Rmu_co8423019.1_g000001

WAT1-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8423019.1
OG0000337
Physical Location & Seq
Forward (+)
1 .. 1235
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8423019.1_g000001.1.cds

Sequence Viewer

Length: 717 bp
gagaagttgacattgggatattccggcatagccaaaattgttgggaccgtggttgggataggaggagcaatgcttttcactttctaccgaggacctgtatttaccatttggtccactcatattgaccttctacggcaatatcacaacactaatagcgtctcatcctcaagccacaagaacaatcatgcgttggggttcctggcaggcttcggcagcatcttgtgcttcggaatatggctcacagttcaggcgaagatgagcaagagatatccctgtccttactcgagcacggctttgatgtgcatcatgggatccatccagtccgttatttttgcgctttgcatggagagagattggaatcaatggaagatgggttgggatattaggttgtggactgctgcatactcgggaatcatggtttctggagtggcagtggttctgatgtcttggtctgtacaaaagcgaggggcactttttgtgtcaattttcgctccactggtactgttgatggtagcccttgctagttgcttgttgttggaggaaaaatctagcctcggaagtgtattgggaggggttctaattgtgtgcgggctatacatggtgctgtggggaaaaagcaaagaagaaccatcatcacttgtactaccctcatcgacaatagctccccgaaattccaagaacatagatagcgttccagttccattgaatgttggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
EamA

Protein Analysis

238

Amino Acids

25.85

Weight (kDa)

9.3

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 588
AclWI GGATC 2 cut(s) 306, 319
AcsI RAATTY 1 cut(s) 670
AfaI GTAC 3 cut(s) 456, 501, 642
AfiI CCNNNNNNNGG 1 cut(s) 54
AgsI TTSAA 1 cut(s) 706
AjnI CCWGG 1 cut(s) 198
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 662
AluI AGCT 1 cut(s) 662
Alw21I GWGCWC 1 cut(s) 290
Alw26I GTCTC 1 cut(s) 163
AlwI GGATC 2 cut(s) 306, 319
Ama87I CYCGRG 2 cut(s) 283, 406
ApeKI GCWGC 2 cut(s) 213, 398
ApoI RAATTY 1 cut(s) 670
AspLEI GCGC 1 cut(s) 337
AspS9I GGNCC 3 cut(s) 45, 92, 111
AvaI CYCGRG 2 cut(s) 283, 406
AvaII GGWCC 3 cut(s) 45, 92, 111
BaeGI GKGCMC 1 cut(s) 472
BamHI GGATCC 1 cut(s) 311
Bbv12I GWGCWC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 225, 385
BccI CCATC 4 cut(s) 323, 364, 502, 637
BceAI ACGGC 2 cut(s) 149, 306
BciT130I CCWGG 1 cut(s) 200
BcoDI GTCTC 1 cut(s) 163
BfaI CTAG 2 cut(s) 522, 549
BisI GCNGC 2 cut(s) 214, 399
BlsI GCNGC 2 cut(s) 215, 400
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 3 cut(s) 45, 92, 111
BmeT110I CYCGRG 2 cut(s) 283, 406
BmgT120I GGNCC 3 cut(s) 45, 92, 111
BmiI GGNNCC 3 cut(s) 46, 197, 313
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 2 cut(s) 225, 312
BpmI CTGGAG 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 151
BsaBI GATNNNNATC 2 cut(s) 302, 357
BsaJI CCNNGG 3 cut(s) 48, 88, 553
BsaXI ACNNNNNCTCC 4 cut(s) 417, 447, 646, 676
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse1I ACTGG 3 cut(s) 319, 501, 695
Bse3DI GCAATG 1 cut(s) 75
Bse8I GATNNNNATC 2 cut(s) 302, 357
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 3 cut(s) 48, 88, 553
BseGI GGATG 2 cut(s) 161, 315
BseJI GATNNNNATC 2 cut(s) 302, 357
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 3 cut(s) 319, 501, 695
BseRI GAGGAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 2 cut(s) 225, 385
BsiHKAI GWGCWC 1 cut(s) 290
BsiHKCI CYCGRG 2 cut(s) 283, 406
BsiSI CCGG 1 cut(s) 24
BslFI GGGAC 1 cut(s) 58
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 1 cut(s) 163
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 58
BsoBI CYCGRG 2 cut(s) 283, 406
Bsp1286I GDGCHC 2 cut(s) 290, 472
Bsp1407I TGTACA 1 cut(s) 454
Bsp143I GATC 1 cut(s) 311
BspACI CCGC 1 cut(s) 588
BspLI GGNNCC 3 cut(s) 46, 197, 313
BspPI GGATC 2 cut(s) 306, 319
BsrDI GCAATG 1 cut(s) 75
BsrGI TGTACA 1 cut(s) 454
BsrI ACTGG 3 cut(s) 319, 501, 695
BssECI CCNNGG 3 cut(s) 48, 88, 553
BssMI GATC 1 cut(s) 311
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 3 cut(s) 49, 244, 504
BstAPI GCANNNNNTGC 1 cut(s) 222
BstAUI TGTACA 1 cut(s) 454
BstC8I GCNNGC 2 cut(s) 205, 590
BstDSI CCRYGG 1 cut(s) 48
BstF5I GGATG 2 cut(s) 161, 315
BstHHI GCGC 1 cut(s) 337
BstKTI GATC 1 cut(s) 314
BstMAI GTCTC 1 cut(s) 163
BstMBI GATC 1 cut(s) 311
BstMWI GCNNNNNNNGC 2 cut(s) 213, 222
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSLI GKGCMC 1 cut(s) 472
BstV1I GCAGC 2 cut(s) 225, 385
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 161, 315
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 438, 494
Cac8I GCNNGC 2 cut(s) 205, 590
CfoI GCGC 1 cut(s) 337
Cfr13I GGNCC 3 cut(s) 45, 92, 111
CseI GACGC 1 cut(s) 145
Csp6I GTAC 3 cut(s) 455, 500, 641
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 5 cut(s) 185, 307, 343, 415, 598
CviJI RGCY 9 cut(s) 32, 171, 207, 238, 293, 515, 552, 592, 662
CviKI_1 RGCY 9 cut(s) 32, 171, 207, 238, 293, 515, 552, 592, 662
CviQI GTAC 3 cut(s) 455, 500, 641
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
Eco32I GATATC 1 cut(s) 269
Eco47I GGWCC 3 cut(s) 45, 92, 111
Eco88I CYCGRG 2 cut(s) 283, 406
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 269
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 5 cut(s) 188, 310, 346, 418, 601
FaqI GGGAC 1 cut(s) 58
FatI CATG 5 cut(s) 184, 306, 342, 414, 597
FauI CCCGC 1 cut(s) 581
Fnu4HI GCNGC 2 cut(s) 214, 399
FokI GGATG 2 cut(s) 148, 302
Fsp4HI GCNGC 2 cut(s) 214, 399
FspBI CTAG 2 cut(s) 522, 549
GlaI GCGC 1 cut(s) 336
GluI GCNGC 2 cut(s) 214, 399
GsuI CTGGAG 1 cut(s) 444
HapII CCGG 1 cut(s) 24
HgaI GACGC 1 cut(s) 145
HhaI GCGC 1 cut(s) 337
Hin1II CATG 5 cut(s) 188, 310, 346, 418, 601
Hin6I GCGC 1 cut(s) 335
HinP1I GCGC 1 cut(s) 335
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 2 cut(s) 358, 411
HpaII CCGG 1 cut(s) 24
Hpy166II GTNNAC 3 cut(s) 9, 114, 393
Hpy188I TCNGA 3 cut(s) 230, 441, 557
Hpy188III TCNNGA 2 cut(s) 408, 423
Hpy8I GTNNAC 3 cut(s) 9, 114, 393
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 3 cut(s) 49, 244, 504
HpyCH4V TGCA 3 cut(s) 303, 342, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 222
Hsp92II CATG 5 cut(s) 188, 310, 346, 418, 601
HspAI GCGC 1 cut(s) 335
Kzo9I GATC 1 cut(s) 311
LmnI GCTCC 3 cut(s) 65, 496, 667
Lsp1109I GCAGC 2 cut(s) 225, 385
LweI GCATC 2 cut(s) 225, 312
MaeI CTAG 2 cut(s) 522, 549
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MboII GAAGA 3 cut(s) 265, 379, 635
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 2 cut(s) 290, 472
MluCI AATT 4 cut(s) 36, 483, 579, 670
MmeI TCCRAC 2 cut(s) 516, 691
MnlI CCTC 8 cut(s) 56, 83, 175, 458, 532, 563, 563, 658
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 213, 222
NdeII GATC 1 cut(s) 311
NlaIII CATG 5 cut(s) 188, 310, 346, 418, 601
NlaIV GGNNCC 3 cut(s) 46, 197, 313
PaeR7I CTCGAG 1 cut(s) 283
PfeI GAWTC 2 cut(s) 358, 411
PkrI GCNGC 2 cut(s) 215, 400
PpuMI RGGWCCY 1 cut(s) 92
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 46, 197, 313
PspPI GGNCC 3 cut(s) 45, 92, 111
PspPPI RGGWCCY 1 cut(s) 92
PspXI VCTCGAGB 1 cut(s) 283
PsuI RGATCY 1 cut(s) 311
RsaI GTAC 3 cut(s) 456, 501, 642
RsaNI GTAC 3 cut(s) 455, 500, 641
SatI GCNGC 2 cut(s) 214, 399
Sau3AI GATC 1 cut(s) 311
Sau96I GGNCC 3 cut(s) 45, 92, 111
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 2 cut(s) 290, 472
SetI ASST 4 cut(s) 97, 129, 389, 664
SfaNI GCATC 2 cut(s) 225, 312
Sfr274I CTCGAG 1 cut(s) 283
SinI GGWCC 3 cut(s) 45, 92, 111
SlaI CTCGAG 1 cut(s) 283
SmlI CTYRAG 2 cut(s) 166, 283
SmoI CTYRAG 2 cut(s) 166, 283
Sse9I AATT 4 cut(s) 36, 483, 579, 670
SsiI CCGC 1 cut(s) 588
SspMI CTAG 2 cut(s) 522, 549
StyD4I CCNGG 1 cut(s) 198
TaaI ACNGT 3 cut(s) 49, 244, 504
TaqI TCGA 2 cut(s) 284, 653
TasI AATT 4 cut(s) 36, 483, 579, 670
TatI WGTACW 2 cut(s) 454, 640
TfiI GAWTC 2 cut(s) 358, 411
TscAI CASTG 2 cut(s) 438, 501
TseI GCWGC 2 cut(s) 213, 398
TspGWI ACGGA 1 cut(s) 313
TspRI CASTG 2 cut(s) 438, 501
VpaK11BI GGWCC 3 cut(s) 45, 92, 111
XapI RAATTY 1 cut(s) 670
XhoI CTCGAG 1 cut(s) 283
XspI CTAG 2 cut(s) 522, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.