Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000337

Physical Location & Seq

Genomic Coordinates Forward (+)

51897599 .. 51898595

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1417400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGTGTGACATACCCTTGCTATTATTCAAGCACGGCTCTAATGTCAGCAATGGGGTCAATCCAGGCCGTTGGTTATGCCCTCTGCAAGGAGAGGGAGTGGAGCCAATGGAAGTTGGGTTGGAATATCAGGCTTCTAACAGTGGCATACTCGGGAATTATGGCCACTGGGCTAAGTGTGACAATTATTGCTTTGTGCATTCGCATGAGAGGCCCTTTGTTTGTATCTGTTTTCAACCCTCTCATGTTGGTACTCGTTGCCATCCTTGCGTCTTTGGTATTGGAAGAAAAGCTGCATCTAGGAAGCGTTTTGGGAGCAGTATTGATAGTGTGCGGTTTATATGGGGTGCTGTGGGGTAAGGGCAAAGAAATAGAGAAGATGAGTAATTCTGTACCATCAACAACCTTTCATCATCAGGATTCTGGCTCAATTGATATTGTGACAATGCCTCCAGATAACAATAAAGGCAACAGCAACAACATTGAGAGCCTAACAAATAACAATGCTCCAAAAGCTACTAGTTCTGCAGTCGGCACTAATTCAAAGAGAGGAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

186

Amino Acids

19.85

Weight (kDa)

8.93

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	10 - 117	6.1e-10	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25270 AT1G68170 AT1G68170
fragaria_vesca	FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica	MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica	Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis	pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis	RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata	RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora	Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii	Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa	Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha	Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana	Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	552
AfaI	GTAC	2 cut(s)	252, 393
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	30, 235, 543
AhlI	ACTAGT	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	2 cut(s)	292, 515
AluI	AGCT	2 cut(s)	292, 515
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	3 cut(s)	66, 162, 211
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	552
AspS9I	GGNCC	1 cut(s)	212
AvaI	CYCGRG	1 cut(s)	151
BalI	TGGCCA	1 cut(s)	164
BbvI	GCAGC	1 cut(s)	279
BccI	CCATC	2 cut(s)	269, 403
BceAI	ACGGC	2 cut(s)	51, 53
BciT130I	CCWGG	1 cut(s)	65
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	2 cut(s)	299, 519
BfmI	CTRYAG	1 cut(s)	525
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme1390I	CCNGG	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	65
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	304
BmuI	ACTGGG	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	435
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 433, 463
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	172
BseXI	GCAGC	1 cut(s)	279
BshFI	GGCC	3 cut(s)	68, 164, 213
BsiHKCI	CYCGRG	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	3 cut(s)	68, 164, 213
BsoBI	CYCGRG	1 cut(s)	151
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	3 cut(s)	68, 164, 213
BspLI	GGNNCC	1 cut(s)	104
BspMAI	CTGCAG	1 cut(s)	529
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	173
BstENI	CCTNNNNNAGG	1 cut(s)	86
BstF5I	GGATG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	3 cut(s)	210, 266, 512
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	63
BstSFI	CTRYAG	1 cut(s)	525
BstV1I	GCAGC	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	68, 164, 213
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	147, 165
Cfr13I	GGNCC	1 cut(s)	212
CseI	GACGC	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	251, 392
CviAII	CATG	2 cut(s)	205, 244
CviQI	GTAC	2 cut(s)	251, 392
DdeI	CTNAG	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	151
EcoNI	CCTNNNNNAGG	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	63
FaeI	CATG	2 cut(s)	208, 247
FaiI	YATR	8 cut(s)	13, 78, 148, 161, 206, 245, 340, 342
FatI	CATG	2 cut(s)	204, 243
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	2 cut(s)	299, 519
GluI	GCNGC	1 cut(s)	293
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	3 cut(s)	68, 164, 213
HgaI	GACGC	1 cut(s)	258
Hin1II	CATG	2 cut(s)	208, 247
HinfI	GANTC	1 cut(s)	419
Hpy188III	TCNNGA	3 cut(s)	153, 416, 452
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	87, 198, 295, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	210, 266, 512
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	208, 247
LmnI	GCTCC	3 cut(s)	102, 314, 511
LpnPI	CCDG	7 cut(s)	50, 77, 115, 153, 401, 408, 465
Lsp1109I	GCAGC	1 cut(s)	279
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	2 cut(s)	299, 519
MaeIII	GTNAC	3 cut(s)	7, 178, 439
MboII	GAAGA	2 cut(s)	296, 388
MfeI	CAATTG	1 cut(s)	429
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	6 cut(s)	156, 183, 385, 429, 538, 552
MluNI	TGGCCA	1 cut(s)	164
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	6 cut(s)	87, 92, 203, 249, 459, 542
Mox20I	TGGCCA	1 cut(s)	164
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	1 cut(s)	556
MslI	CAYNNNNRTG	1 cut(s)	203
Msp20I	TGGCCA	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	3 cut(s)	210, 266, 512
NlaIII	CATG	2 cut(s)	208, 247
NlaIV	GGNNCC	1 cut(s)	104
NmuCI	GTSAC	3 cut(s)	7, 178, 439
PctI	GAATGC	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	294
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	1 cut(s)	104
PspPI	GGNCC	1 cut(s)	212
PstI	CTGCAG	1 cut(s)	529
RsaI	GTAC	2 cut(s)	252, 393
RsaNI	GTAC	2 cut(s)	251, 392
RseI	CAYNNNNRTG	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	556
SatI	GCNGC	1 cut(s)	293
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	65
SetI	ASST	3 cut(s)	294, 407, 517
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	525
SmiMI	CAYNNNNRTG	1 cut(s)	203
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	6 cut(s)	156, 183, 385, 429, 538, 552
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	2 cut(s)	299, 519
StyD4I	CCNGG	1 cut(s)	63
TaaI	ACNGT	1 cut(s)	142
TasI	AATT	6 cut(s)	156, 183, 385, 429, 538, 552
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	1 cut(s)	556
Tru9I	TTAA	1 cut(s)	556
TscAI	CASTG	2 cut(s)	147, 172
TseFI	GTSAC	3 cut(s)	7, 178, 439
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	3 cut(s)	7, 178, 439
TspDTI	ATGAA	1 cut(s)	398
TspRI	CASTG	2 cut(s)	147, 172
XagI	CCTNNNNNAGG	1 cut(s)	86
XapI	RAATTY	1 cut(s)	552
XspI	CTAG	2 cut(s)	299, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.