Rroxscaffold_3G00234370

WAT1-related protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
20721245 .. 20725233
3989 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234370.1

Sequence Viewer

Length: 1191 bp
ATGATGATGATGGGGGGTACCTGGATTGAGCTTTGCAATGCTCTGCATGGCCTGAAGCTAGTGCTGTTAATGGTGGCGGTTCAGGTAACCTTCGCCGGAGTCAACGTTTTATACAAACTCGCCGCCAACGATGGCATGAACATCAATCTTGTTATTGCTTATCGCTTCCTCTTCGCCACCGCTTTCCTCACTCCTTTTGCTCTTTACTTCGAAAGAAAGAGCAGGCCGAAGCTAACCTGGATGGTAGTATTGCAAGCATTTCTGTGTGGCTTGTTTGGGGGGGCAATGTCACAAAACATGTACATTGCAAGCATAGCCTTGACATCCGCGACTTTTGCTTGCGCCATAACCCAACTCATTCCGGCCATAACTTTCATTTTGGCCGTAATTTTCAGGTTGGAGAAACTGAACTTAAGGAGCATGGGAGGGAAGGCAAAGGTGTTGGGAACATTAATGGGAATAGGTGGAGCAATGTTTCTGACCTTTTACAAAGGTGTCGAAATCAACATATGGTCCACGCATGTTGACCTTTTGCACAGTAGTCATCAACCAAGCCGCCACGTGGCAGCACATAACAGTAGAACAGATTTCACAGATCGCATATTGAGTTGTCTTCTGGCTATCGGCAGCTCTTCCGGATATGCATTGTGGCTAATTATTCAGGCGAAAATGGGAGAGAGATACCCTTGCTATTATTCAAGCACAGCTCTAATGTCACTGATGGGGTCGATACAGTCAGTTGGCTTTGCCCTTTGCATGGAGAGGGATTGGAACCAATGGAAATTAGGTTGGAATATTAGACTCCTTGCGGTTGCATACACGGGGATTGTGGCTACGGGAATAAGTGTGACAATTATAGCATTGTGTGTACGCATGAAAGGCCCGTTATTCGTATCCGTTTTCAACCCTCTTGTGCTTGTGGTTGTTGCCTTTGTTGGCTCTTTGCTCTTGGATGAAAAGTTGCACCTTGGAAGCGTGATAGGATCGATATTAATCGTGGGTGGTTTATATACCGTGCTGTGGGGTAAAAGCAAAGACATAAAGATGATGACACAATCTGTGCCAAGAAGCTTTGAGGAGGAATTTGCAGAATCACTTGAAATTGTTACAAGGTCTCCAGATGACAAAGCCAGCAACAACAAGAATGAGAGTGAAACAAAGAATAATGCTCCAAATACTCTGCCAACTTGA

Protein Analysis

396

Amino Acids

43.48

Weight (kDa)

9.18

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EamA PF00892 20 - 161 5.9e-17 EamA-like transporter family
EamA PF00892 203 - 340 2.1e-10 EamA-like transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 17
AccB1I GGYRCC 1 cut(s) 17
AccII CGCG 1 cut(s) 329
AccIII TCCGGA 1 cut(s) 635
AciI CCGC 6 cut(s) 77, 123, 180, 327, 556, 809
AclI AACGTT 1 cut(s) 105
AclWI GGATC 1 cut(s) 991
AcoI YGGCCR 2 cut(s) 363, 381
AcsI RAATTY 1 cut(s) 1082
AcuI CTGAAG 1 cut(s) 74
AcvI CACGTG 1 cut(s) 562
AfaI GTAC 3 cut(s) 19, 302, 870
AfiI CCNNNNNNNGG 3 cut(s) 562, 757, 1020
AflII CTTAAG 1 cut(s) 412
AflIII ACRYGT 1 cut(s) 297
AgsI TTSAA 3 cut(s) 699, 904, 1100
AjnI CCWGG 2 cut(s) 20, 236
AluBI AGCT 6 cut(s) 31, 58, 232, 630, 707, 1071
AluI AGCT 6 cut(s) 31, 58, 232, 630, 707, 1071
Alw26I GTCTC 1 cut(s) 1119
AlwI GGATC 1 cut(s) 991
Aor13HI TCCGGA 1 cut(s) 635
AoxI GGCC 5 cut(s) 49, 224, 363, 381, 880
ApeKI GCWGC 2 cut(s) 566, 627
ApoI RAATTY 1 cut(s) 1082
AseI ATTAAT 2 cut(s) 452, 992
Asp718I GGTACC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 344
AspS9I GGNCC 2 cut(s) 513, 881
AsuII TTCGAA 1 cut(s) 210
AvaII GGWCC 1 cut(s) 513
BanI GGYRCC 1 cut(s) 17
BbrPI CACGTG 1 cut(s) 562
BbsI GAAGAC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 578, 639
BccI CCATC 4 cut(s) 4, 125, 235, 715
BceAI ACGGC 1 cut(s) 368
BciT130I CCWGG 2 cut(s) 22, 238
BciVI GTATCC 1 cut(s) 904
BcoDI GTCTC 1 cut(s) 1119
BfaI CTAG 1 cut(s) 59
BfrI CTTAAG 1 cut(s) 412
BfuI GTATCC 1 cut(s) 904
BisI GCNGC 4 cut(s) 123, 556, 567, 628
BlsI GCNGC 4 cut(s) 124, 557, 568, 629
Bme1390I CCNGG 2 cut(s) 22, 238
Bme18I GGWCC 1 cut(s) 513
BmgT120I GGNCC 2 cut(s) 513, 881
BmiI GGNNCC 2 cut(s) 19, 773
BmrFI CCNGG 2 cut(s) 22, 238
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 1101
Bpu14I TTCGAA 1 cut(s) 210
Bsa29I ATCGAT 1 cut(s) 986
BsaAI YACGTR 1 cut(s) 562
BsaBI GATNNNNATC 1 cut(s) 992
BsaI GGTCTC 1 cut(s) 1119
BsaJI CCNNGG 1 cut(s) 967
BsaWI WCCGGW 1 cut(s) 635
BsaXI ACNNNNNCTCC 4 cut(s) 90, 120, 1099, 1129
Bsc4I CCNNNNNNNGG 3 cut(s) 562, 757, 1020
Bse3DI GCAATG 4 cut(s) 43, 291, 303, 477
Bse8I GATNNNNATC 1 cut(s) 992
BseAI TCCGGA 1 cut(s) 635
BseBI CCWGG 2 cut(s) 22, 238
BseCI ATCGAT 1 cut(s) 986
BseDI CCNNGG 1 cut(s) 967
BseGI GGATG 3 cut(s) 246, 323, 958
BseJI GATNNNNATC 1 cut(s) 992
BseLI CCNNNNNNNGG 3 cut(s) 562, 757, 1020
BseMI GCAATG 4 cut(s) 43, 291, 303, 477
BseRI GAGGAG 1 cut(s) 1091
BseXI GCAGC 2 cut(s) 578, 639
Bsh1236I CGCG 1 cut(s) 329
BshFI GGCC 5 cut(s) 51, 226, 365, 383, 882
BshNI GGYRCC 1 cut(s) 17
BshVI ATCGAT 1 cut(s) 986
BsiSI CCGG 3 cut(s) 96, 362, 636
BslI CCNNNNNNNGG 3 cut(s) 562, 757, 1020
BsmAI GTCTC 1 cut(s) 1119
BsnI GGCC 5 cut(s) 51, 226, 365, 383, 882
Bso31I GGTCTC 1 cut(s) 1119
Bsp119I TTCGAA 1 cut(s) 210
Bsp13I TCCGGA 1 cut(s) 635
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 2 cut(s) 595, 983
BspACI CCGC 6 cut(s) 77, 123, 180, 327, 556, 809
BspANI GGCC 5 cut(s) 51, 226, 365, 383, 882
BspDI ATCGAT 1 cut(s) 986
BspEI TCCGGA 1 cut(s) 635
BspFNI CGCG 1 cut(s) 329
BspLI GGNNCC 2 cut(s) 19, 773
BspPI GGATC 1 cut(s) 991
BspQI GCTCTTC 1 cut(s) 637
BspT104I TTCGAA 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 17
BspTI CTTAAG 1 cut(s) 412
BspTNI GGTCTC 1 cut(s) 1119
BsrDI GCAATG 4 cut(s) 43, 291, 303, 477
BsrGI TGTACA 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 967
BssMI GATC 2 cut(s) 595, 983
BssT1I CCWWGG 1 cut(s) 967
Bst2UI CCWGG 2 cut(s) 22, 238
Bst4CI ACNGT 4 cut(s) 539, 578, 735, 1015
Bst6I CTCTTC 2 cut(s) 176, 637
BstAFI CTTAAG 1 cut(s) 412
BstAUI TGTACA 1 cut(s) 300
BstBAI YACGTR 1 cut(s) 562
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 5 cut(s) 224, 255, 310, 340, 1132
BstEII GGTNACC 1 cut(s) 85
BstF5I GGATG 3 cut(s) 246, 323, 958
BstFNI CGCG 1 cut(s) 329
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 2 cut(s) 598, 986
BstMAI GTCTC 1 cut(s) 1119
BstMBI GATC 2 cut(s) 595, 983
BstMWI GCNNNNNNNGC 3 cut(s) 314, 335, 879
BstNI CCWGG 2 cut(s) 22, 238
BstNSI RCATGY 2 cut(s) 301, 524
BstPI GGTNACC 1 cut(s) 85
BstSCI CCNGG 2 cut(s) 20, 236
BstUI CGCG 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 578, 639
BstV2I GAAGAC 1 cut(s) 605
Bsu15I ATCGAT 1 cut(s) 986
BsuI GTATCC 1 cut(s) 904
BsuRI GGCC 5 cut(s) 51, 226, 365, 383, 882
BsuTUI ATCGAT 1 cut(s) 986
BtsCI GGATG 3 cut(s) 246, 323, 958
BtsIMutI CAGTG 1 cut(s) 716
Cac8I GCNNGC 5 cut(s) 224, 255, 310, 340, 1132
CfoI GCGC 1 cut(s) 344
Cfr13I GGNCC 2 cut(s) 513, 881
ClaI ATCGAT 1 cut(s) 986
Csp6I GTAC 3 cut(s) 18, 301, 869
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 7 cut(s) 47, 136, 298, 421, 521, 757, 874
CviQI GTAC 3 cut(s) 18, 301, 869
DpnI GATC 2 cut(s) 597, 985
DpnII GATC 2 cut(s) 595, 983
EaeI YGGCCR 2 cut(s) 363, 381
Eam1104I CTCTTC 2 cut(s) 176, 637
EarI CTCTTC 2 cut(s) 176, 637
Eco130I CCWWGG 1 cut(s) 967
Eco31I GGTCTC 1 cut(s) 1119
Eco47I GGWCC 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 74
Eco72I CACGTG 1 cut(s) 562
Eco91I GGTNACC 1 cut(s) 85
EcoO65I GGTNACC 1 cut(s) 85
EcoRII CCWGG 2 cut(s) 20, 236
EcoT14I CCWWGG 1 cut(s) 967
EcoT22I ATGCAT 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 967
FaeI CATG 7 cut(s) 50, 139, 301, 424, 524, 760, 877
FatI CATG 7 cut(s) 46, 135, 297, 420, 520, 756, 873
FauNDI CATATG 1 cut(s) 509
Fnu4HI GCNGC 4 cut(s) 123, 556, 567, 628
FokI GGATG 3 cut(s) 253, 310, 965
Fsp4HI GCNGC 4 cut(s) 123, 556, 567, 628
FspBI CTAG 1 cut(s) 59
GlaI GCGC 1 cut(s) 343
GluI GCNGC 4 cut(s) 123, 556, 567, 628
GsuI CTGGAG 1 cut(s) 1101
HaeIII GGCC 5 cut(s) 51, 226, 365, 383, 882
HapII CCGG 3 cut(s) 96, 362, 636
HhaI GCGC 1 cut(s) 344
Hin1II CATG 7 cut(s) 50, 139, 301, 424, 524, 760, 877
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HincII GTYRAC 2 cut(s) 103, 526
HindII GTYRAC 2 cut(s) 103, 526
HindIII AAGCTT 1 cut(s) 1069
HinfI GANTC 3 cut(s) 99, 801, 1091
HpaII CCGG 3 cut(s) 96, 362, 636
Hpy166II GTNNAC 4 cut(s) 103, 516, 526, 869
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 2 cut(s) 636, 1118
Hpy8I GTNNAC 4 cut(s) 103, 516, 526, 869
HpyAV CCTTC 2 cut(s) 100, 424
HpyCH4III ACNGT 4 cut(s) 539, 578, 735, 1015
HpyCH4IV ACGT 2 cut(s) 105, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 335, 879
HpySE526I ACGT 2 cut(s) 105, 561
Hsp92II CATG 7 cut(s) 50, 139, 301, 424, 524, 760, 877
HspAI GCGC 1 cut(s) 342
Kpn2I TCCGGA 1 cut(s) 635
KpnI GGTACC 1 cut(s) 21
Kzo9I GATC 2 cut(s) 595, 983
LguI GCTCTTC 1 cut(s) 637
LmnI GCTCC 3 cut(s) 417, 467, 1174
Lsp1109I GCAGC 2 cut(s) 578, 639
MaeI CTAG 1 cut(s) 59
MaeII ACGT 2 cut(s) 105, 561
MaeIII GTNAC 5 cut(s) 85, 288, 714, 847, 1105
MalI GATC 2 cut(s) 597, 985
MboI GATC 2 cut(s) 595, 983
MboII GAAGA 3 cut(s) 163, 605, 624
MluCI AATT 6 cut(s) 387, 654, 782, 852, 1082, 1101
MlyI GAGTC 2 cut(s) 108, 795
MmeI TCCRAC 2 cut(s) 378, 770
MnlI CCTC 7 cut(s) 179, 197, 419, 756, 918, 1069, 1072
Mph1103I ATGCAT 1 cut(s) 646
MroI TCCGGA 1 cut(s) 635
MseI TTAA 4 cut(s) 68, 413, 452, 992
MslI CAYNNNNRTG 2 cut(s) 262, 1043
MspCI CTTAAG 1 cut(s) 412
MspI CCGG 3 cut(s) 96, 362, 636
MspR9I CCNGG 2 cut(s) 22, 238
MvaI CCWGG 2 cut(s) 22, 238
MvnI CGCG 1 cut(s) 329
MwoI GCNNNNNNNGC 3 cut(s) 314, 335, 879
NdeI CATATG 1 cut(s) 509
NdeII GATC 2 cut(s) 595, 983
NlaIII CATG 7 cut(s) 50, 139, 301, 424, 524, 760, 877
NlaIV GGNNCC 2 cut(s) 19, 773
NmuCI GTSAC 3 cut(s) 288, 714, 847
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 2 cut(s) 301, 524
NspV TTCGAA 1 cut(s) 210
PciI ACATGT 1 cut(s) 297
PciSI GCTCTTC 1 cut(s) 637
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 1 cut(s) 1091
PkrI GCNGC 4 cut(s) 124, 557, 568, 629
PleI GAGTC 2 cut(s) 107, 795
PmaCI CACGTG 1 cut(s) 562
PmlI CACGTG 1 cut(s) 562
PpsI GAGTC 2 cut(s) 107, 795
Ppu21I YACGTR 1 cut(s) 562
PscI ACATGT 1 cut(s) 297
PshBI ATTAAT 2 cut(s) 452, 992
Psp1406I AACGTT 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 20, 236
PspCI CACGTG 1 cut(s) 562
PspEI GGTNACC 1 cut(s) 85
PspGI CCWGG 2 cut(s) 20, 236
PspN4I GGNNCC 2 cut(s) 19, 773
PspPI GGNCC 2 cut(s) 513, 881
RsaI GTAC 3 cut(s) 19, 302, 870
RsaNI GTAC 3 cut(s) 18, 301, 869
RseI CAYNNNNRTG 2 cut(s) 262, 1043
SapI GCTCTTC 1 cut(s) 637
SaqAI TTAA 4 cut(s) 68, 413, 452, 992
SatI GCNGC 4 cut(s) 123, 556, 567, 628
Sau3AI GATC 2 cut(s) 595, 983
Sau96I GGNCC 2 cut(s) 513, 881
SchI GAGTC 2 cut(s) 108, 795
ScrFI CCNGG 2 cut(s) 22, 238
SfuI TTCGAA 1 cut(s) 210
SinI GGWCC 1 cut(s) 513
SmiMI CAYNNNNRTG 2 cut(s) 262, 1043
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
Sse9I AATT 6 cut(s) 387, 654, 782, 852, 1082, 1101
SsiI CCGC 6 cut(s) 77, 123, 180, 327, 556, 809
SspI AATATT 1 cut(s) 796
SspMI CTAG 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 20, 236
StyI CCWWGG 1 cut(s) 967
TaaI ACNGT 4 cut(s) 539, 578, 735, 1015
TaiI ACGT 2 cut(s) 108, 564
TaqI TCGA 4 cut(s) 210, 498, 728, 986
TasI AATT 6 cut(s) 387, 654, 782, 852, 1082, 1101
TatI WGTACW 1 cut(s) 300
TauI GCSGC 2 cut(s) 125, 558
TfiI GAWTC 1 cut(s) 1091
Tru1I TTAA 4 cut(s) 68, 413, 452, 992
Tru9I TTAA 4 cut(s) 68, 413, 452, 992
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 3 cut(s) 288, 714, 847
TseI GCWGC 2 cut(s) 566, 627
Tsp45I GTSAC 3 cut(s) 288, 714, 847
TspDTI ATGAA 4 cut(s) 152, 364, 890, 969
TspGWI ACGGA 1 cut(s) 886
TspRI CASTG 1 cut(s) 723
Vha464I CTTAAG 1 cut(s) 412
VpaK11BI GGWCC 1 cut(s) 513
VspI ATTAAT 2 cut(s) 452, 992
XapI RAATTY 1 cut(s) 1082
XceI RCATGY 2 cut(s) 301, 524
XspI CTAG 1 cut(s) 59
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.