414, 464, 1171
Lsp1109I GCAGC 2 cut(s) 575, 636
MaeI CTAG 2 cut(s) 116, 977
MaeII ACGT 2 cut(s) 102, 558
MaeIII GTNAC 6 cut(s) 82, 184, 285, 711, 844, 1102
MalI GATC 2 cut(s) 594, 982
MboI GATC 2 cut(s) 592, 980
MboII GAAGA 1 cut(s) 160
MluCI AATT 5 cut(s) 651, 779, 849, 1079, 1098
MlyI GAGTC 2 cut(s) 105, 792
MmeI TCCRAC 2 cut(s) 375, 767
MnlI CCTC 6 cut(s) 176, 416, 753, 915, 1066, 1069
Mph1103I ATGCAT 1 cut(s) 643
MseI TTAA 4 cut(s) 65, 410, 449, 989
MslI CAYNNNNRTG 2 cut(s) 259, 1040
MspCI CTTAAG 1 cut(s) 409
MspI CCGG 1 cut(s) 359
MspR9I CCNGG 2 cut(s) 19, 235
MvaI CCWGG 2 cut(s) 19, 235
MwoI GCNNNNNNNGC 3 cut(s) 311, 332, 876
NdeII GATC 2 cut(s) 592, 980
NlaIII CATG 8 cut(s) 47, 136, 298, 421, 508, 521, 757, 874
NlaIV GGNNCC 2 cut(s) 16, 770
NmeAIII GCCGAG 1 cut(s) 600
NmuCI GTSAC 4 cut(s) 184, 285, 711, 844
NsiI ATGCAT 1 cut(s) 643
NspI RCATGY 3 cut(s) 298, 508, 521
NspV TTCGAA 1 cut(s) 207
PciI ACATGT 2 cut(s) 294, 504
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PfeI GAWTC 1 cut(s) 1088
Pfl23II CGTACG 1 cut(s) 865
PkrI GCNGC 3 cut(s) 121, 565, 626
PleI GAGTC 2 cut(s) 104, 792
PmaCI CACGTG 1 cut(s) 559
PmlI CACGTG 1 cut(s) 559
PpsI GAGTC 2 cut(s) 104, 792
Ppu21I YACGTR 1 cut(s) 559
PscI ACATGT 2 cut(s) 294, 504
PshBI ATTAAT 2 cut(s) 449, 989
PsiI TTATAA 1 cut(s) 486
Psp1406I AACGTT 1 cut(s) 102
Psp6I CCWGG 2 cut(s) 17, 233
PspCI CACGTG 1 cut(s) 559
PspEI GGTNACC 1 cut(s) 82
PspGI CCWGG 2 cut(s) 17, 233
PspLI CGTACG 1 cut(s) 865
PspN4I GGNNCC 2 cut(s) 16, 770
PspPI GGNCC 2 cut(s) 510, 878
RsaI GTAC 3 cut(s) 16, 299, 867
RsaNI GTAC 3 cut(s) 15, 298, 866
RseI CAYNNNNRTG 2 cut(s) 259, 1040
SaqAI TTAA 4 cut(s) 65, 410, 449, 989
SatI GCNGC 3 cut(s) 120, 564, 625
Sau3AI GATC 2 cut(s) 592, 980
Sau96I GGNCC 2 cut(s) 510, 878
SchI GAGTC 2 cut(s) 105, 792
ScrFI CCNGG 2 cut(s) 19, 235
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 2 cut(s) 259, 1040
SmlI CTYRAG 1 cut(s) 409
SmoI CTYRAG 1 cut(s) 409
Sse9I AATT 5 cut(s) 651, 779, 849, 1079, 1098
SsiI CCGC 3 cut(s) 74, 120, 177
SspI AATATT 1 cut(s) 793
SspMI CTAG 2 cut(s) 116, 977
StyD4I CCNGG 2 cut(s) 17, 233
StyI CCWWGG 1 cut(s) 964
TaaI ACNGT 3 cut(s) 575, 732, 1012
TaiI ACGT 2 cut(s) 105, 561
TaqI TCGA 3 cut(s) 207, 725, 983
TasI AATT 5 cut(s) 651, 779, 849, 1079, 1098
TatI WGTACW 1 cut(s) 297
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 1088
Tru1I TTAA 4 cut(s) 65, 410, 449, 989
Tru9I TTAA 4 cut(s) 65, 410, 449, 989
TscAI CASTG 2 cut(s) 63, 720
TseFI GTSAC 4 cut(s) 184, 285, 711, 844
TseI GCWGC 2 cut(s) 563, 624
Tsp45I GTSAC 4 cut(s) 184, 285, 711, 844
TspDTI ATGAA 2 cut(s) 149, 887
TspGWI ACGGA 2 cut(s) 605, 883
TspRI CASTG 2 cut(s) 63, 720
Vha464I CTTAAG 1 cut(s) 409
VpaK11BI GGWCC 1 cut(s) 510
VspI ATTAAT 2 cut(s) 449, 989
XapI RAATTY 1 cut(s) 1079
XceI RCATGY 3 cut(s) 298, 508, 521
XspI CTAG 2 cut(s) 116, 977
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.