pycom08g19530

WAT1-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
19583730 .. 19586249
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19530.5

Sequence Viewer

Length: 1170 bp
ATGTGTTGTAGTACTAGTGCAGTGCAAGGGTTGAAGCCAGTGATGATGATGCTGGTGGTTCAGACGGCATATGTAGGGATGAATATATTTTACAAACTAGTAGCAGAGGTTGGAACGAACTTCACCATCCTTATTGCCTACCGTAACCTGTTTTCTGCAGCCCTAATGCTTCCTCTTGCTCTTACATTTGAAAGGGCAACATTGACACAAAACTTTTACATAGAGAGCTTAGCCTTAACATCAGCAACGTATGTCGTAGCCTGCAGCAATCTTGTTCCAGTCATCACCTTCATTATAGCACTATGTTTTAGAATTGAGAGGTTAGCACTTGGGACACATACAGGTAGGGCAAAAGTTGTGGGGACACTCTTGTGTATAGGAGGGACAATGCTCTTCACCTTCTACAAAGGCAAACATATTGGCATCTGGTCAACACACGTTAATCTTTTACGTAACTATTCGCATGAAAACAGTCGCGTTGCTTCATTGCACAGACACACTCGCACTCAATCGTTGGGCTCCTTCTTGGCACTTTGCAGTAGCACCTCCTTTGCATCCTGGTTGATATTTCAGACGAAAATGACTAAGAAATACCCTTGCCAATACTCAAGTACGGCTCTGATGTCTGTCATGGCATCAATCCAGTCTGTGGCTTTTGCCCTTTGCAAGGAGAGGGATTGGAGTCAGTGGAAGTTGGGCTGGGATATCAAACTTTTTACTGCTGTGTATTCGGGAGTCGTTACTACTGGATTGGTACTGACTCTAACCGCATGGTGTGTACGAATGCGAGGGCCACTGTTTGTGTCAATTTTCAACCCACTTGGCCTTTTGCTGATAGCCCTAGCAGCGACCTTCTTGTTAAATGAAAAGTTATATTTAGGAAGATTTTTAATGTCTCTATGTATGTATTTTGTTATGCACTGCAGCTTATTAGGAGGGATTCTAATTGTGTGTGGATTATACATGGTGCTGTGGGGTAAAAGCAAGGAGATGAAAATGATGATTCAACAGACACAACAGCCACCGCTTGAAGATCAGTCCCATTCCATTGACATGGCAGCATCTCCAGTTAACAGTGCTGCTATTTGCGATATCGCTGCTCCATCGATCTCAACTCCTCCGATAAACAGACTCAAAGGAAACATTGAGCTTGAACTAGTTACAAAATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

390

Amino Acids

43.1

Weight (kDa)

9.32

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 649
AccII CGCG 1 cut(s) 477
AciI CCGC 2 cut(s) 768, 1025
AfaI GTAC 4 cut(s) 13, 613, 756, 780
AfiI CCNNNNNNNGG 2 cut(s) 649, 667
AflIII ACRYGT 1 cut(s) 436
AgsI TTSAA 6 cut(s) 34, 191, 814, 1007, 1031, 1154
AhlI ACTAGT 3 cut(s) 14, 97, 1156
AjnI CCWGG 1 cut(s) 557
AleI CACNNNNGTG 1 cut(s) 370
AluBI AGCT 3 cut(s) 228, 927, 1150
AluI AGCT 3 cut(s) 228, 927, 1150
Alw26I GTCTC 1 cut(s) 900
AoxI GGCC 2 cut(s) 791, 823
ApeKI GCWGC 7 cut(s) 158, 264, 845, 924, 1058, 1079, 1097
AspS9I GGNCC 1 cut(s) 791
AsuHPI GGTGA 3 cut(s) 115, 277, 388
BanII GRGCYC 1 cut(s) 521
BbvI GCAGC 7 cut(s) 170, 276, 857, 936, 1066, 1070, 1084
BccI CCATC 2 cut(s) 134, 1111
BceAI ACGGC 2 cut(s) 81, 630
BcgI CGANNNNNNTGC 2 cut(s) 1079, 1113
BciT130I CCWGG 1 cut(s) 559
BcoDI GTCTC 1 cut(s) 900
BcuI ACTAGT 3 cut(s) 14, 97, 1156
BfaI CTAG 4 cut(s) 15, 98, 842, 1157
BfmI CTRYAG 3 cut(s) 156, 262, 922
BisI GCNGC 7 cut(s) 159, 265, 846, 925, 1059, 1080, 1098
BlpI GCTNAGC 1 cut(s) 229
BlsI GCNGC 7 cut(s) 160, 266, 847, 926, 1060, 1081, 1099
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 559
BmgT120I GGNCC 1 cut(s) 791
BmiI GGNNCC 1 cut(s) 520
BmrFI CCNGG 1 cut(s) 559
BmsI GCATC 5 cut(s) 39, 432, 563, 644, 1070
BpmI CTGGAG 1 cut(s) 1050
Bpu1102I GCTNAGC 1 cut(s) 229
BpuEI CTTGAG 1 cut(s) 592
Bsa29I ATCGAT 1 cut(s) 1106
BsaAI YACGTR 1 cut(s) 452
Bsc4I CCNNNNNNNGG 2 cut(s) 649, 667
Bse1I ACTGG 5 cut(s) 38, 278, 643, 751, 1067
Bse3DI GCAATG 1 cut(s) 485
BseBI CCWGG 1 cut(s) 559
BseCI ATCGAT 1 cut(s) 1106
BseGI GGATG 3 cut(s) 84, 126, 554
BseLI CCNNNNNNNGG 2 cut(s) 649, 667
BseMI GCAATG 1 cut(s) 485
BseNI ACTGG 5 cut(s) 38, 278, 643, 751, 1067
BseRI GAGGAG 1 cut(s) 1107
BseXI GCAGC 7 cut(s) 170, 276, 857, 936, 1066, 1070, 1084
BseYI CCCAGC 1 cut(s) 699
BsgI GTGCAG 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 477
BshFI GGCC 2 cut(s) 793, 825
BshVI ATCGAT 1 cut(s) 1106
BslFI GGGAC 4 cut(s) 346, 376, 397, 1024
BslI CCNNNNNNNGG 2 cut(s) 649, 667
BsmAI GTCTC 1 cut(s) 900
BsmFI GGGAC 4 cut(s) 346, 376, 397, 1024
BsmI GAATGC 1 cut(s) 789
BsnI GGCC 2 cut(s) 793, 825
Bsp1286I GDGCHC 1 cut(s) 521
Bsp143I GATC 2 cut(s) 1033, 1107
Bsp1720I GCTNAGC 1 cut(s) 229
BspACI CCGC 2 cut(s) 768, 1025
BspANI GGCC 2 cut(s) 793, 825
BspDI ATCGAT 1 cut(s) 1106
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 520
BspMAI CTGCAG 3 cut(s) 160, 266, 926
BspQI GCTCTTC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 485
BsrI ACTGG 5 cut(s) 38, 278, 643, 751, 1067
BssMI GATC 2 cut(s) 1033, 1107
Bst2UI CCWGG 1 cut(s) 559
Bst4CI ACNGT 4 cut(s) 143, 473, 798, 1076
Bst6I CTCTTC 1 cut(s) 398
BstBAI YACGTR 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 229, 585
BstENI CCTNNNNNAGG 1 cut(s) 665
BstF5I GGATG 3 cut(s) 84, 126, 554
BstFNI CGCG 1 cut(s) 477
BstKTI GATC 2 cut(s) 1036, 1110
BstMAI GTCTC 1 cut(s) 900
BstMBI GATC 2 cut(s) 1033, 1107
BstMWI GCNNNNNNNGC 1 cut(s) 845
BstNI CCWGG 1 cut(s) 559
BstSCI CCNGG 1 cut(s) 557
BstSFI CTRYAG 3 cut(s) 156, 262, 922
BstSNI TACGTA 1 cut(s) 452
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 7 cut(s) 170, 276, 857, 936, 1066, 1070, 1084
BstXI CCANNNNNNTGG 1 cut(s) 1054
Bsu15I ATCGAT 1 cut(s) 1106
BsuRI GGCC 2 cut(s) 793, 825
BsuTUI ATCGAT 1 cut(s) 1106
BtsCI GGATG 3 cut(s) 84, 126, 554
BtsI GCAGTG 2 cut(s) 27, 919
BtsIMutI CAGTG 6 cut(s) 27, 45, 692, 794, 919, 1081
Cac8I GCNNGC 1 cut(s) 262
Cfr13I GGNCC 1 cut(s) 791
ClaI ATCGAT 1 cut(s) 1106
Csp6I GTAC 4 cut(s) 12, 612, 755, 779
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 5 cut(s) 464, 631, 771, 964, 1054
CviQI GTAC 4 cut(s) 12, 612, 755, 779
DdeI CTNAG 2 cut(s) 229, 585
DpnI GATC 2 cut(s) 1035, 1109
DpnII GATC 2 cut(s) 1033, 1107
Eam1104I CTCTTC 1 cut(s) 398
EarI CTCTTC 1 cut(s) 398
Eco105I TACGTA 1 cut(s) 452
Eco24I GRGCYC 1 cut(s) 521
Eco32I GATATC 2 cut(s) 706, 1093
EcoNI CCTNNNNNAGG 1 cut(s) 665
EcoRII CCWGG 1 cut(s) 557
EcoRV GATATC 2 cut(s) 706, 1093
EcoT38I GRGCYC 1 cut(s) 521
FaeI CATG 5 cut(s) 467, 634, 774, 967, 1057
FaqI GGGAC 4 cut(s) 346, 376, 397, 1024
FatI CATG 5 cut(s) 463, 630, 770, 963, 1053
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 7 cut(s) 159, 265, 846, 925, 1059, 1080, 1098
FokI GGATG 3 cut(s) 91, 113, 541
FriOI GRGCYC 1 cut(s) 521
Fsp4HI GCNGC 7 cut(s) 159, 265, 846, 925, 1059, 1080, 1098
FspBI CTAG 4 cut(s) 15, 98, 842, 1157
GluI GCNGC 7 cut(s) 159, 265, 846, 925, 1059, 1080, 1098
GsaI CCCAGC 1 cut(s) 703
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 2 cut(s) 793, 825
Hin1II CATG 5 cut(s) 467, 634, 774, 967, 1057
HincII GTYRAC 2 cut(s) 432, 1072
HindII GTYRAC 2 cut(s) 432, 1072
HinfI GANTC 6 cut(s) 682, 735, 760, 940, 1003, 1131
HpaI GTTAAC 1 cut(s) 1072
HphI GGTGA 3 cut(s) 115, 277, 388
Hpy166II GTNNAC 3 cut(s) 432, 779, 1072
Hpy188I TCNGA 4 cut(s) 63, 573, 621, 1122
Hpy188III TCNNGA 1 cut(s) 732
Hpy8I GTNNAC 3 cut(s) 432, 779, 1072
HpyAV CCTTC 4 cut(s) 298, 409, 532, 862
HpyCH4III ACNGT 4 cut(s) 143, 473, 798, 1076
HpyCH4IV ACGT 3 cut(s) 248, 438, 451
HpyF10VI GCNNNNNNNGC 1 cut(s) 845
HpyF3I CTNAG 2 cut(s) 229, 585
HpySE526I ACGT 3 cut(s) 248, 438, 451
Hsp92II CATG 5 cut(s) 467, 634, 774, 967, 1057
KspAI GTTAAC 1 cut(s) 1072
Kzo9I GATC 2 cut(s) 1033, 1107
LguI GCTCTTC 1 cut(s) 398
LmnI GCTCC 2 cut(s) 524, 1105
Lsp1109I GCAGC 7 cut(s) 170, 276, 857, 936, 1066, 1070, 1084
LweI GCATC 5 cut(s) 39, 432, 563, 644, 1070
MaeI CTAG 4 cut(s) 15, 98, 842, 1157
MaeII ACGT 3 cut(s) 248, 438, 451
MaeIII GTNAC 4 cut(s) 143, 452, 739, 1159
MalI GATC 2 cut(s) 1035, 1109
MboI GATC 2 cut(s) 1033, 1107
MboII GAAGA 3 cut(s) 385, 894, 1043
MhlI GDGCHC 1 cut(s) 521
MluCI AATT 3 cut(s) 312, 807, 945
MlyI GAGTC 4 cut(s) 691, 744, 754, 1125
MmeI TCCRAC 1 cut(s) 91
MnlI CCTC 9 cut(s) 100, 183, 312, 374, 556, 666, 782, 929, 1128
MseI TTAA 5 cut(s) 236, 441, 860, 890, 1071
MslI CAYNNNNRTG 2 cut(s) 370, 1052
MspR9I CCNGG 1 cut(s) 559
Mva1269I GAATGC 1 cut(s) 789
MvaI CCWGG 1 cut(s) 559
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 1 cut(s) 845
NdeI CATATG 1 cut(s) 70
NdeII GATC 2 cut(s) 1033, 1107
NlaIII CATG 5 cut(s) 467, 634, 774, 967, 1057
NlaIV GGNNCC 1 cut(s) 520
OliI CACNNNNGTG 1 cut(s) 370
PciSI GCTCTTC 1 cut(s) 398
PctI GAATGC 1 cut(s) 789
PfeI GAWTC 2 cut(s) 940, 1003
PflMI CCANNNNNTGG 1 cut(s) 649
PkrI GCNGC 7 cut(s) 160, 266, 847, 926, 1060, 1081, 1099
PleI GAGTC 4 cut(s) 690, 743, 754, 1125
PpsI GAGTC 4 cut(s) 690, 743, 754, 1125
Ppu21I YACGTR 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 699
PspGI CCWGG 1 cut(s) 557
PspN4I GGNNCC 1 cut(s) 520
PspPI GGNCC 1 cut(s) 791
PstI CTGCAG 3 cut(s) 160, 266, 926
RsaI GTAC 4 cut(s) 13, 613, 756, 780
RsaNI GTAC 4 cut(s) 12, 612, 755, 779
RseI CAYNNNNRTG 2 cut(s) 370, 1052
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 5 cut(s) 236, 441, 860, 890, 1071
SatI GCNGC 7 cut(s) 159, 265, 846, 925, 1059, 1080, 1098
Sau3AI GATC 2 cut(s) 1033, 1107
Sau96I GGNCC 1 cut(s) 791
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 4 cut(s) 691, 744, 754, 1125
ScrFI CCNGG 1 cut(s) 559
SduI GDGCHC 1 cut(s) 521
SfaNI GCATC 5 cut(s) 39, 432, 563, 644, 1070
SfcI CTRYAG 3 cut(s) 156, 262, 922
SmiMI CAYNNNNRTG 2 cut(s) 370, 1052
SmlI CTYRAG 1 cut(s) 607
SmoI CTYRAG 1 cut(s) 607
SnaBI TACGTA 1 cut(s) 452
SpeI ACTAGT 3 cut(s) 14, 97, 1156
Sse9I AATT 3 cut(s) 312, 807, 945
SsiI CCGC 2 cut(s) 768, 1025
SspMI CTAG 4 cut(s) 15, 98, 842, 1157
StyD4I CCNGG 1 cut(s) 557
TaaI ACNGT 4 cut(s) 143, 473, 798, 1076
TaiI ACGT 3 cut(s) 251, 441, 454
TaqI TCGA 1 cut(s) 1106
TasI AATT 3 cut(s) 312, 807, 945
TatI WGTACW 1 cut(s) 11
TfiI GAWTC 2 cut(s) 940, 1003
Tru1I TTAA 5 cut(s) 236, 441, 860, 890, 1071
Tru9I TTAA 5 cut(s) 236, 441, 860, 890, 1071
TscAI CASTG 6 cut(s) 27, 45, 692, 801, 926, 1081
TseI GCWGC 7 cut(s) 158, 264, 845, 924, 1058, 1079, 1097
TspDTI ATGAA 6 cut(s) 95, 280, 474, 480, 879, 1007
TspRI CASTG 6 cut(s) 27, 45, 692, 801, 926, 1081
Van91I CCANNNNNTGG 1 cut(s) 649
XagI CCTNNNNNAGG 1 cut(s) 665
XspI CTAG 4 cut(s) 15, 98, 842, 1157
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.