pycom15g37030

WAT1-related protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
36977820 .. 36980016
2197 bp
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UTR
Exon/CDS
Intron
pycom15g37030.2

Sequence Viewer

Length: 594 bp
ATGGGCACTGGTCAGATATGTAATGTTGTTCATGGGTTGAAGCCAGTGTTGTTAATGGTGGTGATTCAATTTGCACTTGCAGGAGTTAATATTCTCTATAAACTGGCCGCTCACGATGGAATGAATTTAAGGATTCTTGTTGCATATCGCTTCATTTTTGGAACCGCTTTCCTTCTTCCTATTGCTCTTTTCATCGAAAGGAAGAGCAGGCCAAAGCTCACCTGGATGGTACTTTTGCAAGGATTTTTGTCTGGCTTGTTCGGGCTGGAGAAGTTGAATTTGAAAAACCTAGCAGGGAAGGCAAAGGTGATGGGAACATTAATGGGAATAGGTGGAGCAATGCTTATGACCTTTTATAAAGGTATGGAAATCAACATATGGTCCACGCATGTTGACCTTATACATACTAATCGGCAACAACACAGCCAATTGGCATCAACACCGCATACAGACACTGGTAATCAACTATTGGGTTGTCTACTGGCCTTCGCAAGCTGTTTGTGCTACGCTATATGGCTCATTATCCAGGTGATTCTCTTAATTACCAAAGTATTTATAAACCCACCATTTTATGTTGGCTTCATTTTTAGGTAA

Protein Analysis

198

Amino Acids

21.91

Weight (kDa)

9.77

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000337)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25270 AT1G68170 AT1G68170
fragaria_vesca FvH4_5g30250 FvH4_5g30250 FvH4_5g30280 FvH4_5g30370 FvH4_5g30371 FvH4_7g27400 FvH4_7g27400 FvH4_7g27430
malus_domestica MD08G1223600.v1.1 MD08G1224100.v1.1 MD08G1224300.v1.1 MD08G1224400.v1.1 MD08G1224500.v1.1 MD11G1289900.v1.1 MD11G1290000.v1.1 MD15G1417300.v1.1 MD15G1417400.v1.1 MD15G1417500.v1.1 MD17G1230500.v1.1
prunus_persica Prupe.1G561200_v2.0.a1 Prupe.1G561300_v2.0.a1 Prupe.1G561400_v2.0.a1 Prupe.1G561500_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G041900_v2.0.a1 Prupe.7G042100_v2.0.a1
pyrus_communis pycom08g19530 pycom15g37030 pycom15g37040 pycom17g23340
rosa_chinensis RchiOBHm_Chr1g0374241 RchiOBHm_Chr7g0224261 RchiOBHm_Chr7g0224561 RchiOBHm_Chr7g0224591 RchiOBHm_Chr7g0224611 RchiOBHm_Chr7g0224641 RchiOBHm_Chr7g0224801 RchiOBHm_Chr7g0224831
rosa_laevigata RLG00000001850 RLG00000001853 RLG00000001869 RLG00000001876 RLG00000001880 RLG00000001884 RLG00000001909 RLG00000026752
rosa_multiflora Rmu_co8280549.1_g000001 Rmu_co8423019.1_g000001 Rmu_co8464247.1_g000001 Rmu_sc0000144.1_g000002 Rmu_sc0000144.1_g000055 Rmu_sc0007613.1_g000002 Rmu_sc0008008.1_g000015 Rmu_sc0010368.1_g000011 Rmu_sc0010368.1_g000019
rosa_roxburghii Rroxscaffold_3G00234350 Rroxscaffold_3G00234370 Rroxscaffold_3G00234560 Rroxscaffold_3G00234570 Rroxscaffold_3G00234590 Rroxscaffold_3G00234630 Rroxscaffold_4G00316910
rosa_rugosa Rorug01G0381800 Rorug07G0221700 Rorug07G0223900 Rorug07G0224000 Rorug07G0224100 Rorug07G0224200 Rorug07G0224500 Rorug07G0225900 Rorug07G0225900 Rorug07G0226100 Rorug07G0226100 Rorug07G0226200 Rorug07G0226300
rosa_samantha Rh1AG392800 Rh1BG356900 Rh1CG369900 Rh1DG387400 Rh7AG366800 Rh7AG377200 Rh7AG377300 Rh7AG378400 Rh7AG378600 Rh7AG378700 Rh7CG385300 Rh7CG395900 Rh7CG396000 Rh7CG397700 Rh7CG398000 Rh7CG398200 Rh7CG398300 Rh7DG360700 Rh7DG369900 Rh7DG370300 Rh7DG370500 Rh7DG370800 Rh7DG371600 Rh7DG371700
rosa_wichuraiana Rw1G034300 Rw7G031030 Rw7G031250 Rw7G031260 Rw7G031270 Rw7G031290 Rw7G031370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 357, 557
AccBSI CCGCTC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 478
AciI CCGC 3 cut(s) 108, 165, 443
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 2 cut(s) 124, 277
AfaI GTAC 1 cut(s) 231
AgsI TTSAA 4 cut(s) 40, 68, 277, 283
AjnI CCWGG 2 cut(s) 221, 525
AluBI AGCT 2 cut(s) 217, 495
AluI AGCT 2 cut(s) 217, 495
AlwNI CAGNNNCTG 1 cut(s) 455
AoxI GGCC 3 cut(s) 105, 209, 483
ApoI RAATTY 2 cut(s) 124, 277
AseI ATTAAT 1 cut(s) 320
AspS9I GGNCC 1 cut(s) 381
AsuHPI GGTGA 4 cut(s) 73, 211, 319, 541
AvaII GGWCC 1 cut(s) 381
BaeGI GKGCMC 1 cut(s) 8
BccI CCATC 3 cut(s) 110, 220, 304
BciT130I CCWGG 2 cut(s) 223, 527
BfaI CTAG 1 cut(s) 290
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
Bme1390I CCNGG 2 cut(s) 223, 527
Bme18I GGWCC 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 381
BmiI GGNNCC 1 cut(s) 163
BmrFI CCNGG 2 cut(s) 223, 527
BmsI GCATC 1 cut(s) 443
BpmI CTGGAG 1 cut(s) 287
Bse1I ACTGG 5 cut(s) 13, 44, 108, 460, 486
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 2 cut(s) 223, 527
BseGI GGATG 1 cut(s) 231
BseMI GCAATG 1 cut(s) 345
BseNI ACTGG 5 cut(s) 13, 44, 108, 460, 486
BseSI GKGCMC 1 cut(s) 8
BshFI GGCC 3 cut(s) 107, 211, 485
BsnI GGCC 3 cut(s) 107, 211, 485
Bsp1286I GDGCHC 1 cut(s) 8
BspACI CCGC 3 cut(s) 108, 165, 443
BspANI GGCC 3 cut(s) 107, 211, 485
BspLI GGNNCC 1 cut(s) 163
BspQI GCTCTTC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 345
BsrI ACTGG 5 cut(s) 13, 44, 108, 460, 486
Bst2UI CCWGG 2 cut(s) 223, 527
Bst6I CTCTTC 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 209, 493
BstF5I GGATG 1 cut(s) 231
BstMWI GCNNNNNNNGC 2 cut(s) 299, 501
BstNI CCWGG 2 cut(s) 223, 527
BstNSI RCATGY 1 cut(s) 392
BstSCI CCNGG 2 cut(s) 221, 525
BstSLI GKGCMC 1 cut(s) 8
BsuRI GGCC 3 cut(s) 107, 211, 485
BtsCI GGATG 1 cut(s) 231
BtsIMutI CAGTG 3 cut(s) 6, 51, 453
Cac8I GCNNGC 2 cut(s) 209, 493
CaiI CAGNNNCTG 1 cut(s) 455
Cfr13I GGNCC 1 cut(s) 381
Csp6I GTAC 1 cut(s) 230
CspCI CAANNNNNGTGG 2 cut(s) 373, 408
CviAII CATG 2 cut(s) 32, 389
CviQI GTAC 1 cut(s) 230
EaeI YGGCCR 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 381
EcoRII CCWGG 2 cut(s) 221, 525
FaeI CATG 2 cut(s) 35, 392
FatI CATG 2 cut(s) 31, 388
FauNDI CATATG 1 cut(s) 377
FblI GTMKAC 1 cut(s) 478
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 290
GluI GCNGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 3 cut(s) 107, 211, 485
Hin1II CATG 2 cut(s) 35, 392
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 3 cut(s) 64, 133, 532
HphI GGTGA 4 cut(s) 73, 211, 319, 541
Hpy166II GTNNAC 3 cut(s) 384, 394, 479
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 3 cut(s) 384, 394, 479
HpyAV CCTTC 3 cut(s) 182, 292, 496
HpyCH4V TGCA 4 cut(s) 74, 80, 143, 238
HpyF10VI GCNNNNNNNGC 2 cut(s) 299, 501
Hsp92II CATG 2 cut(s) 35, 392
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 1 cut(s) 335
LweI GCATC 1 cut(s) 443
MaeI CTAG 1 cut(s) 290
MbiI CCGCTC 1 cut(s) 110
MboII GAAGA 2 cut(s) 167, 214
MfeI CAATTG 1 cut(s) 428
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 68, 124, 277, 428, 540
MseI TTAA 5 cut(s) 53, 87, 128, 320, 539
MslI CAYNNNNRTG 1 cut(s) 224
MspR9I CCNGG 2 cut(s) 223, 527
MunI CAATTG 1 cut(s) 428
MvaI CCWGG 2 cut(s) 223, 527
MwoI GCNNNNNNNGC 2 cut(s) 299, 501
NdeI CATATG 1 cut(s) 377
NlaIII CATG 2 cut(s) 35, 392
NlaIV GGNNCC 1 cut(s) 163
NspI RCATGY 1 cut(s) 392
PciSI GCTCTTC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 64, 133, 532
PkrI GCNGC 1 cut(s) 109
PshBI ATTAAT 1 cut(s) 320
PsiI TTATAA 2 cut(s) 357, 557
Psp6I CCWGG 2 cut(s) 221, 525
PspGI CCWGG 2 cut(s) 221, 525
PspN4I GGNNCC 1 cut(s) 163
PspPI GGNCC 1 cut(s) 381
PstNI CAGNNNCTG 1 cut(s) 455
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 5 cut(s) 53, 87, 128, 320, 539
SatI GCNGC 1 cut(s) 108
Sau96I GGNCC 1 cut(s) 381
ScrFI CCNGG 2 cut(s) 223, 527
SduI GDGCHC 1 cut(s) 8
SfaNI GCATC 1 cut(s) 443
SinI GGWCC 1 cut(s) 381
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 5 cut(s) 68, 124, 277, 428, 540
SsiI CCGC 3 cut(s) 108, 165, 443
SspI AATATT 1 cut(s) 91
SspMI CTAG 1 cut(s) 290
StyD4I CCNGG 2 cut(s) 221, 525
TaqI TCGA 1 cut(s) 195
TasI AATT 5 cut(s) 68, 124, 277, 428, 540
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 3 cut(s) 64, 133, 532
Tru1I TTAA 5 cut(s) 53, 87, 128, 320, 539
Tru9I TTAA 5 cut(s) 53, 87, 128, 320, 539
TscAI CASTG 3 cut(s) 13, 51, 460
TspDTI ATGAA 5 cut(s) 20, 137, 142, 181, 571
TspRI CASTG 3 cut(s) 13, 51, 460
VpaK11BI GGWCC 1 cut(s) 381
VspI ATTAAT 1 cut(s) 320
XapI RAATTY 2 cut(s) 124, 277
XceI RCATGY 1 cut(s) 392
XcmI CCANNNNNNNNNTGG 1 cut(s) 219
XmiI GTMKAC 1 cut(s) 478
XspI CTAG 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.