Rw7G031290

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
44735947 .. 44737748
1802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G031290.1

Sequence Viewer

Length: 1188 bp
ATGGGGAAGCAGAGTAGTGAGAGTAGTGTAGTTGATGGCTTAATGAAGCCAGTGATAACGATGGTGATCGCTCAGATTGCATATGCAGCAACGAGTATATTCTACAAGGTTGCAGCAGACTCTGGAATGAATCTCAGGATTCTCGTTGCCTACCGTCTCATGTTTTCATCTGCCATTATCGTTCCTCTTGCTCTTATACTCGAACGGAACAGCAGGCCCAAACTCACTCTAGTCGTACTCTTTCAAGCTTTTCTCTGCGGATTATTTGGGGGATCATTGTCAGAAAATTTATTCATAGAGGGATTAGTCTTAACATCACCAACCTTTGTTGCAGCCACTGCAAATCTGATTCCAGCCTTCACCTTCATCATGGCCATCTCTTTCAGGTTGGAGAAGTTGGCACTAGGAAGCCATGCAGGGAAGGCAAAGCTTGTGGGGACAGTGGTGGGTCTTGGTGGTGCTATGATCTTTACCTTCTTCAAAGGACCAGAGTTCTCCATCTGGTCAACTCACGTTGACCTTCTTCGAGGACATCAGGCGGCAACATCACCGTTATCGTCCTCCTCCCATAGAAGCACCGGGAGTCACCTGCTGGGCTCCTTCTTGGCACTCGGCTGCGTCGTTTCCTATGCAATGTGGCTCATAGTTCAGGCAAAAATGAGCAAGAGATATCCATGCCATTACTCGAGCACGGCTCTATTGTCGGTCATGGGATCGATTCAGTCCGTAGCTTTTGCTCTTTGCGTGGAGAGGGATTGGAGCCAGTGGAAATTGGGTTGGAACATCAAGCTTTTTACAGCTGCATATGGGGGAATTGTGACTTCGGGGATGGTGGTGGTTTTGATCTCATGGTGTGTACGCAAGCGAGGTCCATTGTTTGTATCAGTTTTCACTCCGCTTTCCCTAGTGATTGTGGCCATTGCTAGTTCTTTATTGCTCAATGAAAAGTTAAGCCTAGGCAGCGTATTTGGAGGGATTCTAATTGTATGCGGGTTGTACATGGTGCTGTGGGGGCAGAGCAAAGAGATGAAGACGATTAATAATGTGACTGATGATCGAGATCGACAACATCCAGCTGCAGCAAGGCTCCAAGATTCCCAAATCATCCAAGTCGTCGCAACGACTCGATCAGTTGACACTAATACCTCGTGTGAGAATAACAACACCACAAATGTTGGGTCTATTTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

395

Amino Acids

42.57

Weight (kDa)

9.49

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 17 - 157 8.5e-11 EamA-like transporter family
EamA PF00892 198 - 336 3.4e-13 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 597
Acc36I ACCTGC 1 cut(s) 597
AciI CCGC 4 cut(s) 258, 539, 896, 990
AclWI GGATC 2 cut(s) 280, 721
AcoI YGGCCR 2 cut(s) 372, 915
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 3 cut(s) 237, 858, 998
AgsI TTSAA 2 cut(s) 245, 481
AluBI AGCT 6 cut(s) 248, 430, 731, 790, 800, 1076
AluI AGCT 6 cut(s) 248, 430, 731, 790, 800, 1076
Alw21I GWGCWC 1 cut(s) 692
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 2 cut(s) 280, 721
AlwNI CAGNNNCTG 2 cut(s) 122, 338
Ama87I CYCGRG 1 cut(s) 685
AoxI GGCC 3 cut(s) 215, 372, 915
ApeKI GCWGC 8 cut(s) 86, 113, 332, 615, 800, 960, 1076, 1079
ApoI RAATTY 1 cut(s) 286
ArsI GACNNNNNNTTYG 1 cut(s) 1163
AseI ATTAAT 1 cut(s) 1038
AspA2I CCTAGG 1 cut(s) 955
AspS9I GGNCC 3 cut(s) 216, 485, 869
AsuC2I CCSGG 1 cut(s) 580
AsuHPI GGTGA 5 cut(s) 76, 309, 352, 540, 578
AvaI CYCGRG 1 cut(s) 685
AvaII GGWCC 2 cut(s) 485, 869
AvrII CCTAGG 1 cut(s) 955
BalI TGGCCA 2 cut(s) 374, 917
BanII GRGCYC 1 cut(s) 599
BauI CACGAG 1 cut(s) 1147
BbsI GAAGAC 1 cut(s) 1037
Bbv12I GWGCWC 1 cut(s) 692
BbvI GCAGC 8 cut(s) 98, 125, 344, 602, 787, 972, 1063, 1091
BccI CCATC 5 cut(s) 29, 55, 383, 506, 823
BceAI ACGGC 1 cut(s) 708
BcnI CCSGG 1 cut(s) 580
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 5 cut(s) 230, 404, 905, 924, 956
BfmI CTRYAG 1 cut(s) 1077
BfuAI ACCTGC 1 cut(s) 597
BisI GCNGC 9 cut(s) 87, 114, 333, 540, 616, 801, 961, 1077, 1080
BlnI CCTAGG 1 cut(s) 955
BlsI GCNGC 9 cut(s) 88, 115, 334, 541, 617, 802, 962, 1078, 1081
Bme1390I CCNGG 1 cut(s) 580
Bme18I GGWCC 2 cut(s) 485, 869
BmeT110I CYCGRG 1 cut(s) 685
BmgT120I GGNCC 3 cut(s) 216, 485, 869
BmiI GGNNCC 3 cut(s) 598, 761, 1088
BmrFI CCNGG 1 cut(s) 580
BpiI GAAGAC 1 cut(s) 1037
BplI GAGNNNNNCTC 2 cut(s) 679, 711
BpuMI CCSGG 1 cut(s) 580
Bsa29I ATCGAT 1 cut(s) 716
BsaBI GATNNNNATC 2 cut(s) 65, 1059
BsaJI CCNNGG 1 cut(s) 955
Bse1I ACTGG 2 cut(s) 50, 763
Bse3DI GCAATG 2 cut(s) 639, 918
Bse8I GATNNNNATC 2 cut(s) 65, 1059
BseCI ATCGAT 1 cut(s) 716
BseDI CCNNGG 1 cut(s) 955
BseGI GGATG 3 cut(s) 834, 1069, 1104
BseJI GATNNNNATC 2 cut(s) 65, 1059
BseMI GCAATG 2 cut(s) 639, 918
BseMII CTCAG 2 cut(s) 86, 148
BseNI ACTGG 2 cut(s) 50, 763
BseRI GAGGAG 1 cut(s) 553
BseXI GCAGC 8 cut(s) 98, 125, 344, 602, 787, 972, 1063, 1091
BseYI CCCAGC 1 cut(s) 592
BshFI GGCC 3 cut(s) 217, 374, 917
BshVI ATCGAT 1 cut(s) 716
BsiHKAI GWGCWC 1 cut(s) 692
BsiHKCI CYCGRG 1 cut(s) 685
BsiSI CCGG 1 cut(s) 579
BslFI GGGAC 1 cut(s) 451
BsmAI GTCTC 1 cut(s) 161
BsmBI CGTCTC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 451
BsnI GGCC 3 cut(s) 217, 374, 917
BsoBI CYCGRG 1 cut(s) 685
Bsp1286I GDGCHC 2 cut(s) 599, 692
Bsp1407I TGTACA 1 cut(s) 996
Bsp143I GATC 8 cut(s) 66, 272, 465, 713, 843, 1054, 1060, 1127
BspACI CCGC 4 cut(s) 258, 539, 896, 990
BspANI GGCC 3 cut(s) 217, 374, 917
BspCNI CTCAG 2 cut(s) 85, 147
BspDI ATCGAT 1 cut(s) 716
BspLI GGNNCC 3 cut(s) 598, 761, 1088
BspMAI CTGCAG 1 cut(s) 1081
BspMI ACCTGC 1 cut(s) 597
BspPI GGATC 2 cut(s) 280, 721
BsrDI GCAATG 2 cut(s) 639, 918
BsrGI TGTACA 1 cut(s) 996
BsrI ACTGG 2 cut(s) 50, 763
BssECI CCNNGG 1 cut(s) 955
BssMI GATC 8 cut(s) 66, 272, 465, 713, 843, 1054, 1060, 1127
BssSI CACGAG 1 cut(s) 1147
BssT1I CCWWGG 1 cut(s) 955
Bst2BI CACGAG 1 cut(s) 1147
Bst4CI ACNGT 3 cut(s) 155, 442, 552
BstAPI GCANNNNNTGC 1 cut(s) 338
BstAUI TGTACA 1 cut(s) 996
BstC8I GCNNGC 2 cut(s) 215, 863
BstDEI CTNAG 2 cut(s) 72, 134
BstF5I GGATG 3 cut(s) 834, 1069, 1104
BstKTI GATC 8 cut(s) 69, 275, 468, 716, 846, 1057, 1063, 1130
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 8 cut(s) 66, 272, 465, 713, 843, 1054, 1060, 1127
BstMWI GCNNNNNNNGC 6 cut(s) 77, 86, 338, 422, 960, 1012
BstSCI CCNGG 1 cut(s) 578
BstSFI CTRYAG 1 cut(s) 1077
BstV1I GCAGC 8 cut(s) 98, 125, 344, 602, 787, 972, 1063, 1091
BstV2I GAAGAC 1 cut(s) 1037
Bsu15I ATCGAT 1 cut(s) 716
BsuRI GGCC 3 cut(s) 217, 374, 917
BsuTUI ATCGAT 1 cut(s) 716
BtsCI GGATG 3 cut(s) 834, 1069, 1104
BtsI GCAGTG 1 cut(s) 336
BtsIMutI CAGTG 4 cut(s) 57, 336, 447, 770
BveI ACCTGC 1 cut(s) 597
Cac8I GCNNGC 2 cut(s) 215, 863
CaiI CAGNNNCTG 2 cut(s) 122, 338
Cfr13I GGNCC 3 cut(s) 216, 485, 869
ClaI ATCGAT 1 cut(s) 716
CseI GACGC 1 cut(s) 607
Csp6I GTAC 3 cut(s) 236, 857, 997
CspCI CAANNNNNGTGG 3 cut(s) 414, 449, 1156
CviAII CATG 7 cut(s) 160, 370, 413, 675, 709, 849, 1000
CviQI GTAC 3 cut(s) 236, 857, 997
DdeI CTNAG 2 cut(s) 72, 134
DpnI GATC 8 cut(s) 68, 274, 467, 715, 845, 1056, 1062, 1129
DpnII GATC 8 cut(s) 66, 272, 465, 713, 843, 1054, 1060, 1127
EaeI YGGCCR 2 cut(s) 372, 915
Eco130I CCWWGG 1 cut(s) 955
Eco24I GRGCYC 1 cut(s) 599
Eco32I GATATC 1 cut(s) 671
Eco47I GGWCC 2 cut(s) 485, 869
Eco88I CYCGRG 1 cut(s) 685
EcoRV GATATC 1 cut(s) 671
EcoT14I CCWWGG 1 cut(s) 955
EcoT38I GRGCYC 1 cut(s) 599
ErhI CCWWGG 1 cut(s) 955
Esp3I CGTCTC 1 cut(s) 161
FaeI CATG 7 cut(s) 163, 373, 416, 678, 712, 852, 1003
FaqI GGGAC 1 cut(s) 451
FatI CATG 7 cut(s) 159, 369, 412, 674, 708, 848, 999
FauI CCCGC 1 cut(s) 983
FauNDI CATATG 2 cut(s) 82, 805
Fnu4HI GCNGC 9 cut(s) 87, 114, 333, 540, 616, 801, 961, 1077, 1080
FokI GGATG 3 cut(s) 841, 1056, 1091
FriOI GRGCYC 1 cut(s) 599
Fsp4HI GCNGC 9 cut(s) 87, 114, 333, 540, 616, 801, 961, 1077, 1080
FspBI CTAG 5 cut(s) 230, 404, 905, 924, 956
GluI GCNGC 9 cut(s) 87, 114, 333, 540, 616, 801, 961, 1077, 1080
GsaI CCCAGC 1 cut(s) 596
HaeIII GGCC 3 cut(s) 217, 374, 917
HapII CCGG 1 cut(s) 579
HgaI GACGC 1 cut(s) 607
Hin1II CATG 7 cut(s) 163, 373, 416, 678, 712, 852, 1003
HincII GTYRAC 3 cut(s) 507, 517, 1135
HindII GTYRAC 3 cut(s) 507, 517, 1135
HindIII AAGCTT 3 cut(s) 246, 428, 788
HinfI GANTC 9 cut(s) 119, 130, 139, 349, 583, 718, 976, 1094, 1123
HpaII CCGG 1 cut(s) 579
HphI GGTGA 5 cut(s) 76, 309, 352, 540, 578
Hpy166II GTNNAC 4 cut(s) 507, 517, 857, 1135
Hpy188I TCNGA 3 cut(s) 75, 283, 348
Hpy188III TCNNGA 3 cut(s) 123, 136, 1058
Hpy8I GTNNAC 4 cut(s) 507, 517, 857, 1135
Hpy99I CGWCG 2 cut(s) 623, 1118
HpyAV CCTTC 6 cut(s) 367, 373, 415, 484, 530, 610
HpyCH4III ACNGT 3 cut(s) 155, 442, 552
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 9 cut(s) 80, 86, 113, 332, 341, 416, 632, 803, 1079
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 86, 338, 422, 960, 1012
HpyF3I CTNAG 2 cut(s) 72, 134
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 7 cut(s) 163, 373, 416, 678, 712, 852, 1003
Kzo9I GATC 8 cut(s) 66, 272, 465, 713, 843, 1054, 1060, 1127
LmnI GCTCC 3 cut(s) 602, 759, 1092
Lsp1109I GCAGC 8 cut(s) 98, 125, 344, 602, 787, 972, 1063, 1091
MaeI CTAG 5 cut(s) 230, 404, 905, 924, 956
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 3 cut(s) 584, 817, 1045
MalI GATC 8 cut(s) 68, 274, 467, 715, 845, 1056, 1062, 1129
MboI GATC 8 cut(s) 66, 272, 465, 713, 843, 1054, 1060, 1127
MboII GAAGA 3 cut(s) 469, 515, 1042
MhlI GDGCHC 2 cut(s) 599, 692
MlsI TGGCCA 2 cut(s) 374, 917
MluCI AATT 4 cut(s) 286, 770, 813, 981
MluNI TGGCCA 2 cut(s) 374, 917
MlyI GAGTC 3 cut(s) 113, 592, 1117
MmeI TCCRAC 2 cut(s) 369, 758
MnlI CCTC 9 cut(s) 195, 292, 521, 571, 574, 744, 860, 965, 1156
Mox20I TGGCCA 2 cut(s) 374, 917
MscI TGGCCA 2 cut(s) 374, 917
MseI TTAA 4 cut(s) 41, 311, 950, 1038
Msp20I TGGCCA 2 cut(s) 374, 917
MspA1I CMGCKG 2 cut(s) 800, 1076
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 1 cut(s) 580
MwoI GCNNNNNNNGC 6 cut(s) 77, 86, 338, 422, 960, 1012
NciI CCSGG 1 cut(s) 580
NdeI CATATG 2 cut(s) 82, 805
NdeII GATC 8 cut(s) 66, 272, 465, 713, 843, 1054, 1060, 1127
NlaIII CATG 7 cut(s) 163, 373, 416, 678, 712, 852, 1003
NlaIV GGNNCC 3 cut(s) 598, 761, 1088
NmeAIII GCCGAG 1 cut(s) 591
NmuCI GTSAC 3 cut(s) 584, 817, 1045
PaeR7I CTCGAG 1 cut(s) 685
PaqCI CACCTGC 1 cut(s) 597
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PfeI GAWTC 6 cut(s) 130, 139, 349, 718, 976, 1094
PkrI GCNGC 9 cut(s) 88, 115, 334, 541, 617, 802, 962, 1078, 1081
PleI GAGTC 3 cut(s) 113, 591, 1117
PpsI GAGTC 3 cut(s) 113, 591, 1117
PshBI ATTAAT 1 cut(s) 1038
PspFI CCCAGC 1 cut(s) 592
PspN4I GGNNCC 3 cut(s) 598, 761, 1088
PspPI GGNCC 3 cut(s) 216, 485, 869
PspXI VCTCGAGB 1 cut(s) 685
PstI CTGCAG 1 cut(s) 1081
PstNI CAGNNNCTG 2 cut(s) 122, 338
PvuII CAGCTG 2 cut(s) 800, 1076
RsaI GTAC 3 cut(s) 237, 858, 998
RsaNI GTAC 3 cut(s) 236, 857, 997
SaqAI TTAA 4 cut(s) 41, 311, 950, 1038
SatI GCNGC 9 cut(s) 87, 114, 333, 540, 616, 801, 961, 1077, 1080
Sau3AI GATC 8 cut(s) 66, 272, 465, 713, 843, 1054, 1060, 1127
Sau96I GGNCC 3 cut(s) 216, 485, 869
SchI GAGTC 3 cut(s) 113, 592, 1117
ScrFI CCNGG 1 cut(s) 580
SduI GDGCHC 2 cut(s) 599, 692
SfcI CTRYAG 1 cut(s) 1077
Sfr274I CTCGAG 1 cut(s) 685
SinI GGWCC 2 cut(s) 485, 869
SlaI CTCGAG 1 cut(s) 685
SmlI CTYRAG 1 cut(s) 685
SmoI CTYRAG 1 cut(s) 685
Sse9I AATT 4 cut(s) 286, 770, 813, 981
SsiI CCGC 4 cut(s) 258, 539, 896, 990
SspMI CTAG 5 cut(s) 230, 404, 905, 924, 956
StyD4I CCNGG 1 cut(s) 578
StyI CCWWGG 1 cut(s) 955
TaaI ACNGT 3 cut(s) 155, 442, 552
TaiI ACGT 1 cut(s) 516
TaqI TCGA 7 cut(s) 201, 526, 686, 716, 1057, 1063, 1126
TaqII GACCGA 1 cut(s) 694
TasI AATT 4 cut(s) 286, 770, 813, 981
TatI WGTACW 1 cut(s) 996
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 6 cut(s) 130, 139, 349, 718, 976, 1094
Tru1I TTAA 4 cut(s) 41, 311, 950, 1038
Tru9I TTAA 4 cut(s) 41, 311, 950, 1038
TscAI CASTG 4 cut(s) 57, 343, 447, 770
TseFI GTSAC 3 cut(s) 584, 817, 1045
TseI GCWGC 8 cut(s) 86, 113, 332, 615, 800, 960, 1076, 1079
Tsp45I GTSAC 3 cut(s) 584, 817, 1045
TspDTI ATGAA 7 cut(s) 59, 143, 156, 283, 355, 957, 1043
TspGWI ACGGA 2 cut(s) 220, 715
TspRI CASTG 4 cut(s) 57, 343, 447, 770
VpaK11BI GGWCC 2 cut(s) 485, 869
VspI ATTAAT 1 cut(s) 1038
XapI RAATTY 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 685
XmaJI CCTAGG 1 cut(s) 955
XspI CTAG 5 cut(s) 230, 404, 905, 924, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.