Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000337

Physical Location & Seq

Genomic Coordinates Reverse (-)

20654896 .. 20657995

Gene Structure 3100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0226300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGCGCGCCTTTTTTTACAGACCCGCCCAGTTTAGCCTGTTCAAAACCGCAACCAGACTTCGTTTTTATAGAACCCAGATTAGATTTCCGAACACCCAAAATGCAAAACTCACTTGTGATGATTCAGAGCTGCTTTATTATCTGTCACGACGTATGTTTCAAGATGCACGCCACCTGCTTGAGAAAATGCCTAGCAGAGATGTTCATGACCGCATTGTGCGTTGGACTTGTTTGGTTACTAAGTTCTCGAGAGGCGGTTGGGTCGATGAGGCTCGGGTGCTGTTTGATATAATGCCGGAGAGAAATGTGGTTACTTATAATGCTATGCTGTCGGGGTATGTGCAGTCAGGGAGGTTGAGTGAGGGTTGTCAGTTTTTTGAGGAGATGCCGGAGAGGAATGTGGTGTCGTGGACTTCGATGCTGTGTGGGTTGGCTGGTGCGGGGAGGATTGAGGAGGCGAGGCGGTTGTTTGAGGAAATGCCAGAGAGGAATGTTGTTTCTTGGAATTCTATGATTGCTGGGTTGGTTAAGAATGGGGATTTGGAGGGAGCAAGGGAGGTTTTTGACCGGATGCGGATGAAGAATGTTGTTTCTTGTAATGCTATGATTGGTGGGTATGCGGAGCATTGTAGAATGGATGAGGCCAGAGCTTTGTTTGATGGGATGCTGGACAGGAATGTGATTACTTGGACTAGTATGATATCTGGTTATTGTAGGTCTGGCAATGTGGATGAAGGGTATGCTTTGTTTTGCAAAATGCCAGAGAGGAATGTTGTTTCTTGGACAGCCATGATTGGTGGCTTTGCTTGGAATGGATTTTATAAAGAAGCTCTATTGTTATTCCTTGAATGGAATGGGAACTATGAAACAAGACCAAATGGAGAGACGTTCATATCGCTTGTATATGCTTGTGCTGGTATTGGGTTGCCTCATCTTGGAAAGCAACTACATGCTCAGTTGATTGTCAACAATTGGGACCATGATGATTATGATGGCAGGCTATCAAAGAGCCTCATTCACATGTACTCGGCCTATGGTGTCATGGATTATGCAGATTTTCTGTTTATGAAGCATTCAAATACTCCTAGTGTTCAGTCTTGTAATTCTATGATTAATGGTTACTTACAGATTGGGCAACTAGAACAGGCTCAGAATCTCTTTGACAGACTACCAATCCGAGACAAGATCTCTTGGACGTCTATGATCACTGGGTATTTTAATGTTGGGAAAGTATCAAAGGCTTGTTATCTGTTCCAAATTATGCCAGATAGGGATGCAATTTCATGGACAGCGATGATTTCAGGGCACGTCCAAAATGAGCTTTTTGCAGAAGCCACTGATATCTTCTTTAAAATGCATTCAGAAGGTGTTTCGCCTCTGAATTCAACATATTCAGTTCTTCTTGGAGTTGCTGGTGCAATGTCATATCTTGATTCTGGGAGACAGTTCCATGGCCTTCTGATAAAAACACATTATGAACTTGACTTGTTTATTAGTAACTCACTGATCTCTATGTATGCCAAATGTGGGGAGATAGATGACGCTTACCGTGCATTCTCAAACATGAGTTTGCGGGATTTGATTTCTTGGAATTCCATGATCATGGGGTTTTCTGACCATGGGCATGCAAATGAAGCTCTGAAGATCTTTGAAGCAATGGAACAATCTGGGGCTCACCTGAATTCTGTAACTTTTTTGGGCATCCTGTCAGCATGTAGCCATGCAGGGCTAGTCCATAGAGGATGGGAGTTTTTTAATGCCATGAGTGATGTTTATGGAATTCAACCAGCTTCGGAGCATTGCATTTGTATGATTAATCTTTTGGGTAGAGCTGGGAAGGTAAAGGAAGCCCAAGAATTGGTTTGGAGGCTACCTTTCAAACCAGATCCTGCTGTTTGGGGAGCATTGCTTGGTATATGTGGGCTCGGTAAGACAAATGCCGAGGTTGCTAAATATGCGGCCAAACAACTCCTGGAGCTGGATCCCTTAAATGCACCAGCCCATGTGGTCCTTTGTAACATATATGCAGCAAATGGTATGCATATTGAGGAAAAATCACTGAGAAGGGAGATGGGGTTGAAAGGAGTTAGAAAGGTTCCTGGGTGCAGTTGGATTCTGGTGCAAGGGAGAGTTAATGTATTCCTCTCTGGAGATAAATTACACCCAGATGTTGAGGAGATGCTGTCAATCCTATTTGGCACCACTGGTGAATCACAAAAACAGTTTAGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

744

Amino Acids

84.09

Weight (kDa)

6.41

Isoelectric Point (pI)

39.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	101 - 134	4.4e-08	PPR repeat family
PPR_1	PF12854	101 - 129	2.8e-06	PPR repeat
PPR	PF01535	104 - 134	6.2e-08	PPR repeat
PPR_2	PF13041	132 - 165	4.6e-07	PPR repeat family
PPR	PF01535	135 - 165	5e-07	PPR repeat
PPR_2	PF13041	163 - 196	1.6e-07	PPR repeat family
PPR_1	PF12854	163 - 192	7.4e-06	PPR repeat
PPR	PF01535	166 - 196	7.1e-09	PPR repeat
PPR_2	PF13041	194 - 227	2.3e-06	PPR repeat family
PPR_1	PF12854	223 - 253	6.2e-10	PPR repeat
PPR_2	PF13041	225 - 258	3.5e-08	PPR repeat family
PPR	PF01535	228 - 258	1.4e-09	PPR repeat
PPR_2	PF13041	425 - 468	1e-06	PPR repeat family
PPR_2	PF13041	526 - 573	2.4e-09	PPR repeat family
PPR	PF01535	528 - 557	1.8e-06	PPR repeat
E_motif	PF20431	646 - 705	2.4e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25270 AT1G68170 AT1G68170
fragaria_vesca	FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica	MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica	Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis	pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis	RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata	RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora	Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii	Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa	Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha	Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana	Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	318, 822
AarI	CACCTGC	1 cut(s)	183
AatII	GACGTC	1 cut(s)	1199
Acc36I	ACCTGC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	2198
AccB7I	CCANNNNNTGG	1 cut(s)	1858
AccII	CGCG	1 cut(s)	6
AclWI	GGATC	3 cut(s)	1880, 1976, 1989
AcoI	YGGCCR	1 cut(s)	1959
AcsI	RAATTY	5 cut(s)	505, 1381, 1591, 1681, 1779
AcuI	CTGAAG	1 cut(s)	1661
AcyI	GRCGYC	1 cut(s)	1196
AfaI	GTAC	1 cut(s)	1025
AfiI	CCNNNNNNNGG	4 cut(s)	935, 1527, 1858, 1978
AflIII	ACRYGT	1 cut(s)	1020
AgsI	TTSAA	9 cut(s)	43, 161, 848, 1077, 1386, 1652, 1784, 1879, 2080
AhlI	ACTAGT	1 cut(s)	692
AjiI	CACGTC	1 cut(s)	1309
AjnI	CCWGG	2 cut(s)	1971, 2098
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	8 cut(s)	130, 650, 830, 1321, 1637, 1790, 1832, 1978
AluI	AGCT	8 cut(s)	130, 650, 830, 1321, 1637, 1790, 1832, 1978
Alw26I	GTCTC	3 cut(s)	878, 1173, 1435
AlwI	GGATC	3 cut(s)	1880, 1976, 1989
AlwNI	CAGNNNCTG	1 cut(s)	1889
Ama87I	CYCGRG	2 cut(s)	247, 273
AoxI	GGCC	4 cut(s)	642, 1029, 1453, 1959
ApeKI	GCWGC	2 cut(s)	130, 2027
ApoI	RAATTY	5 cut(s)	505, 1381, 1591, 1681, 1779
AseI	ATTAAT	2 cut(s)	1113, 1815
AspLEI	GCGC	2 cut(s)	6, 8
AspS9I	GGNCC	2 cut(s)	976, 2008
AsuHPI	GGTGA	2 cut(s)	1667, 2219
AvaI	CYCGRG	2 cut(s)	247, 273
AvaII	GGWCC	2 cut(s)	976, 2008
BaeGI	GKGCMC	1 cut(s)	1308
BamHI	GGATCC	1 cut(s)	1981
BanI	GGYRCC	1 cut(s)	2198
BanII	GRGCYC	2 cut(s)	1675, 1926
BbvI	GCAGC	2 cut(s)	117, 2039
BccI	CCATC	4 cut(s)	653, 986, 1737, 2065
BciT130I	CCWGG	2 cut(s)	1973, 2100
BclI	TGATCA	2 cut(s)	1203, 1599
BcoDI	GTCTC	3 cut(s)	878, 1173, 1435
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	5 cut(s)	192, 693, 1086, 1139, 1730
BfuAI	ACCTGC	1 cut(s)	183
BglII	AGATCT	2 cut(s)	1185, 1644
BisI	GCNGC	3 cut(s)	131, 1959, 2028
BlsI	GCNGC	3 cut(s)	132, 1960, 2029
Bme1390I	CCNGG	2 cut(s)	1973, 2100
Bme18I	GGWCC	2 cut(s)	976, 2008
BmeT110I	CYCGRG	2 cut(s)	247, 273
BmgBI	CACGTC	1 cut(s)	1309
BmgT120I	GGNCC	2 cut(s)	976, 2008
BmiI	GGNNCC	4 cut(s)	977, 1983, 2097, 2200
BmrFI	CCNGG	2 cut(s)	1973, 2100
BmrI	ACTGGG	2 cut(s)	22, 1218
BmsI	GCATC	8 cut(s)	154, 375, 408, 561, 654, 1264, 1710, 2169
BmuI	ACTGGG	2 cut(s)	22, 1218
BpmI	CTGGAG	2 cut(s)	1994, 2169
BpuEI	CTTGAG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	1196
BsaJI	CCNNGG	4 cut(s)	1450, 1618, 1941, 2099
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	6 cut(s)	343, 373, 2060, 2090, 2168, 2198
Bsc4I	CCNNNNNNNGG	4 cut(s)	935, 1527, 1858, 1978
Bse1I	ACTGG	3 cut(s)	28, 1213, 2209
Bse3DI	GCAATG	5 cut(s)	730, 1425, 1662, 1798, 1904
BseBI	CCWGG	2 cut(s)	1973, 2100
BseDI	CCNNGG	4 cut(s)	1450, 1618, 1941, 2099
BseGI	GGATG	8 cut(s)	576, 582, 643, 669, 736, 1279, 1701, 1748
BseLI	CCNNNNNNNGG	4 cut(s)	935, 1527, 1858, 1978
BseMI	GCAATG	5 cut(s)	730, 1425, 1662, 1798, 1904
BseMII	CTCAG	3 cut(s)	968, 1163, 2051
BseNI	ACTGG	3 cut(s)	28, 1213, 2209
BsePI	GCGCGC	1 cut(s)	4
BseRI	GAGGAG	3 cut(s)	395, 467, 2189
BseSI	GKGCMC	1 cut(s)	1308
BseXI	GCAGC	2 cut(s)	117, 2039
BseYI	CCCAGC	2 cut(s)	518, 1832
BsgI	GTGCAG	2 cut(s)	362, 2125
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	4 cut(s)	644, 1031, 1455, 1961
BshNI	GGYRCC	1 cut(s)	2198
BsiHKCI	CYCGRG	2 cut(s)	247, 273
BsiSI	CCGG	3 cut(s)	296, 389, 568
BslFI	GGGAC	1 cut(s)	989
BslI	CCNNNNNNNGG	4 cut(s)	935, 1527, 1858, 1978
BsmAI	GTCTC	3 cut(s)	878, 1173, 1435
BsmBI	CGTCTC	1 cut(s)	878
BsmFI	GGGAC	1 cut(s)	989
BsmI	GAATGC	3 cut(s)	1072, 1357, 1553
BsnI	GGCC	4 cut(s)	644, 1031, 1455, 1961
BsoBI	CYCGRG	2 cut(s)	247, 273
Bsp1286I	GDGCHC	3 cut(s)	1308, 1675, 1926
Bsp143I	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
Bsp19I	CCATGG	2 cut(s)	1450, 1618
BspANI	GGCC	4 cut(s)	644, 1031, 1455, 1961
BspCNI	CTCAG	3 cut(s)	967, 1162, 2052
BspFNI	CGCG	1 cut(s)	6
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	4 cut(s)	977, 1983, 2097, 2200
BspMI	ACCTGC	1 cut(s)	183
BspPI	GGATC	3 cut(s)	1880, 1976, 1989
BspT107I	GGYRCC	1 cut(s)	2198
BsrDI	GCAATG	5 cut(s)	730, 1425, 1662, 1798, 1904
BsrI	ACTGG	3 cut(s)	28, 1213, 2209
BssECI	CCNNGG	4 cut(s)	1450, 1618, 1941, 2099
BssHII	GCGCGC	1 cut(s)	4
BssMI	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
BssNI	GRCGYC	1 cut(s)	1196
BssT1I	CCWWGG	2 cut(s)	1450, 1618
Bst2UI	CCWGG	2 cut(s)	1973, 2100
Bst4CI	ACNGT	3 cut(s)	1446, 1550, 2223
BstACI	GRCGYC	1 cut(s)	1196
BstC8I	GCNNGC	4 cut(s)	6, 169, 998, 1626
BstDEI	CTNAG	4 cut(s)	240, 954, 1149, 2060
BstDSI	CCRYGG	2 cut(s)	1450, 1618
BstF5I	GGATG	8 cut(s)	576, 582, 643, 669, 736, 1279, 1701, 1748
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 8
BstKTI	GATC	7 cut(s)	1188, 1206, 1509, 1602, 1647, 1888, 1984
BstMAI	GTCTC	3 cut(s)	878, 1173, 1435
BstMBI	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
BstMWI	GCNNNNNNNGC	4 cut(s)	1550, 1634, 1946, 1955
BstNI	CCWGG	2 cut(s)	1973, 2100
BstNSI	RCATGY	4 cut(s)	953, 1024, 1628, 1716
BstSCI	CCNGG	2 cut(s)	1971, 2098
BstSLI	GKGCMC	1 cut(s)	1308
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	2 cut(s)	117, 2039
BstX2I	RGATCY	4 cut(s)	1185, 1644, 1885, 1981
BstXI	CCANNNNNNTGG	1 cut(s)	1603
BstYI	RGATCY	4 cut(s)	1185, 1644, 1885, 1981
BsuRI	GGCC	4 cut(s)	644, 1031, 1455, 1961
BtgI	CCRYGG	2 cut(s)	1450, 1618
BtgZI	GCGATG	1 cut(s)	1307
BtrI	CACGTC	1 cut(s)	1309
BtsCI	GGATG	8 cut(s)	576, 582, 643, 669, 736, 1279, 1701, 1748
BtsIMutI	CAGTG	5 cut(s)	1206, 1335, 1502, 2057, 2202
BveI	ACCTGC	1 cut(s)	183
Cac8I	GCNNGC	4 cut(s)	6, 169, 998, 1626
CaiI	CAGNNNCTG	1 cut(s)	1889
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	2 cut(s)	6, 8
Cfr13I	GGNCC	2 cut(s)	976, 2008
CseI	GACGC	1 cut(s)	1550
Csp6I	GTAC	1 cut(s)	1024
CviQI	GTAC	1 cut(s)	1024
DdeI	CTNAG	4 cut(s)	240, 954, 1149, 2060
DpnI	GATC	7 cut(s)	1187, 1205, 1508, 1601, 1646, 1887, 1983
DpnII	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
DraI	TTTAAA	1 cut(s)	1351
EaeI	YGGCCR	1 cut(s)	1959
Eco130I	CCWWGG	2 cut(s)	1450, 1618
Eco24I	GRGCYC	2 cut(s)	1675, 1926
Eco32I	GATATC	2 cut(s)	702, 1342
Eco47I	GGWCC	2 cut(s)	976, 2008
Eco57I	CTGAAG	1 cut(s)	1661
Eco88I	CYCGRG	2 cut(s)	247, 273
EcoRI	GAATTC	5 cut(s)	505, 1381, 1591, 1681, 1779
EcoRII	CCWGG	2 cut(s)	1971, 2098
EcoRV	GATATC	2 cut(s)	702, 1342
EcoT14I	CCWWGG	2 cut(s)	1450, 1618
EcoT22I	ATGCAT	2 cut(s)	1359, 2043
EcoT38I	GRGCYC	2 cut(s)	1675, 1926
ErhI	CCWWGG	2 cut(s)	1450, 1618
Esp3I	CGTCTC	1 cut(s)	878
FaqI	GGGAC	1 cut(s)	989
FauI	CCCGC	3 cut(s)	31, 433, 1566
FbaI	TGATCA	2 cut(s)	1203, 1599
Fnu4HI	GCNGC	3 cut(s)	131, 1959, 2028
FokI	GGATG	8 cut(s)	583, 589, 650, 676, 743, 1286, 1688, 1755
FriOI	GRGCYC	2 cut(s)	1675, 1926
Fsp4HI	GCNGC	3 cut(s)	131, 1959, 2028
FspBI	CTAG	5 cut(s)	192, 693, 1086, 1139, 1730
GlaI	GCGC	2 cut(s)	5, 7
GluI	GCNGC	3 cut(s)	131, 1959, 2028
GsaI	CCCAGC	2 cut(s)	522, 1836
GsuI	CTGGAG	2 cut(s)	1994, 2169
HaeIII	GGCC	4 cut(s)	644, 1031, 1455, 1961
HapII	CCGG	3 cut(s)	296, 389, 568
HgaI	GACGC	1 cut(s)	1550
HhaI	GCGC	2 cut(s)	6, 8
Hin1I	GRCGYC	1 cut(s)	1196
Hin6I	GCGC	2 cut(s)	4, 6
HinP1I	GCGC	2 cut(s)	4, 6
HincII	GTYRAC	1 cut(s)	967
HindII	GTYRAC	1 cut(s)	967
HinfI	GANTC	5 cut(s)	122, 1153, 1433, 2113, 2210
HpaII	CCGG	3 cut(s)	296, 389, 568
HphI	GGTGA	2 cut(s)	1667, 2219
Hpy166II	GTNNAC	2 cut(s)	411, 967
Hpy188III	TCNNGA	7 cut(s)	147, 161, 206, 247, 249, 1430, 2148
Hpy8I	GTNNAC	2 cut(s)	411, 967
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	5 cut(s)	728, 1358, 1466, 1831, 2058
HpyCH4III	ACNGT	3 cut(s)	1446, 1550, 2223
HpyCH4IV	ACGT	4 cut(s)	151, 887, 1196, 1308
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1550, 1634, 1946, 1955
HpyF3I	CTNAG	4 cut(s)	240, 954, 1149, 2060
HpySE526I	ACGT	4 cut(s)	151, 887, 1196, 1308
Hsp92I	GRCGYC	1 cut(s)	1196
HspAI	GCGC	2 cut(s)	4, 6
Ksp22I	TGATCA	2 cut(s)	1203, 1599
Kzo9I	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
LmnI	GCTCC	5 cut(s)	548, 622, 1795, 1901, 1975
Lsp1109I	GCAGC	2 cut(s)	117, 2039
LweI	GCATC	8 cut(s)	154, 375, 408, 561, 654, 1264, 1710, 2169
MaeI	CTAG	5 cut(s)	192, 693, 1086, 1139, 1730
MaeII	ACGT	4 cut(s)	151, 887, 1196, 1308
MaeIII	GTNAC	7 cut(s)	144, 235, 310, 1118, 1496, 1687, 2015
MalI	GATC	7 cut(s)	1187, 1205, 1508, 1601, 1646, 1887, 1983
MboI	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
MboII	GAAGA	4 cut(s)	592, 1336, 1391, 1654
MfeI	CAATTG	1 cut(s)	970
MflI	RGATCY	4 cut(s)	1185, 1644, 1885, 1981
MhlI	GDGCHC	3 cut(s)	1308, 1675, 1926
MmeI	TCCRAC	2 cut(s)	203, 2090
Mph1103I	ATGCAT	2 cut(s)	1359, 2043
MseI	TTAA	8 cut(s)	528, 1113, 1218, 1350, 1755, 1815, 1988, 2133
MslI	CAYNNNNRTG	6 cut(s)	1019, 1601, 1623, 1629, 1808, 2166
MspI	CCGG	3 cut(s)	296, 389, 568
MspR9I	CCNGG	2 cut(s)	1973, 2100
MunI	CAATTG	1 cut(s)	970
Mva1269I	GAATGC	3 cut(s)	1072, 1357, 1553
MvaI	CCWGG	2 cut(s)	1973, 2100
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	4 cut(s)	1550, 1634, 1946, 1955
NcoI	CCATGG	2 cut(s)	1450, 1618
NdeII	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
NlaIV	GGNNCC	4 cut(s)	977, 1983, 2097, 2200
NmeAIII	GCCGAG	2 cut(s)	1007, 1966
NmuCI	GTSAC	1 cut(s)	144
NsiI	ATGCAT	2 cut(s)	1359, 2043
NspI	RCATGY	4 cut(s)	953, 1024, 1628, 1716
PaeI	GCATGC	1 cut(s)	1628
PaeR7I	CTCGAG	1 cut(s)	247
PagI	TCATGA	1 cut(s)	205
PaqCI	CACCTGC	1 cut(s)	183
PauI	GCGCGC	1 cut(s)	4
PciI	ACATGT	1 cut(s)	1020
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PctI	GAATGC	3 cut(s)	1072, 1357, 1553
PfeI	GAWTC	5 cut(s)	122, 1153, 1433, 2113, 2210
PflMI	CCANNNNNTGG	1 cut(s)	1858
PfoI	TCCNGGA	1 cut(s)	1971
PkrI	GCNGC	3 cut(s)	132, 1960, 2029
PscI	ACATGT	1 cut(s)	1020
PshBI	ATTAAT	2 cut(s)	1113, 1815
PsiI	TTATAA	2 cut(s)	318, 822
Psp6I	CCWGG	2 cut(s)	1971, 2098
PspFI	CCCAGC	2 cut(s)	518, 1832
PspGI	CCWGG	2 cut(s)	1971, 2098
PspN4I	GGNNCC	4 cut(s)	977, 1983, 2097, 2200
PspPI	GGNCC	2 cut(s)	976, 2008
PstNI	CAGNNNCTG	1 cut(s)	1889
PsuI	RGATCY	4 cut(s)	1185, 1644, 1885, 1981
PteI	GCGCGC	1 cut(s)	4
RsaI	GTAC	1 cut(s)	1025
RsaNI	GTAC	1 cut(s)	1024
RseI	CAYNNNNRTG	6 cut(s)	1019, 1601, 1623, 1629, 1808, 2166
SaqAI	TTAA	8 cut(s)	528, 1113, 1218, 1350, 1755, 1815, 1988, 2133
SatI	GCNGC	3 cut(s)	131, 1959, 2028
Sau3AI	GATC	7 cut(s)	1185, 1203, 1506, 1599, 1644, 1885, 1981
Sau96I	GGNCC	2 cut(s)	976, 2008
ScrFI	CCNGG	2 cut(s)	1973, 2100
SduI	GDGCHC	3 cut(s)	1308, 1675, 1926
SfaNI	GCATC	8 cut(s)	154, 375, 408, 561, 654, 1264, 1710, 2169
Sfr274I	CTCGAG	1 cut(s)	247
SinI	GGWCC	2 cut(s)	976, 2008
SlaI	CTCGAG	1 cut(s)	247
SmiMI	CAYNNNNRTG	6 cut(s)	1019, 1601, 1623, 1629, 1808, 2166
SmlI	CTYRAG	2 cut(s)	179, 247
SmoI	CTYRAG	2 cut(s)	179, 247
SpeI	ACTAGT	1 cut(s)	692
SphI	GCATGC	1 cut(s)	1628
SspMI	CTAG	5 cut(s)	192, 693, 1086, 1139, 1730
StyD4I	CCNGG	2 cut(s)	1971, 2098
StyI	CCWWGG	2 cut(s)	1450, 1618
TaaI	ACNGT	3 cut(s)	1446, 1550, 2223
TaiI	ACGT	4 cut(s)	154, 890, 1199, 1311
TaqI	TCGA	3 cut(s)	248, 264, 416
TatI	WGTACW	1 cut(s)	1023
TauI	GCSGC	1 cut(s)	1961
TfiI	GAWTC	5 cut(s)	122, 1153, 1433, 2113, 2210
Tru1I	TTAA	8 cut(s)	528, 1113, 1218, 1350, 1755, 1815, 1988, 2133
Tru9I	TTAA	8 cut(s)	528, 1113, 1218, 1350, 1755, 1815, 1988, 2133
TscAI	CASTG	5 cut(s)	1213, 1342, 1509, 2064, 2209
TseFI	GTSAC	1 cut(s)	144
TseI	GCWGC	2 cut(s)	130, 2027
Tsp45I	GTSAC	1 cut(s)	144
TspDTI	ATGAA	9 cut(s)	194, 593, 747, 879, 880, 1082, 1272, 1491, 1647
TspRI	CASTG	5 cut(s)	1213, 1342, 1509, 2064, 2209
Van91I	CCANNNNNTGG	1 cut(s)	1858
VpaK11BI	GGWCC	2 cut(s)	976, 2008
VspI	ATTAAT	2 cut(s)	1113, 1815
XapI	RAATTY	5 cut(s)	505, 1381, 1591, 1681, 1779
XceI	RCATGY	4 cut(s)	953, 1024, 1628, 1716
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1969
XhoI	CTCGAG	1 cut(s)	247
XspI	CTAG	5 cut(s)	192, 693, 1086, 1139, 1730
ZraI	GACGTC	1 cut(s)	1197
Zsp2I	ATGCAT	2 cut(s)	1359, 2043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.