Rorug07G0226100

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
Physical Location & Seq
Reverse (-)
20630598 .. 20633880
3283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0226100.1

Sequence Viewer

Length: 1305 bp
ATGGAGAAGTCATTGATCCACAAATCAATGAAGCCGAGGCAGAGGAGTGTTCAGAGGCTGAGCTGCTCTGTTCAGAACTATGATTGGGGGAAGATAGGCCCGGACTCAGAGGTGGCCAGGCTCTATGCCTCCAATTCTGGCTCTGAAATTGAGCCGGAAAAGCCTTATGCCGAGTTTTGGATGGGAACCCATGATTCTGGACCCTCATTCTTGATTCATCAGGATCTCAGTGGCATGTCTATGTCCCTCAAAGACTGGGTTTCAGCCAACTCAAATGAGCTGCTTGGTCATAAAGTCGTCCAAAAGTGGGGCTCTGACCTCCCTTTCTTGTTTAAGGTGCTTTCTGTGAGAAAGGCATTGTCGATACAGGCACATCCGGATAAGGACTTGGCCAAGGTTTTGCACAAGTTTATGCCAAGTGCTTACAAGGACGATAATCACAAGCCTGAGATGGCACTTGCTATAACACATTTTCAGGCTCTTTGTGGCTTTATCACTCTTGAGGAGCTTAAGGGTGTGCTTGATAATGTCCCTGAGATTGTACAAGTGGTTGGTAGTGAAGTAGCAAACCAAGTGTTTGACACCACAAATGCAGATGGGGAAGATAAAGTCAAGTCTGTTATGCGTTTGATTTTTACCCAACTCATGTCAGCAACCAAAGAGATTGTAACTACAGCAACAACTAAACTGAAAAATCGTTTACACATGGAAAATCAGGTGAGGCAGTTGACAGAAAAGGAGCAACTGGTTCTGGAATTGGAAAGGCAATATCCAGATGATGTGGGTGTCTTATCTGCTTTCTTTCTCAACTATGTCAAGCTTAGTCCTGGAGAAGCACTATACCTCGGAGCAAATGAACCCCATGCCTATATGTTCGGTGACTGCATCGAGTGCATGGCAACTTCTGACAATGTAGTCAGGGCCGGCCTCACTCCCAAGCATCGGGATGTGAAAACCCTTTGTTCTATGCTCACATACAAGCAGGGCTGCCCTGAAATCCTGAAAGGAGTTGCCTTAAATTCTTATGTGACAAGGTACCTCCCACCTTTTGACGAATTTGAGGTTGATCGATGCCATCTTCTCCAGGGAGAATCTGTGGAATTTCCTGCAGTCCAAGGTCCTTCCATTTTCGTCGTCACTTTTGGGGAGGGAATCATATATACAAGCAATTTTACAGGAGATATAAATATCACACAAGGAGAGGTTCTTTTCGTGCCTGCAGATACTGAGATTAGCATAACAAGTGCATCTGAGTTGCACATATATAGAGCCGGAGTGAACAGCATGTTCTTTCAAGTCCCATAA

Protein Analysis

434

Amino Acids

48.51

Weight (kDa)

5.51

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMI_typeI_cat PF20511 17 - 164 1.5e-50 Phosphomannose isomerase type I, catalytic domain
PMI_typeI_hel PF20512 184 - 269 1e-12 Phosphomannose isomerase type I, helical insertion domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 914
Acc65I GGTACC 1 cut(s) 1035
AccB1I GGYRCC 1 cut(s) 1035
AccIII TCCGGA 1 cut(s) 376
AclWI GGATC 2 cut(s) 10, 231
AcoI YGGCCR 2 cut(s) 114, 390
AcsI RAATTY 3 cut(s) 1018, 1055, 1100
AfaI GTAC 2 cut(s) 543, 1037
AfiI CCNNNNNNNGG 3 cut(s) 177, 307, 942
AflII CTTAAG 1 cut(s) 509
AgsI TTSAA 1 cut(s) 1295
AjnI CCWGG 3 cut(s) 116, 826, 1083
AluBI AGCT 4 cut(s) 63, 280, 508, 820
AluI AGCT 4 cut(s) 63, 280, 508, 820
AlwI GGATC 2 cut(s) 10, 231
AlwNI CAGNNNCTG 2 cut(s) 58, 1226
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 5 cut(s) 97, 114, 390, 921, 925
ApeKI GCWGC 3 cut(s) 63, 280, 987
ApoI RAATTY 3 cut(s) 1018, 1055, 1100
Asp718I GGTACC 1 cut(s) 1035
AspS9I GGNCC 4 cut(s) 98, 200, 921, 1118
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 730, 890
AvaII GGWCC 2 cut(s) 200, 1118
BalI TGGCCA 2 cut(s) 116, 392
BanI GGYRCC 1 cut(s) 1035
BanII GRGCYC 1 cut(s) 314
BbvI GCAGC 3 cut(s) 50, 267, 974
BccI CCATC 4 cut(s) 175, 445, 590, 1083
BciT130I CCWGG 3 cut(s) 118, 828, 1085
BcnI CCSGG 1 cut(s) 101
BfmI CTRYAG 3 cut(s) 672, 1107, 1218
BfrI CTTAAG 1 cut(s) 509
BisI GCNGC 3 cut(s) 64, 281, 988
BlpI GCTNAGC 1 cut(s) 59
BlsI GCNGC 3 cut(s) 65, 282, 989
Bme1390I CCNGG 4 cut(s) 101, 118, 828, 1085
Bme18I GGWCC 2 cut(s) 200, 1118
BmgT120I GGNCC 4 cut(s) 98, 200, 921, 1118
BmiI GGNNCC 3 cut(s) 187, 202, 1037
BmrFI CCNGG 4 cut(s) 101, 118, 828, 1085
BmrI ACTGGG 1 cut(s) 265
BmsI GCATC 4 cut(s) 894, 949, 1061, 1256
BmuI ACTGGG 1 cut(s) 265
BpmI CTGGAG 2 cut(s) 849, 1067
Bpu1102I GCTNAGC 1 cut(s) 59
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 1069
BsaJI CCNNGG 5 cut(s) 35, 393, 844, 1084, 1114
BsaWI WCCGGW 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 1080, 1110
Bsc4I CCNNNNNNNGG 3 cut(s) 177, 307, 942
Bse118I RCCGGY 1 cut(s) 923
Bse1I ACTGG 2 cut(s) 260, 750
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 3 cut(s) 118, 828, 1085
BseCI ATCGAT 1 cut(s) 1069
BseDI CCNNGG 5 cut(s) 35, 393, 844, 1084, 1114
BseGI GGATG 3 cut(s) 186, 373, 952
BseLI CCNNNNNNNGG 3 cut(s) 177, 307, 942
BseMII CTCAG 7 cut(s) 50, 120, 241, 438, 525, 1218, 1242
BseNI ACTGG 2 cut(s) 260, 750
BseRI GAGGAG 2 cut(s) 58, 518
BseXI GCAGC 3 cut(s) 50, 267, 974
BshFI GGCC 5 cut(s) 99, 116, 392, 923, 927
BshNI GGYRCC 1 cut(s) 1035
BshVI ATCGAT 1 cut(s) 1069
BsiSI CCGG 5 cut(s) 101, 155, 377, 924, 1272
BslFI GGGAC 3 cut(s) 229, 515, 1283
BslI CCNNNNNNNGG 3 cut(s) 177, 307, 942
BsmFI GGGAC 3 cut(s) 229, 515, 1283
BsnI GGCC 5 cut(s) 99, 116, 392, 923, 927
Bsp1286I GDGCHC 1 cut(s) 314
Bsp13I TCCGGA 1 cut(s) 376
Bsp1407I TGTACA 1 cut(s) 541
Bsp143I GATC 3 cut(s) 15, 223, 1066
Bsp1720I GCTNAGC 1 cut(s) 59
BspANI GGCC 5 cut(s) 99, 116, 392, 923, 927
BspCNI CTCAG 7 cut(s) 51, 119, 240, 439, 526, 1219, 1243
BspDI ATCGAT 1 cut(s) 1069
BspEI TCCGGA 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 187, 202, 1037
BspMAI CTGCAG 2 cut(s) 1111, 1222
BspPI GGATC 2 cut(s) 10, 231
BspT107I GGYRCC 1 cut(s) 1035
BspTI CTTAAG 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 923
BsrGI TGTACA 1 cut(s) 541
BsrI ACTGG 2 cut(s) 260, 750
BssAI RCCGGY 1 cut(s) 923
BssECI CCNNGG 5 cut(s) 35, 393, 844, 1084, 1114
BssMI GATC 3 cut(s) 15, 223, 1066
BssT1I CCWWGG 2 cut(s) 393, 1114
Bst2UI CCWGG 3 cut(s) 118, 828, 1085
BstAFI CTTAAG 1 cut(s) 509
BstAPI GCANNNNNTGC 1 cut(s) 891
BstAUI TGTACA 1 cut(s) 541
BstC8I GCNNGC 2 cut(s) 925, 1218
BstDEI CTNAG 8 cut(s) 59, 106, 227, 447, 534, 821, 1227, 1251
BstF5I GGATG 3 cut(s) 186, 373, 952
BstKTI GATC 3 cut(s) 18, 226, 1069
BstMBI GATC 3 cut(s) 15, 223, 1066
BstMWI GCNNNNNNNGC 2 cut(s) 160, 891
BstNI CCWGG 3 cut(s) 118, 828, 1085
BstNSI RCATGY 2 cut(s) 238, 1288
BstSCI CCNGG 4 cut(s) 99, 116, 826, 1083
BstSFI CTRYAG 3 cut(s) 672, 1107, 1218
BstV1I GCAGC 3 cut(s) 50, 267, 974
BstX2I RGATCY 1 cut(s) 223
BstXI CCANNNNNNTGG 1 cut(s) 197
BstYI RGATCY 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 1069
BsuRI GGCC 5 cut(s) 99, 116, 392, 923, 927
BsuTUI ATCGAT 1 cut(s) 1069
BtsCI GGATG 3 cut(s) 186, 373, 952
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 925, 1218
CaiI CAGNNNCTG 2 cut(s) 58, 1226
Cfr10I RCCGGY 1 cut(s) 923
Cfr13I GGNCC 4 cut(s) 98, 200, 921, 1118
ClaI ATCGAT 1 cut(s) 1069
Csp6I GTAC 2 cut(s) 542, 1036
CviAII CATG 7 cut(s) 191, 235, 646, 706, 863, 895, 1285
CviQI GTAC 2 cut(s) 542, 1036
DdeI CTNAG 8 cut(s) 59, 106, 227, 447, 534, 821, 1227, 1251
DpnI GATC 3 cut(s) 17, 225, 1068
DpnII GATC 3 cut(s) 15, 223, 1066
DrdI GACNNNNNNGTC 1 cut(s) 914
DseDI GACNNNNNNGTC 1 cut(s) 914
EaeI YGGCCR 2 cut(s) 114, 390
Eco130I CCWWGG 2 cut(s) 393, 1114
Eco24I GRGCYC 1 cut(s) 314
Eco47I GGWCC 2 cut(s) 200, 1118
EcoO109I RGGNCCY 1 cut(s) 1118
EcoRII CCWGG 3 cut(s) 116, 826, 1083
EcoT14I CCWWGG 2 cut(s) 393, 1114
EcoT38I GRGCYC 1 cut(s) 314
ErhI CCWWGG 2 cut(s) 393, 1114
FaeI CATG 7 cut(s) 194, 238, 649, 709, 866, 898, 1288
FaqI GGGAC 3 cut(s) 229, 515, 1283
FatI CATG 7 cut(s) 190, 234, 645, 705, 862, 894, 1284
Fnu4HI GCNGC 3 cut(s) 64, 281, 988
FokI GGATG 3 cut(s) 193, 360, 959
FriOI GRGCYC 1 cut(s) 314
FseI GGCCGGCC 1 cut(s) 927
Fsp4HI GCNGC 3 cut(s) 64, 281, 988
GluI GCNGC 3 cut(s) 64, 281, 988
GsuI CTGGAG 2 cut(s) 849, 1067
HaeIII GGCC 5 cut(s) 99, 116, 392, 923, 927
HapII CCGG 5 cut(s) 101, 155, 377, 924, 1272
Hin1II CATG 7 cut(s) 194, 238, 649, 709, 866, 898, 1288
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HindIII AAGCTT 1 cut(s) 818
HinfI GANTC 5 cut(s) 104, 194, 214, 1091, 1152
HpaII CCGG 5 cut(s) 101, 155, 377, 924, 1272
HphI GGTGA 2 cut(s) 730, 890
Hpy166II GTNNAC 3 cut(s) 701, 729, 1279
Hpy188I TCNGA 8 cut(s) 54, 75, 109, 145, 316, 848, 907, 1252
Hpy188III TCNNGA 9 cut(s) 198, 211, 221, 377, 500, 752, 773, 944, 1000
Hpy8I GTNNAC 3 cut(s) 701, 729, 1279
Hpy99I CGWCG 1 cut(s) 1136
HpyAV CCTTC 1 cut(s) 1131
HpyCH4V TGCA 8 cut(s) 403, 593, 885, 894, 1109, 1220, 1247, 1258
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 891
HpyF3I CTNAG 8 cut(s) 59, 106, 227, 447, 534, 821, 1227, 1251
Hsp92II CATG 7 cut(s) 194, 238, 649, 709, 866, 898, 1288
Kpn2I TCCGGA 1 cut(s) 376
KpnI GGTACC 1 cut(s) 1039
KroI GCCGGC 1 cut(s) 923
KroNI GCCGGC 1 cut(s) 925
Kzo9I GATC 3 cut(s) 15, 223, 1066
LmnI GCTCC 3 cut(s) 505, 739, 848
Lsp1109I GCAGC 3 cut(s) 50, 267, 974
LweI GCATC 4 cut(s) 894, 949, 1061, 1256
MaeIII GTNAC 4 cut(s) 667, 878, 1027, 1135
MalI GATC 3 cut(s) 17, 225, 1068
MboI GATC 3 cut(s) 15, 223, 1066
MboII GAAGA 3 cut(s) 103, 614, 1070
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 314
MlsI TGGCCA 2 cut(s) 116, 392
MluCI AATT 7 cut(s) 133, 147, 755, 1018, 1055, 1100, 1168
MluNI TGGCCA 2 cut(s) 116, 392
MlyI GAGTC 1 cut(s) 98
Mox20I TGGCCA 2 cut(s) 116, 392
MroI TCCGGA 1 cut(s) 376
MroNI GCCGGC 1 cut(s) 923
MscI TGGCCA 2 cut(s) 116, 392
MseI TTAA 3 cut(s) 333, 510, 1016
MslI CAYNNNNRTG 2 cut(s) 239, 945
Msp20I TGGCCA 2 cut(s) 116, 392
MspCI CTTAAG 1 cut(s) 509
MspI CCGG 5 cut(s) 101, 155, 377, 924, 1272
MspR9I CCNGG 4 cut(s) 101, 118, 828, 1085
MvaI CCWGG 3 cut(s) 118, 828, 1085
MwoI GCNNNNNNNGC 2 cut(s) 160, 891
NaeI GCCGGC 1 cut(s) 925
NciI CCSGG 1 cut(s) 101
NdeII GATC 3 cut(s) 15, 223, 1066
NgoMIV GCCGGC 1 cut(s) 923
NlaIII CATG 7 cut(s) 194, 238, 649, 709, 866, 898, 1288
NlaIV GGNNCC 3 cut(s) 187, 202, 1037
NmeAIII GCCGAG 2 cut(s) 60, 196
NmuCI GTSAC 3 cut(s) 878, 1027, 1135
NspI RCATGY 2 cut(s) 238, 1288
PdiI GCCGGC 1 cut(s) 925
PfeI GAWTC 4 cut(s) 194, 214, 1091, 1152
PfoI TCCNGGA 1 cut(s) 826
PkrI GCNGC 3 cut(s) 65, 282, 989
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PpuMI RGGWCCY 1 cut(s) 1118
Psp5II RGGWCCY 1 cut(s) 1118
Psp6I CCWGG 3 cut(s) 116, 826, 1083
PspGI CCWGG 3 cut(s) 116, 826, 1083
PspN4I GGNNCC 3 cut(s) 187, 202, 1037
PspPI GGNCC 4 cut(s) 98, 200, 921, 1118
PspPPI RGGWCCY 1 cut(s) 1118
PstI CTGCAG 2 cut(s) 1111, 1222
PstNI CAGNNNCTG 2 cut(s) 58, 1226
PsuI RGATCY 1 cut(s) 223
RigI GGCCGGCC 1 cut(s) 927
RsaI GTAC 2 cut(s) 543, 1037
RsaNI GTAC 2 cut(s) 542, 1036
RseI CAYNNNNRTG 2 cut(s) 239, 945
SaqAI TTAA 3 cut(s) 333, 510, 1016
SatI GCNGC 3 cut(s) 64, 281, 988
Sau3AI GATC 3 cut(s) 15, 223, 1066
Sau96I GGNCC 4 cut(s) 98, 200, 921, 1118
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 4 cut(s) 101, 118, 828, 1085
SduI GDGCHC 1 cut(s) 314
SfaNI GCATC 4 cut(s) 894, 949, 1061, 1256
SfcI CTRYAG 3 cut(s) 672, 1107, 1218
SinI GGWCC 2 cut(s) 200, 1118
SmiMI CAYNNNNRTG 2 cut(s) 239, 945
SmlI CTYRAG 2 cut(s) 500, 509
SmoI CTYRAG 2 cut(s) 500, 509
Sse9I AATT 7 cut(s) 133, 147, 755, 1018, 1055, 1100, 1168
StyD4I CCNGG 4 cut(s) 99, 116, 826, 1083
StyI CCWWGG 2 cut(s) 393, 1114
TaqI TCGA 3 cut(s) 362, 888, 1069
TasI AATT 7 cut(s) 133, 147, 755, 1018, 1055, 1100, 1168
TatI WGTACW 1 cut(s) 541
TfiI GAWTC 4 cut(s) 194, 214, 1091, 1152
Tru1I TTAA 3 cut(s) 333, 510, 1016
Tru9I TTAA 3 cut(s) 333, 510, 1016
TscAI CASTG 1 cut(s) 235
TseFI GTSAC 3 cut(s) 878, 1027, 1135
TseI GCWGC 3 cut(s) 63, 280, 987
Tsp45I GTSAC 3 cut(s) 878, 1027, 1135
TspDTI ATGAA 3 cut(s) 44, 206, 870
TspRI CASTG 1 cut(s) 235
Vha464I CTTAAG 1 cut(s) 509
VpaK11BI GGWCC 2 cut(s) 200, 1118
XapI RAATTY 3 cut(s) 1018, 1055, 1100
XceI RCATGY 2 cut(s) 238, 1288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.